Wall clock time and date at job start Tue Mar 31 2020 20:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.60893 * 2 1 4 4 C 1.53364 * 109.60812 * 239.48341 * 2 1 3 5 5 N 1.46971 * 108.63393 * 190.83151 * 4 2 1 6 6 C 1.34776 * 120.59510 * 235.22710 * 5 4 2 7 7 O 1.21281 * 120.00125 * 179.97438 * 6 5 4 8 8 C 1.50705 * 119.99658 * 0.02562 * 6 5 4 9 9 C 1.53935 * 113.73181 * 278.76359 * 8 6 5 10 10 N 1.48193 * 86.10029 * 221.96150 * 9 8 6 11 11 C 1.46900 * 111.06955 * 137.52484 * 10 9 8 12 12 H 1.08998 * 110.80585 * 315.99543 * 11 10 9 13 13 C 1.54816 * 110.90491 * 192.37214 * 11 10 9 14 14 C 1.54095 * 104.18637 * 220.92014 * 13 11 10 15 15 O 1.43740 * 107.29727 * 357.97222 * 14 13 11 16 16 C 1.44377 * 106.97414 * 26.51241 * 15 14 13 17 17 C 1.47957 * 90.80009 * 24.60112 * 10 9 8 18 18 C 1.46966 * 118.81073 * 55.23008 * 5 4 2 19 19 C 1.53373 * 108.63395 * 304.76988 * 18 5 4 20 20 H 1.09003 * 109.60841 * 289.68542 * 19 18 5 21 21 C 1.52996 * 109.61073 * 169.16936 * 19 18 5 22 22 N 1.46970 * 109.60704 * 120.33792 * 2 1 3 23 23 C 1.36930 * 120.59670 * 354.99493 * 22 2 1 24 24 H 1.08000 * 120.00340 * 53.80501 * 23 22 2 25 25 C 1.38813 * 119.99919 * 233.80646 * 23 22 2 26 26 N 1.31622 * 120.00034 * 20.18412 * 25 23 22 27 27 Si 1.86802 * 119.99963 * 200.19323 * 25 23 22 28 28 H 1.48499 * 109.47114 * 359.97438 * 27 25 23 29 29 H 1.48499 * 109.47425 * 119.99863 * 27 25 23 30 30 H 1.48507 * 109.46657 * 239.99761 * 27 25 23 31 31 H 1.09001 * 109.47261 * 299.66101 * 1 2 3 32 32 H 1.09001 * 109.46998 * 179.66492 * 1 2 3 33 33 H 1.08990 * 109.47176 * 59.65951 * 1 2 3 34 34 H 1.08998 * 109.61448 * 310.57740 * 4 2 1 35 35 H 1.09001 * 109.61259 * 71.08836 * 4 2 1 36 36 H 1.08989 * 112.94010 * 50.33339 * 8 6 5 37 37 H 1.08998 * 113.76387 * 336.23788 * 9 8 6 38 38 H 1.09001 * 113.75764 * 107.60948 * 9 8 6 39 39 H 1.09000 * 110.48837 * 339.59719 * 13 11 10 40 40 H 1.09006 * 110.48721 * 102.11124 * 13 11 10 41 41 H 1.08996 * 109.87586 * 117.39816 * 14 13 11 42 42 H 1.09004 * 109.87875 * 238.39589 * 14 13 11 43 43 H 1.09000 * 110.61864 * 201.43994 * 16 15 14 44 44 H 1.08999 * 110.62086 * 78.43944 * 16 15 14 45 45 H 1.08999 * 113.75986 * 221.08763 * 17 10 9 46 46 H 1.09000 * 113.75786 * 89.71706 * 17 10 9 47 47 H 1.09005 * 109.60787 * 185.02872 * 18 5 4 48 48 H 1.08998 * 109.75113 * 64.60077 * 18 5 4 49 49 H 1.09005 * 109.47137 * 292.48027 * 21 19 18 50 50 H 1.09001 * 109.46983 * 52.47479 * 21 19 18 51 51 H 1.08995 * 109.47244 * 172.47704 * 21 19 18 52 52 H 0.97002 * 119.99923 * 184.87305 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0267 0.0000 4 6 2.0447 -0.7336 -1.2446 5 7 3.4908 -0.9506 -1.0973 6 6 4.3493 -0.5161 -2.0411 7 8 5.5406 -0.7006 -1.9084 8 6 3.8288 0.2000 -3.2608 9 6 3.2987 -0.7445 -4.3546 10 7 3.9860 0.1485 -5.3170 11 6 4.6808 -0.6268 -6.3534 12 1 5.2158 -1.4686 -5.9138 13 6 5.6418 0.2746 -7.1664 14 6 5.4596 -0.1958 -8.6224 15 8 4.5256 -1.2883 -8.6049 16 6 3.6886 -1.1086 -7.4423 17 6 4.9277 0.5915 -4.2653 18 6 3.9840 -1.6499 0.0975 19 6 3.4693 -0.9163 1.3421 20 1 3.9757 0.0444 1.4360 21 6 3.7370 -1.7657 2.5862 22 7 2.0232 -0.6993 1.1949 23 6 1.1510 -1.1412 2.1535 24 1 0.3216 -1.7757 1.8779 25 6 1.3328 -0.7736 3.4797 26 7 2.0625 0.2808 3.7763 27 14 0.5419 -1.7757 4.8435 28 1 -0.2221 -2.9026 4.2504 29 1 1.5974 -2.3106 5.7407 30 1 -0.3789 -0.9101 5.6235 31 1 -0.3634 0.5086 0.8930 32 1 -0.3633 -1.0277 -0.0060 33 1 -0.3633 0.5191 -0.8868 34 1 1.5383 -1.6942 -1.3386 35 1 1.8540 -0.1285 -2.1309 36 1 3.1473 1.0147 -3.0166 37 1 3.7199 -1.7488 -4.3097 38 1 2.2128 -0.7413 -4.4491 39 1 5.3588 1.3224 -7.0657 40 1 6.6715 0.1255 -6.8411 41 1 5.0650 0.6195 -9.2286 42 1 6.4155 -0.5290 -9.0266 43 1 3.2282 -2.0528 -7.1512 44 1 2.9277 -0.3512 -7.6304 45 1 5.1409 1.6601 -4.2885 46 1 5.8263 -0.0213 -4.1941 47 1 5.0741 -1.6499 0.0975 48 1 3.6182 -2.6767 0.1006 49 1 3.1188 -2.6629 2.5535 50 1 4.7889 -2.0501 2.6125 51 1 3.4940 -1.1893 3.4788 52 1 2.2482 0.4969 4.7035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898131865.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:24 Heat of formation + Delta-G solvation = -27.076114 kcal Electronic energy + Delta-G solvation = -31037.745462 eV Core-core repulsion = 27038.639236 eV Total energy + Delta-G solvation = -3999.106226 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.03319 -40.62370 -39.45238 -38.51201 -35.91944 -34.46804 -33.52265 -33.02641 -30.68243 -29.58831 -28.70155 -27.53185 -27.14829 -26.96159 -25.42522 -23.50236 -22.77271 -22.02422 -21.45968 -20.97682 -19.82357 -18.61995 -17.90877 -17.80149 -17.39177 -16.95840 -16.81702 -16.38027 -16.25941 -16.09455 -15.66413 -15.44581 -15.27329 -14.99807 -14.80428 -14.45103 -14.05718 -13.93198 -13.70272 -13.64796 -13.43819 -13.33936 -13.21555 -12.91000 -12.67501 -12.52642 -12.47774 -12.29882 -12.23506 -12.19505 -12.05249 -11.97207 -11.76816 -11.72439 -11.64696 -11.63116 -11.45595 -10.79352 -10.68019 -10.19551 -9.97529 -9.65566 -8.38938 -7.68445 -5.60889 1.43261 1.50243 1.54331 1.57189 2.01603 2.49961 2.62111 3.03799 3.23828 3.28885 3.47560 3.51934 3.57467 3.79147 3.90030 4.03643 4.09256 4.14179 4.25246 4.32234 4.35131 4.36567 4.40235 4.50255 4.52412 4.64518 4.66310 4.69353 4.73596 4.77195 4.80450 4.83607 4.84965 4.86923 4.88905 4.97397 4.98152 5.01749 5.06831 5.18435 5.20992 5.40378 5.51292 5.57577 5.69017 5.74440 5.75419 5.85942 5.98633 6.51469 6.58477 7.14371 7.23045 7.78516 8.51528 9.13507 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.028391 B = 0.002501 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.989640 B =11192.225979 C =11611.071424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.145 3.855 3 H 0.006 0.994 4 C 0.105 3.895 5 N -0.598 5.598 6 C 0.513 3.487 7 O -0.592 6.592 8 C -0.137 4.137 9 C 0.028 3.972 10 N -0.460 5.460 11 C 0.013 3.987 12 H 0.055 0.945 13 C -0.146 4.146 14 C 0.047 3.953 15 O -0.402 6.402 16 C 0.061 3.939 17 C 0.031 3.969 18 C 0.107 3.893 19 C 0.186 3.814 20 H -0.008 1.008 21 C -0.137 4.137 22 N -0.591 5.591 23 C -0.256 4.256 24 H 0.054 0.946 25 C -0.003 4.003 26 N -0.907 5.907 27 Si 0.933 3.067 28 H -0.263 1.263 29 H -0.288 1.288 30 H -0.294 1.294 31 H 0.035 0.965 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.112 0.888 36 H 0.139 0.861 37 H 0.069 0.931 38 H 0.125 0.875 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.105 0.895 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.068 0.932 49 H 0.051 0.949 50 H 0.043 0.957 51 H 0.065 0.935 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.763 -0.677 -20.952 21.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.039 3.961 3 H 0.024 0.976 4 C -0.018 4.018 5 N -0.328 5.328 6 C 0.303 3.697 7 O -0.474 6.474 8 C -0.159 4.159 9 C -0.101 4.101 10 N -0.184 5.184 11 C -0.096 4.096 12 H 0.073 0.927 13 C -0.183 4.183 14 C -0.030 4.030 15 O -0.320 6.320 16 C -0.016 4.016 17 C -0.098 4.098 18 C -0.018 4.018 19 C 0.079 3.921 20 H 0.009 0.991 21 C -0.196 4.196 22 N -0.316 5.316 23 C -0.386 4.386 24 H 0.071 0.929 25 C -0.202 4.202 26 N -0.549 5.549 27 Si 0.761 3.239 28 H -0.187 1.187 29 H -0.215 1.215 30 H -0.221 1.221 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.130 0.870 36 H 0.157 0.843 37 H 0.087 0.913 38 H 0.143 0.857 39 H 0.109 0.891 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.111 0.889 43 H 0.116 0.884 44 H 0.095 0.905 45 H 0.123 0.877 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.086 0.914 49 H 0.070 0.930 50 H 0.062 0.938 51 H 0.083 0.917 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.965 -0.358 -21.301 21.394 hybrid contribution 0.589 -0.674 2.198 2.373 sum 2.554 -1.032 -19.103 19.300 Atomic orbital electron populations 1.21557 0.93339 1.01697 1.00948 1.21082 0.94973 0.92786 0.87272 0.97580 1.22454 0.78377 1.01601 0.99368 1.48136 1.08352 1.56065 1.20230 1.21074 0.85654 0.78466 0.84556 1.90627 1.17481 1.59817 1.79432 1.23243 1.00970 1.00669 0.90996 1.24001 1.02883 0.94814 0.88427 1.68662 1.17799 1.26080 1.05811 1.23805 0.95590 0.95762 0.94475 0.92713 1.22930 0.99861 1.01069 0.94485 1.23247 0.93798 0.89660 0.96279 1.88849 1.48582 1.48138 1.46479 1.23512 0.92867 1.02090 0.83127 1.23758 0.94478 1.03157 0.88439 1.22122 0.98707 0.95784 0.85195 1.20444 0.85309 0.93831 0.92475 0.99061 1.21885 0.98323 0.99889 0.99460 1.44221 1.00950 1.65532 1.20888 1.18836 1.09042 1.23606 0.87161 0.92863 1.26067 0.98213 0.95097 1.00842 1.70288 1.42517 1.24384 1.17730 0.85795 0.78275 0.79436 0.80438 1.18700 1.21482 1.22132 0.94621 0.92622 0.90280 0.90518 0.86982 0.84332 0.91285 0.85689 0.89108 0.90153 0.91119 0.88865 0.88446 0.90451 0.87658 0.91311 0.91205 0.91361 0.93017 0.93773 0.91673 0.94120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.87 8.18 71.98 0.59 -3.28 16 2 C 0.15 5.42 3.65 45.02 0.16 5.58 16 3 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 4 C 0.11 2.99 5.79 86.41 0.50 3.49 16 5 N -0.60 -19.79 2.95 -818.00 -2.41 -22.20 16 6 C 0.51 16.20 7.23 87.66 0.63 16.83 16 7 O -0.59 -23.03 15.31 -3.03 -0.05 -23.08 16 8 C -0.14 -2.99 2.89 -10.89 -0.03 -3.02 16 9 C 0.03 0.47 7.11 86.36 0.61 1.09 16 10 N -0.46 -7.99 5.99 -874.36 -5.23 -13.22 16 11 C 0.01 0.23 2.37 46.22 0.11 0.34 16 12 H 0.05 1.07 7.79 -2.39 -0.02 1.05 16 13 C -0.15 -2.12 6.21 31.58 0.20 -1.92 16 14 C 0.05 0.67 7.70 72.35 0.56 1.23 16 15 O -0.40 -7.88 11.52 -148.98 -1.72 -9.60 16 16 C 0.06 0.99 7.23 72.66 0.53 1.52 16 17 C 0.03 0.62 6.83 86.41 0.59 1.21 16 18 C 0.11 4.06 5.90 86.42 0.51 4.57 16 19 C 0.19 8.40 3.24 45.03 0.15 8.55 16 20 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 21 C -0.14 -6.15 7.83 71.98 0.56 -5.58 16 22 N -0.59 -26.98 2.74 -650.69 -1.79 -28.77 16 23 C -0.26 -12.66 6.61 84.03 0.56 -12.10 16 24 H 0.05 2.63 7.18 -2.91 -0.02 2.61 16 25 C 0.00 -0.16 3.31 84.86 0.28 0.12 16 26 N -0.91 -50.70 11.66 21.65 0.25 -50.45 16 27 Si 0.93 41.59 29.60 68.60 2.03 43.62 16 28 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 29 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 30 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 31 H 0.03 1.39 7.71 -2.39 -0.02 1.37 16 32 H 0.05 1.80 7.49 -2.39 -0.02 1.78 16 33 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.08 2.08 8.12 -2.39 -0.02 2.06 16 35 H 0.11 2.31 5.65 -2.39 -0.01 2.29 16 36 H 0.14 2.65 7.32 -2.39 -0.02 2.63 16 37 H 0.07 1.31 7.68 -2.39 -0.02 1.29 16 38 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.09 1.26 8.06 -2.39 -0.02 1.24 16 40 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 41 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 43 H 0.10 1.42 8.14 -2.39 -0.02 1.41 16 44 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.07 1.67 7.19 -2.39 -0.02 1.65 16 47 H 0.07 2.77 6.99 -2.38 -0.02 2.75 16 48 H 0.07 2.50 8.11 -2.39 -0.02 2.48 16 49 H 0.05 2.27 7.54 -2.38 -0.02 2.25 16 50 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 51 H 0.06 3.30 4.92 -2.39 -0.01 3.29 16 52 H 0.25 13.61 8.32 -92.71 -0.77 12.83 16 Total: -1.00 -64.78 392.81 -1.52 -66.30 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.89 Total: 18.77 kcal Atomic # 6 Polarization: 12.13 SS G_CDS: 6.50 Total: 18.63 kcal Atomic # 7 Polarization: -105.46 SS G_CDS: -9.18 Total: -114.64 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -1.76 Total: -32.68 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -64.78 -1.52 -66.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898131865.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.222 kcal (2) G-P(sol) polarization free energy of solvation -64.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds