Wall clock time and date at job start Tue Mar 31 2020 20:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.60966 * 2 1 4 4 C 1.53363 * 109.61268 * 239.65435 * 2 1 3 5 5 N 1.46955 * 108.63961 * 190.66185 * 4 2 1 6 6 C 1.34779 * 120.60139 * 235.20918 * 5 4 2 7 7 O 1.21289 * 119.99283 * 359.97438 * 6 5 4 8 8 C 1.50692 * 120.00574 * 179.97438 * 6 5 4 9 9 C 1.53938 * 113.73579 * 179.97438 * 8 6 5 10 10 N 1.47960 * 86.30457 * 269.30631 * 9 8 6 11 11 C 1.46892 * 110.99999 * 222.47132 * 10 9 8 12 12 H 1.08999 * 110.44194 * 53.14254 * 11 10 9 13 13 C 1.54810 * 110.48855 * 290.44797 * 11 10 9 14 14 C 1.54996 * 102.09710 * 220.44440 * 13 11 10 15 15 O 1.44386 * 103.48504 * 37.02609 * 14 13 11 16 16 C 1.43739 * 106.97854 * 319.93635 * 15 14 13 17 17 C 1.48184 * 90.67427 * 335.40877 * 10 9 8 18 18 C 1.46969 * 118.81094 * 55.47783 * 5 4 2 19 19 C 1.53806 * 108.39895 * 304.48908 * 18 5 4 20 20 H 1.08998 * 109.53369 * 169.30368 * 19 18 5 21 21 C 1.53006 * 109.88192 * 289.76037 * 19 18 5 22 22 N 1.46968 * 109.74408 * 120.42637 * 2 1 3 23 23 C 1.36937 * 120.60068 * 355.07869 * 22 2 1 24 24 H 1.08000 * 119.99705 * 29.88624 * 23 22 2 25 25 C 1.38813 * 120.00085 * 209.89299 * 23 22 2 26 26 N 1.31623 * 119.99929 * 13.81908 * 25 23 22 27 27 Si 1.86800 * 119.99941 * 193.81652 * 25 23 22 28 28 H 1.48498 * 109.47008 * 59.99907 * 27 25 23 29 29 H 1.48494 * 109.47219 * 180.02562 * 27 25 23 30 30 H 1.48504 * 109.46898 * 300.00089 * 27 25 23 31 31 H 1.09003 * 109.46965 * 180.33910 * 1 2 3 32 32 H 1.08998 * 109.46993 * 300.34175 * 1 2 3 33 33 H 1.08998 * 109.46661 * 60.34265 * 1 2 3 34 34 H 1.09004 * 109.61117 * 70.91617 * 4 2 1 35 35 H 1.09003 * 109.75245 * 310.49694 * 4 2 1 36 36 H 1.09002 * 113.01172 * 311.63437 * 8 6 5 37 37 H 1.09003 * 113.75396 * 23.67929 * 9 8 6 38 38 H 1.09000 * 113.75764 * 154.93322 * 9 8 6 39 39 H 1.09000 * 110.90931 * 338.64443 * 13 11 10 40 40 H 1.09000 * 110.90453 * 102.24878 * 13 11 10 41 41 H 1.09000 * 110.62014 * 278.53208 * 14 13 11 42 42 H 1.08997 * 110.62143 * 155.52213 * 14 13 11 43 43 H 1.09003 * 109.88366 * 267.09545 * 16 15 14 44 44 H 1.08998 * 110.00723 * 146.00995 * 16 15 14 45 45 H 1.09007 * 113.66023 * 270.27172 * 17 10 9 46 46 H 1.09001 * 113.92528 * 138.94853 * 17 10 9 47 47 H 1.09002 * 109.60525 * 64.27010 * 18 5 4 48 48 H 1.08998 * 109.61220 * 184.77722 * 18 5 4 49 49 H 1.08997 * 109.46864 * 179.24215 * 21 19 18 50 50 H 1.08994 * 109.47208 * 299.24350 * 21 19 18 51 51 H 1.08999 * 109.46925 * 59.24603 * 21 19 18 52 52 H 0.97001 * 119.99633 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0267 0.0000 4 6 2.0448 -0.7299 -1.2467 5 7 3.4915 -0.9437 -1.1020 6 6 4.3477 -0.5056 -2.0463 7 8 3.9260 0.0706 -3.0267 8 6 5.8287 -0.7315 -1.8839 9 6 6.6715 -0.1740 -3.0452 10 7 6.5147 -1.5053 -3.6717 11 6 7.7790 -1.9599 -4.2654 12 1 8.5822 -1.9166 -3.5299 13 6 8.1317 -1.1067 -5.5081 14 6 8.6727 -2.1748 -6.4925 15 8 7.8320 -3.3213 -6.2407 16 6 7.6312 -3.3905 -4.8191 17 6 6.2969 -2.1243 -2.3430 18 6 3.9877 -1.6491 0.0880 19 6 3.4734 -0.9144 1.3376 20 1 3.6668 -1.5208 2.2224 21 6 4.1806 0.4354 1.4755 22 7 2.0265 -0.7005 1.1928 23 6 1.1567 -1.1465 2.1518 24 1 0.1532 -1.4367 1.8777 25 6 1.5648 -1.2255 3.4762 26 7 2.6728 -0.6277 3.8602 27 14 0.5414 -2.1800 4.7135 28 1 0.4410 -3.5979 4.2839 29 1 1.1879 -2.1114 6.0486 30 1 -0.8187 -1.5890 4.7918 31 1 -0.3633 -1.0277 0.0061 32 1 -0.3633 0.5191 0.8869 33 1 -0.3632 0.5085 -0.8930 34 1 1.8514 -0.1235 -2.1316 35 1 1.5409 -1.6914 -1.3450 36 1 6.1975 -0.4479 -0.8982 37 1 6.1834 0.6305 -3.5953 38 1 7.6988 0.0626 -2.7681 39 1 7.2432 -0.6208 -5.9113 40 1 8.9010 -0.3721 -5.2700 41 1 9.7146 -2.4071 -6.2721 42 1 8.5632 -1.8375 -7.5231 43 1 8.3816 -4.0410 -4.3699 44 1 6.6331 -3.7708 -4.6015 45 1 7.2152 -2.4598 -1.8610 46 1 5.5100 -2.8784 -2.3303 47 1 3.6186 -2.6747 0.0856 48 1 5.0777 -1.6499 0.0849 49 1 3.8017 0.9559 2.3550 50 1 5.2532 0.2742 1.5828 51 1 3.9907 1.0376 0.5870 52 1 2.9581 -0.6832 4.7857 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898131864.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:19 Heat of formation + Delta-G solvation = -23.906664 kcal Electronic energy + Delta-G solvation = -31362.238361 eV Core-core repulsion = 27363.269572 eV Total energy + Delta-G solvation = -3998.968789 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.04322 -40.60158 -39.41760 -38.33472 -35.63687 -34.48564 -33.22088 -32.90814 -30.66563 -29.76074 -28.70473 -27.49478 -27.06046 -26.80163 -25.44461 -23.46805 -22.74640 -22.57921 -21.57859 -20.68844 -19.52901 -18.42164 -17.88530 -17.58214 -17.38164 -17.10544 -16.72436 -16.41904 -16.04653 -15.82218 -15.75439 -15.40777 -15.32723 -14.94213 -14.70974 -14.33361 -14.03736 -13.67928 -13.66678 -13.52504 -13.43094 -13.28470 -12.95333 -12.85662 -12.76704 -12.48107 -12.44240 -12.36492 -12.28377 -12.16998 -11.99681 -11.92326 -11.77517 -11.74067 -11.66379 -11.50722 -11.29119 -10.70166 -10.63556 -10.40299 -9.73888 -9.66491 -8.46806 -7.76727 -5.24584 1.51667 1.53741 1.58739 1.67504 2.07762 2.56647 2.80755 3.01884 3.31873 3.37989 3.51390 3.55198 3.56304 3.78698 3.96428 4.15376 4.16462 4.22653 4.30283 4.33445 4.35917 4.36397 4.49032 4.51870 4.57106 4.64435 4.66015 4.68644 4.73782 4.77995 4.79113 4.82720 4.86044 4.87485 4.87620 4.95713 5.00965 5.10701 5.12113 5.22973 5.31973 5.34949 5.41886 5.55286 5.75451 5.82973 5.90027 5.92999 6.10066 6.50044 6.59883 7.25648 7.28622 7.92473 8.46090 9.26868 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022206 B = 0.002716 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.624899 B =10306.165604 C =10655.823638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.155 3.845 3 H 0.009 0.991 4 C 0.111 3.889 5 N -0.597 5.597 6 C 0.531 3.469 7 O -0.582 6.582 8 C -0.145 4.145 9 C 0.035 3.965 10 N -0.488 5.488 11 C 0.015 3.985 12 H 0.088 0.912 13 C -0.144 4.144 14 C 0.045 3.955 15 O -0.406 6.406 16 C 0.055 3.945 17 C 0.027 3.973 18 C 0.101 3.899 19 C 0.175 3.825 20 H 0.081 0.919 21 C -0.124 4.124 22 N -0.595 5.595 23 C -0.253 4.253 24 H 0.069 0.931 25 C -0.041 4.041 26 N -0.921 5.921 27 Si 0.957 3.043 28 H -0.281 1.281 29 H -0.298 1.298 30 H -0.284 1.284 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.123 0.877 37 H 0.077 0.923 38 H 0.107 0.893 39 H 0.065 0.935 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.099 0.901 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.114 0.886 46 H 0.081 0.919 47 H 0.062 0.938 48 H 0.104 0.896 49 H 0.038 0.962 50 H 0.054 0.946 51 H 0.018 0.982 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.433 -2.897 -12.967 19.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 H 0.027 0.973 4 C -0.014 4.014 5 N -0.327 5.327 6 C 0.320 3.680 7 O -0.463 6.463 8 C -0.166 4.166 9 C -0.094 4.094 10 N -0.212 5.212 11 C -0.094 4.094 12 H 0.105 0.895 13 C -0.182 4.182 14 C -0.031 4.031 15 O -0.325 6.325 16 C -0.022 4.022 17 C -0.102 4.102 18 C -0.023 4.023 19 C 0.068 3.932 20 H 0.099 0.901 21 C -0.183 4.183 22 N -0.318 5.318 23 C -0.383 4.383 24 H 0.087 0.913 25 C -0.237 4.237 26 N -0.567 5.567 27 Si 0.787 3.213 28 H -0.207 1.207 29 H -0.224 1.224 30 H -0.211 1.211 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.141 0.859 37 H 0.095 0.905 38 H 0.125 0.875 39 H 0.084 0.916 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.117 0.883 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.132 0.868 46 H 0.100 0.900 47 H 0.081 0.919 48 H 0.122 0.878 49 H 0.057 0.943 50 H 0.073 0.927 51 H 0.037 0.963 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 13.701 -2.855 -14.005 19.799 hybrid contribution -0.240 0.042 1.821 1.837 sum 13.460 -2.813 -12.185 18.373 Atomic orbital electron populations 1.21668 0.94016 1.01754 1.01044 1.20834 0.94405 0.92883 0.87066 0.97339 1.22007 0.80425 1.00360 0.98595 1.48001 1.06810 1.56490 1.21433 1.20385 0.88782 0.77444 0.81352 1.90618 1.79668 1.44429 1.31542 1.22843 0.91300 1.00237 1.02269 1.23766 0.99493 0.93518 0.92621 1.68843 1.29837 1.03859 1.18630 1.23733 0.92337 0.95282 0.98035 0.89469 1.23151 1.01927 0.98552 0.94599 1.23704 0.94667 0.84168 1.00546 1.88852 1.70908 1.49285 1.23505 1.23180 1.01946 0.95923 0.81105 1.23992 1.02317 0.94548 0.89311 1.22560 0.99806 0.95364 0.84570 1.20809 0.82660 0.94872 0.94905 0.90135 1.21806 0.98719 0.98834 0.98978 1.44353 1.02438 1.64878 1.20163 1.19376 0.96408 1.35631 0.86873 0.91292 1.25660 0.99099 1.00713 0.98245 1.70100 1.25347 1.45277 1.15985 0.85510 0.78307 0.79071 0.78426 1.20716 1.22420 1.21075 0.92511 0.93501 0.91299 0.90542 0.91842 0.85893 0.90451 0.87493 0.91607 0.88042 0.90167 0.88289 0.90416 0.90806 0.86843 0.90015 0.91947 0.87760 0.94262 0.92732 0.96258 0.94335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.64 7.96 71.98 0.57 -4.07 16 2 C 0.15 6.33 3.23 45.03 0.15 6.47 16 3 H 0.01 0.40 7.40 -2.39 -0.02 0.38 16 4 C 0.11 4.07 5.90 86.41 0.51 4.58 16 5 N -0.60 -20.45 2.60 -817.18 -2.12 -22.57 16 6 C 0.53 17.59 7.14 87.65 0.63 18.22 16 7 O -0.58 -23.45 15.30 -3.06 -0.05 -23.50 16 8 C -0.15 -3.35 2.98 -10.90 -0.03 -3.39 16 9 C 0.03 0.72 6.86 86.41 0.59 1.31 16 10 N -0.49 -10.59 5.78 -873.75 -5.05 -15.64 16 11 C 0.02 0.25 2.32 45.91 0.11 0.36 16 12 H 0.09 0.99 7.77 -2.39 -0.02 0.97 16 13 C -0.14 -2.22 6.36 31.89 0.20 -2.02 16 14 C 0.05 0.68 7.72 72.66 0.56 1.24 16 15 O -0.41 -9.09 11.52 -148.98 -1.72 -10.81 16 16 C 0.06 1.02 7.25 72.36 0.52 1.55 16 17 C 0.03 0.51 7.03 86.36 0.61 1.12 16 18 C 0.10 3.29 5.92 86.56 0.51 3.80 16 19 C 0.17 7.28 2.33 45.18 0.11 7.38 16 20 H 0.08 3.86 6.00 -2.39 -0.01 3.84 16 21 C -0.12 -5.05 8.95 71.98 0.64 -4.41 16 22 N -0.60 -27.28 2.68 -649.88 -1.74 -29.03 16 23 C -0.25 -12.73 8.59 84.03 0.72 -12.00 16 24 H 0.07 3.42 6.24 -2.91 -0.02 3.40 16 25 C -0.04 -2.12 4.99 84.86 0.42 -1.70 16 26 N -0.92 -49.41 9.99 21.65 0.22 -49.19 16 27 Si 0.96 42.55 29.58 68.60 2.03 44.58 16 28 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 29 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 30 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 31 H 0.06 2.05 7.33 -2.39 -0.02 2.03 16 32 H 0.05 1.85 7.73 -2.39 -0.02 1.84 16 33 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.08 2.86 6.99 -2.38 -0.02 2.84 16 35 H 0.06 2.29 8.12 -2.39 -0.02 2.27 16 36 H 0.12 2.43 7.23 -2.39 -0.02 2.41 16 37 H 0.08 2.03 7.41 -2.39 -0.02 2.01 16 38 H 0.11 1.47 7.86 -2.39 -0.02 1.45 16 39 H 0.07 1.35 8.06 -2.39 -0.02 1.33 16 40 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.07 1.60 7.81 -2.39 -0.02 1.59 16 45 H 0.11 1.37 7.75 -2.38 -0.02 1.35 16 46 H 0.08 1.76 8.09 -2.39 -0.02 1.74 16 47 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 48 H 0.10 2.66 5.66 -2.39 -0.01 2.65 16 49 H 0.04 1.88 7.16 -2.39 -0.02 1.87 16 50 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 51 H 0.02 0.76 7.04 -2.39 -0.02 0.75 16 52 H 0.25 13.11 8.31 -92.71 -0.77 12.34 16 Total: -1.00 -65.85 391.24 -0.72 -66.56 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 0.90 Total: 21.17 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 6.82 Total: 18.43 kcal Atomic # 7 Polarization: -107.73 SS G_CDS: -8.70 Total: -116.43 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -1.76 Total: -34.31 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -65.85 -0.72 -66.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898131864.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.654 kcal (2) G-P(sol) polarization free energy of solvation -65.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds