Wall clock time and date at job start Tue Mar 31 2020 20:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21283 * 120.00436 * 2 1 4 4 N 1.34780 * 119.99729 * 179.97438 * 2 1 3 5 5 C 1.48112 * 127.03856 * 0.04316 * 4 2 1 6 6 C 1.54935 * 103.25744 * 140.67324 * 5 4 2 7 7 C 1.54615 * 102.83872 * 37.37897 * 6 5 4 8 8 C 1.52998 * 110.41352 * 219.21124 * 7 6 5 9 9 C 1.50703 * 110.32751 * 97.04356 * 7 6 5 10 10 O 1.21289 * 119.99930 * 1.69880 * 9 7 6 11 11 N 1.34771 * 120.00044 * 181.70339 * 9 7 6 12 12 C 1.46969 * 120.59545 * 185.32079 * 11 9 7 13 13 C 1.53378 * 108.63113 * 235.24859 * 12 11 9 14 14 H 1.08991 * 109.75313 * 70.40240 * 13 12 11 15 15 C 1.52999 * 109.60464 * 190.82630 * 13 12 11 16 16 N 1.46961 * 108.63137 * 310.56906 * 13 12 11 17 17 C 1.36938 * 120.59220 * 235.20359 * 16 13 12 18 18 H 1.08005 * 119.99607 * 126.10742 * 17 16 13 19 19 C 1.38811 * 120.00129 * 306.10562 * 17 16 13 20 20 N 1.31613 * 119.99924 * 338.13424 * 19 17 16 21 21 Si 1.86807 * 119.99771 * 158.14177 * 19 17 16 22 22 H 1.48502 * 109.46729 * 180.02562 * 21 19 17 23 23 H 1.48498 * 109.47108 * 299.99753 * 21 19 17 24 24 H 1.48496 * 109.47314 * 59.99989 * 21 19 17 25 25 C 1.46966 * 118.81488 * 55.48520 * 16 13 12 26 26 H 1.09005 * 109.60754 * 64.25716 * 25 16 13 27 27 C 1.52993 * 109.61224 * 184.77477 * 25 16 13 28 28 C 1.46969 * 120.59520 * 5.33602 * 11 9 7 29 29 C 1.47485 * 127.03030 * 180.02562 * 4 2 1 30 30 H 1.08998 * 109.47371 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47022 * 300.00419 * 1 2 3 32 32 H 1.09003 * 109.46658 * 60.00350 * 1 2 3 33 33 H 1.09003 * 110.66327 * 259.11788 * 5 4 2 34 34 H 1.09003 * 110.66219 * 22.06439 * 5 4 2 35 35 H 1.08998 * 110.74085 * 279.03580 * 6 5 4 36 36 H 1.08998 * 110.74057 * 155.71904 * 6 5 4 37 37 H 1.09000 * 109.47655 * 304.01258 * 8 7 6 38 38 H 1.09001 * 109.47272 * 64.00980 * 8 7 6 39 39 H 1.09001 * 109.47030 * 184.01016 * 8 7 6 40 40 H 1.08994 * 109.61282 * 115.50004 * 12 11 9 41 41 H 1.09002 * 109.60437 * 354.98439 * 12 11 9 42 42 H 1.08994 * 109.46821 * 187.52787 * 15 13 12 43 43 H 1.08993 * 109.47581 * 307.53280 * 15 13 12 44 44 H 1.09000 * 109.47020 * 67.53532 * 15 13 12 45 45 H 0.96997 * 119.99968 * 175.07793 * 20 19 17 46 46 H 1.08996 * 109.47210 * 63.44669 * 27 25 16 47 47 H 1.08999 * 109.47282 * 183.44520 * 27 25 16 48 48 H 1.08998 * 109.46994 * 303.44295 * 27 25 16 49 49 H 1.08999 * 109.60957 * 244.49628 * 28 11 9 50 50 H 1.08997 * 109.60773 * 5.01117 * 28 11 9 51 51 H 1.09000 * 109.91669 * 86.11879 * 29 4 2 52 52 H 1.08996 * 110.07804 * 324.92711 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 1.6029 -2.5310 0.0002 6 6 2.5390 -3.3134 -0.9548 7 6 3.9309 -2.7224 -0.6320 8 6 4.7508 -2.5575 -1.9132 9 6 4.6612 -3.6068 0.3455 10 8 4.1480 -4.6349 0.7337 11 7 5.8846 -3.2553 0.7884 12 6 6.6574 -4.1616 1.6494 13 6 7.0380 -3.4126 2.9326 14 1 6.1494 -3.2526 3.5430 15 6 8.0616 -4.2321 3.7209 16 7 7.6230 -2.1160 2.5634 17 6 8.8657 -1.7585 3.0142 18 1 9.6274 -1.4527 2.3122 19 6 9.1463 -1.7889 4.3733 20 7 8.1655 -1.7328 5.2492 21 14 10.9160 -1.9094 4.9591 22 1 10.9459 -1.9253 6.4437 23 1 11.5257 -3.1595 4.4388 24 1 11.6832 -0.7398 4.4605 25 6 6.8480 -1.2073 1.7070 26 1 5.9443 -0.8938 2.2297 27 6 7.6954 0.0180 1.3590 28 6 6.4697 -1.9586 0.4193 29 6 3.6446 -1.3478 0.0011 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.6295 -2.9602 1.0019 34 1 0.5828 -2.5164 -0.3836 35 1 2.2723 -3.1270 -1.9951 36 1 2.5119 -4.3803 -0.7336 37 1 4.8194 -3.5164 -2.4268 38 1 4.2651 -1.8306 -2.5644 39 1 5.7519 -2.2077 -1.6614 40 1 7.5611 -4.4786 1.1290 41 1 6.0520 -5.0326 1.9001 42 1 8.2303 -3.7660 4.6916 43 1 7.6838 -5.2443 3.8646 44 1 9.0003 -4.2698 3.1680 45 1 8.3549 -1.8258 6.1959 46 1 8.5627 -0.2934 0.7770 47 1 7.0986 0.7187 0.7751 48 1 8.0287 0.5019 2.2771 49 1 7.3601 -2.1187 -0.1886 50 1 5.7404 -1.3748 -0.1423 51 1 4.0212 -1.3242 1.0237 52 1 4.1187 -0.5623 -0.5871 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880456850.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:04 Heat of formation + Delta-G solvation = -46.575940 kcal Electronic energy + Delta-G solvation = -32364.038278 eV Core-core repulsion = 28364.086475 eV Total energy + Delta-G solvation = -3999.951802 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.19106 -40.55090 -39.20402 -38.12508 -36.10974 -34.63250 -34.22520 -33.09141 -30.88636 -30.68078 -29.59119 -27.71924 -27.55889 -27.17104 -25.77907 -24.39702 -22.90865 -22.09847 -21.26060 -20.58314 -19.70544 -18.33982 -18.12000 -17.91040 -17.14815 -16.87749 -16.59385 -16.42998 -16.26230 -16.04915 -15.58618 -15.34058 -14.95067 -14.73689 -14.62452 -14.40251 -14.07692 -13.74159 -13.69823 -13.42184 -13.35844 -13.31562 -13.23421 -13.06154 -12.95305 -12.85337 -12.65420 -12.51960 -12.36549 -12.31477 -12.22459 -12.09098 -12.02048 -11.88243 -11.76179 -11.65942 -11.44945 -11.04267 -10.69770 -10.20412 -9.86218 -9.68119 -8.41940 -7.70492 -5.63496 1.45116 1.48887 1.49067 1.53769 1.57467 1.87467 2.03068 2.49204 3.21159 3.24312 3.29035 3.46093 3.57633 3.80531 3.86299 4.05980 4.11218 4.20701 4.27190 4.32453 4.38372 4.41491 4.46093 4.48387 4.55796 4.61933 4.64734 4.67882 4.71980 4.75803 4.79019 4.85748 4.86154 4.91905 4.94368 4.96215 5.07297 5.09394 5.14996 5.19573 5.24096 5.35603 5.45173 5.55069 5.60983 5.72091 5.82967 6.46227 6.48292 6.55756 7.06814 7.09721 7.20462 7.74837 8.49429 9.11037 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016104 B = 0.003698 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.292697 B = 7569.042871 C = 8263.267035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.519 3.481 3 O -0.600 6.600 4 N -0.621 5.621 5 C 0.096 3.904 6 C -0.109 4.109 7 C -0.087 4.087 8 C -0.141 4.141 9 C 0.519 3.481 10 O -0.577 6.577 11 N -0.599 5.599 12 C 0.108 3.892 13 C 0.184 3.816 14 H -0.012 1.012 15 C -0.134 4.134 16 N -0.588 5.588 17 C -0.265 4.265 18 H 0.054 0.946 19 C 0.002 3.998 20 N -0.908 5.908 21 Si 0.935 3.065 22 H -0.298 1.298 23 H -0.270 1.270 24 H -0.274 1.274 25 C 0.148 3.852 26 H -0.005 1.005 27 C -0.119 4.119 28 C 0.098 3.902 29 C 0.115 3.885 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.061 0.939 34 H 0.128 0.872 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.048 0.952 44 H 0.053 0.947 45 H 0.250 0.750 46 H 0.062 0.938 47 H 0.067 0.933 48 H 0.037 0.963 49 H 0.082 0.918 50 H 0.105 0.895 51 H 0.040 0.960 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.058 -2.703 -16.349 21.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.311 3.689 3 O -0.481 6.481 4 N -0.355 5.355 5 C -0.025 4.025 6 C -0.147 4.147 7 C -0.091 4.091 8 C -0.198 4.198 9 C 0.308 3.692 10 O -0.457 6.457 11 N -0.328 5.328 12 C -0.016 4.016 13 C 0.077 3.923 14 H 0.005 0.995 15 C -0.192 4.192 16 N -0.313 5.313 17 C -0.395 4.395 18 H 0.072 0.928 19 C -0.198 4.198 20 N -0.549 5.549 21 Si 0.762 3.238 22 H -0.224 1.224 23 H -0.195 1.195 24 H -0.199 1.199 25 C 0.041 3.959 26 H 0.012 0.988 27 C -0.177 4.177 28 C -0.026 4.026 29 C -0.008 4.008 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.130 0.870 33 H 0.079 0.921 34 H 0.146 0.854 35 H 0.130 0.870 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.059 0.941 46 H 0.081 0.919 47 H 0.086 0.914 48 H 0.056 0.944 49 H 0.100 0.900 50 H 0.122 0.878 51 H 0.058 0.942 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.061 -2.513 -15.950 20.768 hybrid contribution 1.213 0.025 1.572 1.986 sum -11.848 -2.488 -14.378 18.796 Atomic orbital electron populations 1.21926 0.87170 1.06505 1.06304 1.21470 0.92236 0.80987 0.74175 1.90718 1.72105 1.32429 1.52867 1.49095 1.06761 1.07126 1.72489 1.22822 0.99966 0.79553 1.00173 1.22786 0.89700 1.01037 1.01222 1.21666 0.98207 0.93376 0.95846 1.22091 0.99890 1.04100 0.93753 1.20859 0.80659 0.86186 0.81466 1.90609 1.66875 1.28109 1.60135 1.48032 1.16956 1.18968 1.48893 1.22157 0.95024 0.92502 0.91937 1.20476 0.93745 0.86299 0.91751 0.99463 1.21837 0.98421 0.97150 1.01807 1.44219 1.16310 1.13007 1.57735 1.18791 0.88447 1.43273 0.88944 0.92816 1.26075 0.99180 0.97291 0.97259 1.70312 1.33375 1.50091 1.01088 0.85906 0.82518 0.78951 0.76469 1.22440 1.19547 1.19904 1.21107 0.93094 0.91207 0.90447 0.98751 1.21555 0.99447 0.95973 1.00684 1.22764 0.99190 0.83206 0.97406 1.22099 0.82730 0.96137 0.99862 0.87689 0.88175 0.86971 0.92103 0.85391 0.87000 0.88768 0.90477 0.89222 0.91194 0.90794 0.90543 0.92070 0.93348 0.92831 0.94082 0.91941 0.91378 0.94352 0.89998 0.87761 0.94183 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 10.23 71.23 0.73 -1.35 16 2 C 0.52 12.78 8.00 87.65 0.70 13.48 16 3 O -0.60 -20.87 17.44 -3.04 -0.05 -20.93 16 4 N -0.62 -14.40 3.29 -809.38 -2.66 -17.07 16 5 C 0.10 1.66 6.83 86.73 0.59 2.25 16 6 C -0.11 -1.92 6.00 31.81 0.19 -1.73 16 7 C -0.09 -2.01 0.62 -52.03 -0.03 -2.04 16 8 C -0.14 -2.46 7.88 71.98 0.57 -1.89 16 9 C 0.52 16.60 6.30 87.66 0.55 17.15 16 10 O -0.58 -21.50 14.81 -3.06 -0.05 -21.54 16 11 N -0.60 -20.59 2.94 -817.12 -2.40 -22.99 16 12 C 0.11 4.13 5.91 86.42 0.51 4.64 16 13 C 0.18 8.48 3.27 45.03 0.15 8.62 16 14 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 15 C -0.13 -6.01 7.84 71.98 0.56 -5.45 16 16 N -0.59 -27.98 2.74 -649.88 -1.78 -29.76 16 17 C -0.26 -13.47 6.51 84.03 0.55 -12.93 16 18 H 0.05 2.72 7.32 -2.91 -0.02 2.70 16 19 C 0.00 0.08 3.22 84.86 0.27 0.36 16 20 N -0.91 -52.03 11.84 21.65 0.26 -51.78 16 21 Si 0.93 42.26 29.61 68.60 2.03 44.29 16 22 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 25 C 0.15 6.09 3.67 45.17 0.17 6.25 16 26 H -0.01 -0.25 7.80 -2.38 -0.02 -0.27 16 27 C -0.12 -4.42 8.20 71.98 0.59 -3.83 16 28 C 0.10 3.12 3.51 86.56 0.30 3.42 16 29 C 0.12 3.07 4.53 86.54 0.39 3.47 16 30 H 0.10 0.76 5.92 -2.39 -0.01 0.75 16 31 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.13 1.12 6.39 -2.39 -0.02 1.11 16 35 H 0.11 1.31 7.87 -2.39 -0.02 1.29 16 36 H 0.09 1.91 6.82 -2.39 -0.02 1.89 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.30 5.20 -2.39 -0.01 1.29 16 40 H 0.07 2.67 8.12 -2.39 -0.02 2.65 16 41 H 0.08 2.96 6.99 -2.39 -0.02 2.94 16 42 H 0.06 3.11 5.00 -2.39 -0.01 3.10 16 43 H 0.05 1.87 8.14 -2.39 -0.02 1.86 16 44 H 0.05 2.37 7.54 -2.39 -0.02 2.35 16 45 H 0.25 14.02 8.32 -92.71 -0.77 13.25 16 46 H 0.06 2.17 7.68 -2.39 -0.02 2.16 16 47 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 48 H 0.04 1.66 7.55 -2.39 -0.02 1.64 16 49 H 0.08 2.42 8.06 -2.39 -0.02 2.40 16 50 H 0.10 2.81 3.06 -2.39 -0.01 2.80 16 51 H 0.04 1.36 6.70 -2.39 -0.02 1.35 16 52 H 0.09 2.34 6.92 -2.39 -0.02 2.32 16 Total: -1.00 -72.94 384.88 3.06 -69.89 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.92 Total: 19.44 kcal Atomic # 6 Polarization: 23.64 SS G_CDS: 6.79 Total: 30.43 kcal Atomic # 7 Polarization: -115.00 SS G_CDS: -6.59 Total: -121.59 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -0.10 Total: -42.47 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -72.94 3.06 -69.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880456850.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.312 kcal (2) G-P(sol) polarization free energy of solvation -72.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds