Wall clock time and date at job start Tue Mar 31 2020 20:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.60966 * 2 1 4 4 C 1.53363 * 109.61268 * 239.65435 * 2 1 3 5 5 N 1.46955 * 108.63961 * 190.66185 * 4 2 1 6 6 C 1.34779 * 120.60139 * 235.20918 * 5 4 2 7 7 O 1.21289 * 119.99283 * 359.97438 * 6 5 4 8 8 C 1.50692 * 120.00574 * 179.97438 * 6 5 4 9 9 C 1.53938 * 113.73579 * 179.97438 * 8 6 5 10 10 N 1.47960 * 86.30457 * 269.30631 * 9 8 6 11 11 C 1.46892 * 110.99999 * 222.47132 * 10 9 8 12 12 H 1.08999 * 110.44194 * 53.14254 * 11 10 9 13 13 C 1.54810 * 110.48855 * 290.44797 * 11 10 9 14 14 C 1.54996 * 102.09710 * 220.44440 * 13 11 10 15 15 O 1.44386 * 103.48504 * 37.02609 * 14 13 11 16 16 C 1.43739 * 106.97854 * 319.93635 * 15 14 13 17 17 C 1.48184 * 90.67427 * 335.40877 * 10 9 8 18 18 C 1.46969 * 118.81094 * 55.47783 * 5 4 2 19 19 C 1.53806 * 108.39895 * 304.48908 * 18 5 4 20 20 H 1.08998 * 109.53369 * 169.30368 * 19 18 5 21 21 C 1.53006 * 109.88192 * 289.76037 * 19 18 5 22 22 N 1.46968 * 109.74408 * 120.42637 * 2 1 3 23 23 C 1.36937 * 120.60068 * 355.07869 * 22 2 1 24 24 H 1.08000 * 119.99705 * 29.88624 * 23 22 2 25 25 C 1.38813 * 120.00085 * 209.89299 * 23 22 2 26 26 N 1.31623 * 119.99929 * 13.81908 * 25 23 22 27 27 Si 1.86800 * 119.99941 * 193.81652 * 25 23 22 28 28 H 1.48498 * 109.47008 * 59.99907 * 27 25 23 29 29 H 1.48494 * 109.47219 * 180.02562 * 27 25 23 30 30 H 1.48504 * 109.46898 * 300.00089 * 27 25 23 31 31 H 1.09003 * 109.46965 * 180.33910 * 1 2 3 32 32 H 1.08998 * 109.46993 * 300.34175 * 1 2 3 33 33 H 1.08998 * 109.46661 * 60.34265 * 1 2 3 34 34 H 1.09004 * 109.61117 * 70.91617 * 4 2 1 35 35 H 1.09003 * 109.75245 * 310.49694 * 4 2 1 36 36 H 1.09002 * 113.01172 * 311.63437 * 8 6 5 37 37 H 1.09003 * 113.75396 * 23.67929 * 9 8 6 38 38 H 1.09000 * 113.75764 * 154.93322 * 9 8 6 39 39 H 1.09000 * 110.90931 * 338.64443 * 13 11 10 40 40 H 1.09000 * 110.90453 * 102.24878 * 13 11 10 41 41 H 1.09000 * 110.62014 * 278.53208 * 14 13 11 42 42 H 1.08997 * 110.62143 * 155.52213 * 14 13 11 43 43 H 1.09003 * 109.88366 * 267.09545 * 16 15 14 44 44 H 1.08998 * 110.00723 * 146.00995 * 16 15 14 45 45 H 1.09007 * 113.66023 * 270.27172 * 17 10 9 46 46 H 1.09001 * 113.92528 * 138.94853 * 17 10 9 47 47 H 1.09002 * 109.60525 * 64.27010 * 18 5 4 48 48 H 1.08998 * 109.61220 * 184.77722 * 18 5 4 49 49 H 1.08997 * 109.46864 * 179.24215 * 21 19 18 50 50 H 1.08994 * 109.47208 * 299.24350 * 21 19 18 51 51 H 1.08999 * 109.46925 * 59.24603 * 21 19 18 52 52 H 0.97001 * 119.99633 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0267 0.0000 4 6 2.0448 -0.7299 -1.2467 5 7 3.4915 -0.9437 -1.1020 6 6 4.3477 -0.5056 -2.0463 7 8 3.9260 0.0706 -3.0267 8 6 5.8287 -0.7315 -1.8839 9 6 6.6715 -0.1740 -3.0452 10 7 6.5147 -1.5053 -3.6717 11 6 7.7790 -1.9599 -4.2654 12 1 8.5822 -1.9166 -3.5299 13 6 8.1317 -1.1067 -5.5081 14 6 8.6727 -2.1748 -6.4925 15 8 7.8320 -3.3213 -6.2407 16 6 7.6312 -3.3905 -4.8191 17 6 6.2969 -2.1243 -2.3430 18 6 3.9877 -1.6491 0.0880 19 6 3.4734 -0.9144 1.3376 20 1 3.6668 -1.5208 2.2224 21 6 4.1806 0.4354 1.4755 22 7 2.0265 -0.7005 1.1928 23 6 1.1567 -1.1465 2.1518 24 1 0.1532 -1.4367 1.8777 25 6 1.5648 -1.2255 3.4762 26 7 2.6728 -0.6277 3.8602 27 14 0.5414 -2.1800 4.7135 28 1 0.4410 -3.5979 4.2839 29 1 1.1879 -2.1114 6.0486 30 1 -0.8187 -1.5890 4.7918 31 1 -0.3633 -1.0277 0.0061 32 1 -0.3633 0.5191 0.8869 33 1 -0.3632 0.5085 -0.8930 34 1 1.8514 -0.1235 -2.1316 35 1 1.5409 -1.6914 -1.3450 36 1 6.1975 -0.4479 -0.8982 37 1 6.1834 0.6305 -3.5953 38 1 7.6988 0.0626 -2.7681 39 1 7.2432 -0.6208 -5.9113 40 1 8.9010 -0.3721 -5.2700 41 1 9.7146 -2.4071 -6.2721 42 1 8.5632 -1.8375 -7.5231 43 1 8.3816 -4.0410 -4.3699 44 1 6.6331 -3.7708 -4.6015 45 1 7.2152 -2.4598 -1.8610 46 1 5.5100 -2.8784 -2.3303 47 1 3.6186 -2.6747 0.0856 48 1 5.0777 -1.6499 0.0849 49 1 3.8017 0.9559 2.3550 50 1 5.2532 0.2742 1.5828 51 1 3.9907 1.0376 0.5870 52 1 2.9581 -0.6832 4.7857 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898131864.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:20 Heat of formation + Delta-G solvation = -4.362258 kcal Electronic energy + Delta-G solvation = -31361.390852 eV Core-core repulsion = 27363.269572 eV Total energy + Delta-G solvation = -3998.121280 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.02629 -39.49514 -38.29502 -36.93241 -34.03071 -32.90188 -32.34002 -31.13366 -29.90665 -28.07302 -27.53745 -26.23381 -26.08707 -25.35678 -23.72710 -22.73304 -21.66061 -20.98002 -20.71948 -19.12780 -18.14993 -17.26400 -17.02810 -16.56273 -15.91819 -15.68653 -15.60720 -15.08532 -14.86332 -14.75294 -14.28612 -14.09669 -13.95040 -13.56303 -13.32239 -13.08333 -12.91609 -12.73217 -12.50182 -12.37684 -12.05289 -11.76733 -11.74589 -11.43844 -11.41864 -11.22585 -11.16304 -11.08724 -10.89757 -10.84474 -10.75083 -10.66531 -10.55905 -10.17149 -10.11359 -9.90293 -9.80663 -9.58894 -9.27014 -8.95181 -8.53259 -8.13355 -6.64650 -5.84337 -3.30534 2.96267 3.33659 3.36460 3.39822 3.41547 3.66001 3.73082 4.11216 4.42229 4.43259 4.49821 4.65669 4.76405 4.84365 4.91117 5.05544 5.10027 5.18401 5.32256 5.32884 5.36902 5.41099 5.44565 5.46574 5.62686 5.67124 5.72426 5.77548 5.80248 5.87366 5.96356 6.07789 6.10173 6.13304 6.19068 6.25778 6.39156 6.44155 6.59253 6.60176 6.73665 6.82129 6.86595 6.91904 7.02035 7.12516 7.51680 7.61398 7.76703 7.98309 8.39309 8.64437 9.15558 9.76449 10.34016 11.22505 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022206 B = 0.002716 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.624899 B =10306.165604 C =10655.823638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.156 3.844 3 H 0.030 0.970 4 C 0.102 3.898 5 N -0.592 5.592 6 C 0.535 3.465 7 O -0.547 6.547 8 C -0.141 4.141 9 C 0.025 3.975 10 N -0.459 5.459 11 C 0.013 3.987 12 H 0.061 0.939 13 C -0.147 4.147 14 C 0.048 3.952 15 O -0.375 6.375 16 C 0.058 3.942 17 C 0.016 3.984 18 C 0.086 3.914 19 C 0.178 3.822 20 H 0.108 0.892 21 C -0.141 4.141 22 N -0.581 5.581 23 C -0.250 4.250 24 H 0.070 0.930 25 C 0.004 3.996 26 N -0.901 5.901 27 Si 0.902 3.098 28 H -0.285 1.285 29 H -0.291 1.291 30 H -0.284 1.284 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.093 0.907 43 H 0.058 0.942 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.094 0.906 47 H 0.062 0.938 48 H 0.069 0.931 49 H 0.076 0.924 50 H 0.025 0.975 51 H 0.023 0.977 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.296 -2.036 -12.442 17.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.048 3.952 3 H 0.048 0.952 4 C -0.022 4.022 5 N -0.324 5.324 6 C 0.322 3.678 7 O -0.425 6.425 8 C -0.163 4.163 9 C -0.103 4.103 10 N -0.182 5.182 11 C -0.096 4.096 12 H 0.079 0.921 13 C -0.185 4.185 14 C -0.029 4.029 15 O -0.293 6.293 16 C -0.020 4.020 17 C -0.113 4.113 18 C -0.038 4.038 19 C 0.071 3.929 20 H 0.126 0.874 21 C -0.200 4.200 22 N -0.304 5.304 23 C -0.379 4.379 24 H 0.088 0.912 25 C -0.194 4.194 26 N -0.546 5.546 27 Si 0.732 3.268 28 H -0.211 1.211 29 H -0.217 1.217 30 H -0.210 1.210 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.111 0.889 43 H 0.076 0.924 44 H 0.111 0.889 45 H 0.097 0.903 46 H 0.112 0.888 47 H 0.080 0.920 48 H 0.088 0.912 49 H 0.095 0.905 50 H 0.044 0.956 51 H 0.042 0.958 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 11.559 -1.988 -13.465 17.857 hybrid contribution 0.448 -0.275 1.738 1.816 sum 12.008 -2.262 -11.727 16.936 Atomic orbital electron populations 1.21751 0.95322 1.01635 1.00583 1.20781 0.93224 0.94038 0.87117 0.95192 1.22231 0.79332 1.00655 0.99956 1.47931 1.07115 1.56270 1.21038 1.19625 0.87039 0.78783 0.82357 1.90635 1.78640 1.43045 1.30179 1.22832 0.94515 0.98136 1.00806 1.23799 0.98349 0.94333 0.93859 1.68885 1.27954 1.03544 1.17803 1.23671 0.92645 0.95840 0.97459 0.92088 1.23170 1.02298 0.98199 0.94825 1.23516 0.94044 0.85204 1.00106 1.88889 1.69972 1.47980 1.22505 1.23119 1.02281 0.95044 0.81510 1.23955 1.01326 0.96253 0.89755 1.22746 0.97939 0.96307 0.86804 1.20825 0.83247 0.94807 0.94049 0.87407 1.22011 0.97206 0.99579 1.01161 1.44119 1.01759 1.64544 1.19963 1.19151 0.96062 1.36420 0.86284 0.91205 1.25086 0.97965 0.99518 0.96869 1.69949 1.24212 1.44111 1.16312 0.86381 0.79750 0.80089 0.80564 1.21106 1.21736 1.20985 0.92582 0.91706 0.94009 0.90233 0.92131 0.87625 0.87844 0.90873 0.89086 0.90361 0.92352 0.88873 0.92426 0.88947 0.90314 0.88788 0.91996 0.91241 0.90459 0.95554 0.95805 0.93627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 7.96 37.16 0.30 -2.18 16 2 C 0.16 3.16 3.23 -67.48 -0.22 2.94 16 3 H 0.03 0.66 7.40 -51.93 -0.38 0.28 16 4 C 0.10 1.90 5.90 -3.61 -0.02 1.88 16 5 N -0.59 -10.45 2.60 -172.22 -0.45 -10.90 16 6 C 0.53 9.17 7.14 -10.99 -0.08 9.09 16 7 O -0.55 -11.03 15.30 5.55 0.08 -10.95 16 8 C -0.14 -1.83 2.98 -90.83 -0.27 -2.10 16 9 C 0.03 0.30 6.86 -2.77 -0.02 0.28 16 10 N -0.46 -5.50 5.78 -227.52 -1.31 -6.82 16 11 C 0.01 0.13 2.32 -66.18 -0.15 -0.02 16 12 H 0.06 0.50 7.77 -51.93 -0.40 0.10 16 13 C -0.15 -1.30 6.36 -24.72 -0.16 -1.46 16 14 C 0.05 0.41 7.72 38.21 0.29 0.71 16 15 O -0.37 -4.45 11.52 -35.23 -0.41 -4.85 16 16 C 0.06 0.59 7.25 37.74 0.27 0.87 16 17 C 0.02 0.18 7.03 -2.64 -0.02 0.16 16 18 C 0.09 1.48 5.92 -3.37 -0.02 1.46 16 19 C 0.18 3.74 2.33 -67.25 -0.16 3.59 16 20 H 0.11 2.57 6.00 -51.93 -0.31 2.26 16 21 C -0.14 -2.88 8.95 37.16 0.33 -2.55 16 22 N -0.58 -13.23 2.68 -156.76 -0.42 -13.65 16 23 C -0.25 -6.24 8.59 -15.06 -0.13 -6.37 16 24 H 0.07 1.72 6.24 -52.49 -0.33 1.40 16 25 C 0.00 0.10 4.99 -17.43 -0.09 0.02 16 26 N -0.90 -23.77 9.99 55.49 0.55 -23.22 16 27 Si 0.90 20.52 29.58 -169.99 -5.03 15.49 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 30 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 31 H 0.06 1.02 7.33 -51.93 -0.38 0.64 16 32 H 0.06 1.27 7.73 -51.93 -0.40 0.87 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.49 6.99 -51.93 -0.36 1.13 16 35 H 0.06 1.11 8.12 -51.93 -0.42 0.69 16 36 H 0.11 1.26 7.23 -51.93 -0.38 0.89 16 37 H 0.10 1.40 7.41 -51.93 -0.38 1.02 16 38 H 0.07 0.67 7.86 -51.93 -0.41 0.26 16 39 H 0.09 0.97 8.06 -51.93 -0.42 0.55 16 40 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.09 1.05 7.81 -51.93 -0.41 0.64 16 45 H 0.08 0.68 7.75 -51.93 -0.40 0.28 16 46 H 0.09 1.12 8.09 -51.93 -0.42 0.70 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.07 1.00 5.66 -51.93 -0.29 0.71 16 49 H 0.08 1.84 7.16 -51.93 -0.37 1.47 16 50 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.02 0.48 7.04 -51.93 -0.37 0.11 16 52 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 391.24 15.07 5.90 5.90 Total: -1.00 -29.40 391.24 -10.15 -39.55 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -8.93 Total: 3.14 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: -0.13 Total: 6.30 kcal Atomic # 7 Polarization: -52.96 SS G_CDS: -1.63 Total: -54.58 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.32 Total: -15.80 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.40 -10.15 -39.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898131864.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.189 kcal (2) G-P(sol) polarization free energy of solvation -29.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds