Wall clock time and date at job start Tue Mar 31 2020 20:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.60893 * 2 1 4 4 C 1.53364 * 109.60812 * 239.48341 * 2 1 3 5 5 N 1.46971 * 108.63393 * 190.83151 * 4 2 1 6 6 C 1.34776 * 120.59510 * 235.22710 * 5 4 2 7 7 O 1.21281 * 120.00125 * 179.97438 * 6 5 4 8 8 C 1.50705 * 119.99658 * 0.02562 * 6 5 4 9 9 C 1.53935 * 113.73181 * 278.76359 * 8 6 5 10 10 N 1.48193 * 86.10029 * 221.96150 * 9 8 6 11 11 C 1.46900 * 111.06955 * 137.52484 * 10 9 8 12 12 H 1.08998 * 110.80585 * 315.99543 * 11 10 9 13 13 C 1.54816 * 110.90491 * 192.37214 * 11 10 9 14 14 C 1.54095 * 104.18637 * 220.92014 * 13 11 10 15 15 O 1.43740 * 107.29727 * 357.97222 * 14 13 11 16 16 C 1.44377 * 106.97414 * 26.51241 * 15 14 13 17 17 C 1.47957 * 90.80009 * 24.60112 * 10 9 8 18 18 C 1.46966 * 118.81073 * 55.23008 * 5 4 2 19 19 C 1.53373 * 108.63395 * 304.76988 * 18 5 4 20 20 H 1.09003 * 109.60841 * 289.68542 * 19 18 5 21 21 C 1.52996 * 109.61073 * 169.16936 * 19 18 5 22 22 N 1.46970 * 109.60704 * 120.33792 * 2 1 3 23 23 C 1.36930 * 120.59670 * 354.99493 * 22 2 1 24 24 H 1.08000 * 120.00340 * 53.80501 * 23 22 2 25 25 C 1.38813 * 119.99919 * 233.80646 * 23 22 2 26 26 N 1.31622 * 120.00034 * 20.18412 * 25 23 22 27 27 Si 1.86802 * 119.99963 * 200.19323 * 25 23 22 28 28 H 1.48499 * 109.47114 * 359.97438 * 27 25 23 29 29 H 1.48499 * 109.47425 * 119.99863 * 27 25 23 30 30 H 1.48507 * 109.46657 * 239.99761 * 27 25 23 31 31 H 1.09001 * 109.47261 * 299.66101 * 1 2 3 32 32 H 1.09001 * 109.46998 * 179.66492 * 1 2 3 33 33 H 1.08990 * 109.47176 * 59.65951 * 1 2 3 34 34 H 1.08998 * 109.61448 * 310.57740 * 4 2 1 35 35 H 1.09001 * 109.61259 * 71.08836 * 4 2 1 36 36 H 1.08989 * 112.94010 * 50.33339 * 8 6 5 37 37 H 1.08998 * 113.76387 * 336.23788 * 9 8 6 38 38 H 1.09001 * 113.75764 * 107.60948 * 9 8 6 39 39 H 1.09000 * 110.48837 * 339.59719 * 13 11 10 40 40 H 1.09006 * 110.48721 * 102.11124 * 13 11 10 41 41 H 1.08996 * 109.87586 * 117.39816 * 14 13 11 42 42 H 1.09004 * 109.87875 * 238.39589 * 14 13 11 43 43 H 1.09000 * 110.61864 * 201.43994 * 16 15 14 44 44 H 1.08999 * 110.62086 * 78.43944 * 16 15 14 45 45 H 1.08999 * 113.75986 * 221.08763 * 17 10 9 46 46 H 1.09000 * 113.75786 * 89.71706 * 17 10 9 47 47 H 1.09005 * 109.60787 * 185.02872 * 18 5 4 48 48 H 1.08998 * 109.75113 * 64.60077 * 18 5 4 49 49 H 1.09005 * 109.47137 * 292.48027 * 21 19 18 50 50 H 1.09001 * 109.46983 * 52.47479 * 21 19 18 51 51 H 1.08995 * 109.47244 * 172.47704 * 21 19 18 52 52 H 0.97002 * 119.99923 * 184.87305 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0267 0.0000 4 6 2.0447 -0.7336 -1.2446 5 7 3.4908 -0.9506 -1.0973 6 6 4.3493 -0.5161 -2.0411 7 8 5.5406 -0.7006 -1.9084 8 6 3.8288 0.2000 -3.2608 9 6 3.2987 -0.7445 -4.3546 10 7 3.9860 0.1485 -5.3170 11 6 4.6808 -0.6268 -6.3534 12 1 5.2158 -1.4686 -5.9138 13 6 5.6418 0.2746 -7.1664 14 6 5.4596 -0.1958 -8.6224 15 8 4.5256 -1.2883 -8.6049 16 6 3.6886 -1.1086 -7.4423 17 6 4.9277 0.5915 -4.2653 18 6 3.9840 -1.6499 0.0975 19 6 3.4693 -0.9163 1.3421 20 1 3.9757 0.0444 1.4360 21 6 3.7370 -1.7657 2.5862 22 7 2.0232 -0.6993 1.1949 23 6 1.1510 -1.1412 2.1535 24 1 0.3216 -1.7757 1.8779 25 6 1.3328 -0.7736 3.4797 26 7 2.0625 0.2808 3.7763 27 14 0.5419 -1.7757 4.8435 28 1 -0.2221 -2.9026 4.2504 29 1 1.5974 -2.3106 5.7407 30 1 -0.3789 -0.9101 5.6235 31 1 -0.3634 0.5086 0.8930 32 1 -0.3633 -1.0277 -0.0060 33 1 -0.3633 0.5191 -0.8868 34 1 1.5383 -1.6942 -1.3386 35 1 1.8540 -0.1285 -2.1309 36 1 3.1473 1.0147 -3.0166 37 1 3.7199 -1.7488 -4.3097 38 1 2.2128 -0.7413 -4.4491 39 1 5.3588 1.3224 -7.0657 40 1 6.6715 0.1255 -6.8411 41 1 5.0650 0.6195 -9.2286 42 1 6.4155 -0.5290 -9.0266 43 1 3.2282 -2.0528 -7.1512 44 1 2.9277 -0.3512 -7.6304 45 1 5.1409 1.6601 -4.2885 46 1 5.8263 -0.0213 -4.1941 47 1 5.0741 -1.6499 0.0975 48 1 3.6182 -2.6767 0.1006 49 1 3.1188 -2.6629 2.5535 50 1 4.7889 -2.0501 2.6125 51 1 3.4940 -1.1893 3.4788 52 1 2.2482 0.4969 4.7035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898131865.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:26 Heat of formation + Delta-G solvation = -7.344118 kcal Electronic energy + Delta-G solvation = -31036.889819 eV Core-core repulsion = 27038.639236 eV Total energy + Delta-G solvation = -3998.250583 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.03451 -39.55505 -38.36419 -37.10874 -34.30532 -32.92850 -32.53087 -31.37730 -29.93840 -27.97895 -27.50867 -26.32453 -26.12287 -25.45500 -23.83232 -22.75407 -21.75311 -20.47921 -20.38184 -19.53624 -18.60631 -17.34361 -17.05902 -16.58722 -16.08211 -15.81774 -15.37569 -15.27331 -15.04201 -14.55035 -14.46943 -14.19015 -14.06129 -13.76498 -13.60643 -13.10773 -12.99037 -12.89167 -12.58618 -12.47878 -12.06531 -11.83360 -11.66616 -11.52080 -11.45236 -11.35684 -11.21758 -11.02149 -10.92122 -10.86851 -10.79849 -10.57908 -10.51936 -10.37267 -10.09213 -9.99107 -9.94713 -9.75567 -9.46338 -9.10649 -8.41686 -8.02313 -6.48146 -5.80268 -3.65136 2.81740 3.25292 3.26178 3.37069 3.38664 3.47762 3.77220 4.09297 4.33243 4.36727 4.51036 4.55750 4.66852 4.81557 4.92166 4.99041 5.12023 5.13107 5.20156 5.21839 5.36971 5.41038 5.42044 5.49442 5.53533 5.57229 5.62959 5.66638 5.67705 5.85909 5.88840 5.97702 6.01566 6.12026 6.24503 6.25482 6.34409 6.44462 6.45940 6.53642 6.72929 6.75901 6.83846 6.94143 7.01362 7.15872 7.38719 7.63912 7.77663 7.85718 8.47238 8.52382 9.09912 9.62868 10.39820 11.08042 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.028391 B = 0.002501 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.989640 B =11192.225979 C =11611.071424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.155 3.845 3 H 0.029 0.971 4 C 0.093 3.907 5 N -0.592 5.592 6 C 0.515 3.485 7 O -0.557 6.557 8 C -0.140 4.140 9 C 0.021 3.979 10 N -0.469 5.469 11 C 0.015 3.985 12 H 0.066 0.934 13 C -0.149 4.149 14 C 0.050 3.950 15 O -0.380 6.380 16 C 0.059 3.941 17 C 0.029 3.971 18 C 0.093 3.907 19 C 0.184 3.816 20 H 0.031 0.969 21 C -0.144 4.144 22 N -0.576 5.576 23 C -0.264 4.264 24 H 0.054 0.946 25 C 0.037 3.963 26 N -0.871 5.871 27 Si 0.881 3.119 28 H -0.273 1.273 29 H -0.285 1.285 30 H -0.288 1.288 31 H 0.068 0.932 32 H 0.053 0.947 33 H 0.037 0.963 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.123 0.877 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.073 0.927 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.078 0.922 48 H 0.061 0.939 49 H 0.052 0.948 50 H 0.023 0.977 51 H 0.091 0.909 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.929 -0.212 -18.446 18.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.047 0.953 4 C -0.031 4.031 5 N -0.322 5.322 6 C 0.302 3.698 7 O -0.436 6.436 8 C -0.161 4.161 9 C -0.108 4.108 10 N -0.193 5.193 11 C -0.095 4.095 12 H 0.084 0.916 13 C -0.187 4.187 14 C -0.027 4.027 15 O -0.298 6.298 16 C -0.018 4.018 17 C -0.100 4.100 18 C -0.031 4.031 19 C 0.077 3.923 20 H 0.049 0.951 21 C -0.202 4.202 22 N -0.300 5.300 23 C -0.394 4.394 24 H 0.072 0.928 25 C -0.165 4.165 26 N -0.511 5.511 27 Si 0.709 3.291 28 H -0.197 1.197 29 H -0.211 1.211 30 H -0.214 1.214 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.141 0.859 37 H 0.093 0.907 38 H 0.118 0.882 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.101 0.899 43 H 0.109 0.891 44 H 0.091 0.909 45 H 0.113 0.887 46 H 0.103 0.897 47 H 0.096 0.904 48 H 0.079 0.921 49 H 0.071 0.929 50 H 0.042 0.958 51 H 0.110 0.890 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.155 0.115 -18.760 19.024 hybrid contribution 0.184 -0.858 1.461 1.704 sum 3.339 -0.743 -17.299 17.634 Atomic orbital electron populations 1.21659 0.94927 1.01461 1.00537 1.20865 0.93586 0.93748 0.87042 0.95324 1.22508 0.79656 1.00907 1.00067 1.48036 1.07391 1.56052 1.20693 1.20317 0.86267 0.79286 0.83886 1.90643 1.15806 1.58627 1.78541 1.23156 1.00082 1.00130 0.92755 1.23936 1.01492 0.95570 0.89846 1.68633 1.18359 1.26097 1.06169 1.23812 0.95246 0.95909 0.94529 0.91556 1.22941 0.99958 1.01182 0.94619 1.23106 0.93595 0.89825 0.96186 1.88871 1.47918 1.47068 1.45940 1.23481 0.93077 1.01587 0.83685 1.23796 0.95109 1.02757 0.88329 1.22501 0.99307 0.95768 0.85499 1.20586 0.85466 0.95323 0.90878 0.95108 1.22009 0.97088 1.00595 1.00538 1.43971 1.01027 1.65010 1.20031 1.18689 1.09386 1.24582 0.86703 0.92831 1.25543 0.97474 0.94413 0.99091 1.70185 1.40354 1.22614 1.17899 0.86615 0.79302 0.80515 0.82663 1.19748 1.21070 1.21436 0.91330 0.92835 0.94433 0.91623 0.90939 0.85879 0.90711 0.88191 0.89473 0.90444 0.92183 0.89888 0.89084 0.90926 0.88738 0.89657 0.90402 0.92105 0.92885 0.95753 0.89027 0.93535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.18 37.16 0.30 -1.93 16 2 C 0.15 2.98 3.65 -67.49 -0.25 2.73 16 3 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 4 C 0.09 1.46 5.79 -3.60 -0.02 1.44 16 5 N -0.59 -10.22 2.95 -172.48 -0.51 -10.72 16 6 C 0.52 8.49 7.23 -10.98 -0.08 8.41 16 7 O -0.56 -10.90 15.31 5.56 0.09 -10.81 16 8 C -0.14 -1.71 2.89 -90.83 -0.26 -1.97 16 9 C 0.02 0.21 7.11 -2.63 -0.02 0.19 16 10 N -0.47 -4.74 5.99 -227.72 -1.36 -6.10 16 11 C 0.01 0.14 2.37 -65.70 -0.16 -0.02 16 12 H 0.07 0.69 7.79 -51.93 -0.40 0.29 16 13 C -0.15 -1.23 6.21 -25.20 -0.16 -1.39 16 14 C 0.05 0.41 7.70 37.73 0.29 0.70 16 15 O -0.38 -4.08 11.52 -35.23 -0.41 -4.48 16 16 C 0.06 0.55 7.23 38.21 0.28 0.82 16 17 C 0.03 0.32 6.83 -2.76 -0.02 0.30 16 18 C 0.09 1.79 5.90 -3.59 -0.02 1.77 16 19 C 0.18 4.08 3.24 -67.48 -0.22 3.86 16 20 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 21 C -0.14 -3.17 7.83 37.16 0.29 -2.88 16 22 N -0.58 -13.12 2.74 -157.02 -0.43 -13.55 16 23 C -0.26 -6.51 6.61 -15.06 -0.10 -6.61 16 24 H 0.05 1.34 7.18 -52.49 -0.38 0.97 16 25 C 0.04 0.95 3.31 -17.43 -0.06 0.89 16 26 N -0.87 -23.58 11.66 55.49 0.65 -22.93 16 27 Si 0.88 20.02 29.60 -169.99 -5.03 14.98 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 29 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 30 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 31 H 0.07 1.37 7.71 -51.93 -0.40 0.97 16 32 H 0.05 0.93 7.49 -51.93 -0.39 0.54 16 33 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 35 H 0.07 0.91 5.65 -51.93 -0.29 0.62 16 36 H 0.12 1.42 7.32 -51.94 -0.38 1.04 16 37 H 0.07 0.81 7.68 -51.93 -0.40 0.41 16 38 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 0.71 8.06 -51.93 -0.42 0.29 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.09 1.08 7.19 -51.93 -0.37 0.70 16 47 H 0.08 1.53 6.99 -51.93 -0.36 1.17 16 48 H 0.06 1.15 8.11 -51.93 -0.42 0.73 16 49 H 0.05 1.16 7.54 -51.93 -0.39 0.77 16 50 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 51 H 0.09 2.26 4.92 -51.93 -0.26 2.00 16 52 H 0.25 6.68 8.32 -40.82 -0.34 6.34 16 LS Contribution 392.81 15.07 5.92 5.92 Total: -1.00 -29.04 392.81 -10.36 -39.40 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -9.07 Total: 1.98 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -0.19 Total: 6.32 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: -1.66 Total: -53.31 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.32 Total: -15.29 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.03 Total: 14.98 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.04 -10.36 -39.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898131865.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.055 kcal (2) G-P(sol) polarization free energy of solvation -29.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds