Wall clock time and date at job start Tue Mar 31 2020 20:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.52288 * 2 1 4 4 C 1.53083 * 109.52501 * 239.80564 * 2 1 3 5 5 O 1.42901 * 109.41906 * 182.48509 * 4 2 1 6 6 C 1.42911 * 114.09300 * 61.16181 * 5 4 2 7 7 C 1.53092 * 109.41399 * 298.84023 * 6 5 4 8 8 C 1.53180 * 109.16150 * 57.61124 * 7 6 5 9 9 H 1.09005 * 109.54102 * 62.88628 * 8 7 6 10 10 C 1.50703 * 109.61317 * 183.10790 * 8 7 6 11 11 O 1.21284 * 119.99761 * 84.79924 * 10 8 7 12 12 N 1.34772 * 119.99970 * 264.78991 * 10 8 7 13 13 C 1.47082 * 120.88010 * 5.05764 * 12 10 8 14 14 C 1.53702 * 108.27767 * 128.75215 * 13 12 10 15 15 N 1.46894 * 109.25428 * 54.08185 * 14 13 12 16 16 C 1.46904 * 110.99678 * 172.60809 * 15 14 13 17 17 C 1.53950 * 113.74087 * 43.04187 * 16 15 14 18 18 N 1.47812 * 86.03372 * 222.08111 * 17 16 15 19 19 C 1.36931 * 134.45502 * 204.63941 * 18 17 16 20 20 H 1.08003 * 120.00318 * 179.87217 * 19 18 17 21 21 C 1.38821 * 120.00383 * 359.87343 * 19 18 17 22 22 N 1.31622 * 119.99569 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00157 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.47464 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46749 * 120.00113 * 23 21 19 26 26 H 1.48503 * 109.47307 * 239.99822 * 23 21 19 27 27 C 1.47583 * 91.05110 * 24.55148 * 18 17 16 28 28 C 1.46898 * 111.26879 * 296.75270 * 15 14 13 29 29 C 1.47073 * 120.88532 * 185.33032 * 12 10 8 30 30 H 1.08995 * 109.47061 * 299.87727 * 1 2 3 31 31 H 1.09000 * 109.46605 * 59.87876 * 1 2 3 32 32 H 1.09000 * 109.46990 * 179.87816 * 1 2 3 33 33 H 1.09004 * 109.48308 * 302.47559 * 4 2 1 34 34 H 1.09005 * 109.47879 * 62.50542 * 4 2 1 35 35 H 1.08994 * 109.48369 * 58.82584 * 6 5 4 36 36 H 1.09002 * 109.47882 * 178.86313 * 6 5 4 37 37 H 1.08999 * 109.52319 * 297.70404 * 7 6 5 38 38 H 1.09001 * 109.52179 * 177.51443 * 7 6 5 39 39 H 1.09001 * 109.62531 * 248.51799 * 13 12 10 40 40 H 1.09001 * 109.63000 * 9.09906 * 13 12 10 41 41 H 1.09004 * 109.64722 * 294.07615 * 14 13 12 42 42 H 1.09004 * 109.44133 * 173.96163 * 14 13 12 43 43 H 1.09001 * 112.94183 * 174.62841 * 16 15 14 44 44 H 1.08998 * 113.76918 * 336.34874 * 17 16 15 45 45 H 1.09004 * 113.77039 * 107.74419 * 17 16 15 46 46 H 0.96996 * 119.99803 * 180.02562 * 22 21 19 47 47 H 1.09002 * 113.76357 * 221.14976 * 27 18 17 48 48 H 1.08988 * 113.76965 * 89.75152 * 27 18 17 49 49 H 1.08991 * 109.49807 * 303.14802 * 28 15 14 50 50 H 1.09006 * 109.51618 * 183.08165 * 28 15 14 51 51 H 1.09008 * 109.62665 * 350.89780 * 29 12 10 52 52 H 1.09004 * 109.63214 * 111.47538 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0417 -0.7256 -1.2470 5 8 3.4695 -0.7750 -1.2157 6 6 4.0043 -1.4818 -0.0947 7 6 3.5716 -0.7865 1.1988 8 6 2.0418 -0.7246 1.2488 9 1 1.6367 -1.7362 1.2753 10 6 1.6059 0.0255 2.4811 11 8 1.5403 1.2364 2.4624 12 7 1.2889 -0.6493 3.6038 13 6 1.4663 -2.1072 3.6838 14 6 2.2671 -2.4262 4.9564 15 7 1.5987 -1.8179 6.1145 16 6 2.2312 -2.2428 7.3704 17 6 3.7699 -2.2428 7.3205 18 7 3.6913 -3.5262 8.0495 19 6 4.5387 -4.2117 8.8784 20 1 4.2345 -5.1595 9.2977 21 6 5.7887 -3.6887 9.1799 22 7 6.1592 -2.5334 8.6694 23 14 6.9442 -4.6235 10.3113 24 1 6.2951 -5.8853 10.7491 25 1 8.2000 -4.9398 9.5845 26 1 7.2566 -3.7889 11.4992 27 6 2.3328 -3.7708 7.5272 28 6 1.5741 -0.3531 6.0068 29 6 0.7507 0.0517 4.7794 30 1 -0.3633 0.5119 0.8910 31 1 -0.3632 0.5157 -0.8889 32 1 -0.3633 -1.0277 -0.0022 33 1 1.6431 -1.7400 -1.2666 34 1 1.7160 -0.1898 -2.1387 35 1 3.6315 -2.5060 -0.0990 36 1 5.0926 -1.4905 -0.1560 37 1 3.9780 0.2246 1.2224 38 1 3.9416 -1.3489 2.0560 39 1 0.4915 -2.5927 3.7296 40 1 2.0126 -2.4582 2.8083 41 1 3.2758 -2.0231 4.8654 42 1 2.3179 -3.5066 5.0918 43 1 1.8206 -1.7382 8.2450 44 1 4.1768 -2.3337 6.3134 45 1 4.2282 -1.4374 7.8946 46 1 7.0327 -2.1681 8.8798 47 1 1.6459 -4.1833 8.2662 48 1 2.3167 -4.3116 6.5811 49 1 2.5923 0.0211 5.9012 50 1 1.1222 0.0705 6.9037 51 1 0.8236 1.1288 4.6286 52 1 -0.2917 -0.2303 4.9285 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941555963.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:36 Heat of formation + Delta-G solvation = -10.684126 kcal Electronic energy + Delta-G solvation = -31103.676697 eV Core-core repulsion = 27105.281281 eV Total energy + Delta-G solvation = -3998.395417 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.91964 -39.51534 -38.56451 -36.63731 -34.66935 -33.82029 -32.54627 -31.86023 -31.04573 -28.29543 -27.34362 -26.56131 -25.55883 -24.91370 -23.76298 -22.73967 -22.61985 -21.62555 -20.42634 -19.24142 -18.36782 -17.39388 -16.87662 -16.49680 -16.47480 -15.67096 -15.51027 -15.26768 -15.06772 -14.90147 -14.80350 -14.51931 -14.22428 -14.14503 -13.77026 -13.38959 -13.30166 -12.62970 -12.47796 -12.38729 -12.29728 -12.24495 -12.09008 -11.89190 -11.73176 -11.63100 -11.25897 -11.22965 -11.04275 -10.90471 -10.85519 -10.78342 -10.62617 -10.56980 -10.20339 -10.08138 -9.92243 -9.54320 -9.51475 -8.85192 -8.73122 -7.87278 -6.90391 -5.81235 -3.14160 2.51324 2.85974 3.35200 3.40574 3.43309 3.59118 4.05919 4.21404 4.30063 4.43324 4.44899 4.58926 4.75420 4.89950 4.92814 5.00510 5.07021 5.09977 5.16987 5.19078 5.25210 5.28497 5.30392 5.36182 5.36796 5.44887 5.45525 5.50328 5.55333 5.62114 5.69053 5.74707 5.81412 5.82570 5.90712 5.95968 6.03520 6.06859 6.13034 6.27698 6.40273 6.51297 6.58060 6.89279 6.95598 7.16084 7.31147 7.34340 7.48234 7.57393 7.93146 8.09076 8.99439 9.66123 10.54258 11.35374 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016472 B = 0.002731 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.435708 B =10250.508668 C =11212.680983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 H 0.092 0.908 4 C 0.067 3.933 5 O -0.382 6.382 6 C 0.064 3.936 7 C -0.147 4.147 8 C -0.106 4.106 9 H 0.092 0.908 10 C 0.525 3.475 11 O -0.543 6.543 12 N -0.610 5.610 13 C 0.110 3.890 14 C 0.035 3.965 15 N -0.529 5.529 16 C 0.035 3.965 17 C 0.133 3.867 18 N -0.609 5.609 19 C -0.222 4.222 20 H 0.081 0.919 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.912 3.088 24 H -0.279 1.279 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.125 3.875 28 C 0.043 3.957 29 C 0.117 3.883 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.096 0.904 35 H 0.054 0.946 36 H 0.099 0.901 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.048 0.952 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.028 0.972 45 H 0.069 0.931 46 H 0.253 0.747 47 H 0.046 0.954 48 H 0.037 0.963 49 H 0.040 0.960 50 H 0.085 0.915 51 H 0.091 0.909 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.142 2.833 -17.953 21.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.130 4.130 3 H 0.111 0.889 4 C -0.010 4.010 5 O -0.300 6.300 6 C -0.013 4.013 7 C -0.185 4.185 8 C -0.127 4.127 9 H 0.110 0.890 10 C 0.313 3.687 11 O -0.420 6.420 12 N -0.344 5.344 13 C -0.013 4.013 14 C -0.094 4.094 15 N -0.253 5.253 16 C -0.074 4.074 17 C 0.007 3.993 18 N -0.336 5.336 19 C -0.350 4.350 20 H 0.099 0.901 21 C -0.205 4.205 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.204 1.204 25 H -0.218 1.218 26 H -0.217 1.217 27 C -0.002 4.002 28 C -0.086 4.086 29 C -0.005 4.005 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.114 0.886 35 H 0.072 0.928 36 H 0.117 0.883 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.066 0.934 42 H 0.112 0.888 43 H 0.118 0.882 44 H 0.046 0.954 45 H 0.087 0.913 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.055 0.945 49 H 0.059 0.941 50 H 0.103 0.897 51 H 0.110 0.890 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.262 3.342 -17.896 21.950 hybrid contribution 1.464 -0.493 0.981 1.830 sum -10.798 2.850 -16.916 20.270 Atomic orbital electron populations 1.21772 0.94159 1.01827 1.02671 1.21668 0.96567 1.01397 0.93360 0.88942 1.22668 0.81059 0.99578 0.97676 1.87952 1.20249 1.76460 1.45342 1.22588 0.99531 0.94391 0.84797 1.22176 0.93289 1.03522 0.99494 1.21476 0.97484 1.00371 0.93387 0.88959 1.20449 0.76451 0.87792 0.84000 1.90672 1.53469 1.13954 1.83911 1.48220 1.63999 1.08468 1.13689 1.22080 1.01080 0.79702 0.98448 1.22682 0.95931 1.01210 0.89562 1.62025 1.53912 1.06964 1.02391 1.24297 0.95343 0.97368 0.90369 1.22911 0.90890 0.90641 0.94906 1.45821 1.13794 1.21869 1.52066 1.19055 0.94904 1.01990 1.19010 0.90125 1.24796 0.97508 0.97487 1.00691 1.69835 1.20661 1.18703 1.47617 0.86048 0.80830 0.78854 0.80047 1.20414 1.21754 1.21672 1.22689 0.88050 0.93035 0.96383 1.22383 0.99346 0.89015 0.97881 1.21737 0.97350 0.97888 0.83546 0.91975 0.92091 0.92647 0.93034 0.88568 0.92815 0.88259 0.90036 0.90023 0.90569 0.89748 0.93414 0.88844 0.88167 0.95429 0.91285 0.93723 0.93614 0.94548 0.94120 0.89680 0.89033 0.90923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.99 37.16 0.33 -0.88 16 2 C -0.11 -1.04 2.14 -90.48 -0.19 -1.23 16 3 H 0.09 1.07 7.76 -51.93 -0.40 0.67 16 4 C 0.07 0.54 6.13 37.20 0.23 0.77 16 5 O -0.38 -3.90 10.77 -35.23 -0.38 -4.28 16 6 C 0.06 0.55 6.84 37.20 0.25 0.80 16 7 C -0.15 -1.44 5.34 -26.59 -0.14 -1.58 16 8 C -0.11 -1.04 1.30 -91.58 -0.12 -1.16 16 9 H 0.09 0.75 6.23 -51.93 -0.32 0.42 16 10 C 0.52 6.67 5.73 -10.99 -0.06 6.61 16 11 O -0.54 -8.71 15.34 5.55 0.09 -8.62 16 12 N -0.61 -7.33 3.00 -172.17 -0.52 -7.84 16 13 C 0.11 1.15 6.32 -3.36 -0.02 1.13 16 14 C 0.03 0.47 4.65 -3.46 -0.02 0.46 16 15 N -0.53 -7.74 4.77 -227.94 -1.09 -8.83 16 16 C 0.03 0.63 4.05 -69.92 -0.28 0.35 16 17 C 0.13 3.04 6.81 -2.84 -0.02 3.02 16 18 N -0.61 -15.26 3.70 -177.88 -0.66 -15.92 16 19 C -0.22 -6.15 10.70 -15.06 -0.16 -6.31 16 20 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 22 N -0.92 -27.19 11.39 55.49 0.63 -26.55 16 23 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 C 0.12 2.45 8.40 -2.97 -0.02 2.43 16 28 C 0.04 0.58 5.55 -3.70 -0.02 0.56 16 29 C 0.12 1.43 6.61 -3.61 -0.02 1.41 16 30 H 0.06 0.64 7.08 -51.93 -0.37 0.27 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.08 0.79 7.98 -51.93 -0.41 0.37 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.72 5.51 -51.93 -0.29 0.43 16 41 H 0.05 0.75 6.38 -51.93 -0.33 0.42 16 42 H 0.09 1.31 5.81 -51.93 -0.30 1.00 16 43 H 0.10 1.83 8.11 -51.93 -0.42 1.40 16 44 H 0.03 0.65 5.76 -51.93 -0.30 0.35 16 45 H 0.07 1.80 7.16 -51.93 -0.37 1.43 16 46 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 47 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.04 0.68 5.93 -51.94 -0.31 0.37 16 49 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 50 H 0.08 1.07 8.09 -51.93 -0.42 0.65 16 51 H 0.09 1.18 7.04 -51.92 -0.37 0.82 16 52 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 389.46 15.07 5.87 5.87 Total: -1.00 -32.70 389.46 -10.26 -42.96 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -8.81 Total: 0.22 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -0.37 Total: 6.04 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -1.63 Total: -59.15 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.29 Total: -12.90 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.70 -10.26 -42.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941555963.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.273 kcal (2) G-P(sol) polarization free energy of solvation -32.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds