Wall clock time and date at job start Tue Mar 31 2020 21:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.47541 * 2 1 4 4 N 1.46508 * 109.47179 * 120.00141 * 2 1 3 5 5 C 1.34770 * 119.99519 * 274.99953 * 4 2 1 6 6 O 1.21277 * 120.00327 * 359.97438 * 5 4 2 7 7 C 1.50709 * 119.99813 * 179.97438 * 5 4 2 8 8 H 1.08999 * 110.85428 * 297.66318 * 7 5 4 9 9 C 1.54628 * 110.96762 * 61.45104 * 7 5 4 10 10 C 1.51275 * 104.19635 * 93.32329 * 9 7 5 11 11 O 1.21281 * 124.94615 * 196.23224 * 10 9 7 12 12 N 1.34424 * 110.11780 * 16.25019 * 10 9 7 13 13 C 1.46500 * 124.35300 * 180.14254 * 12 10 9 14 14 C 1.53002 * 109.46982 * 0.02562 * 13 12 10 15 15 C 1.52998 * 109.47006 * 120.02592 * 13 12 10 16 16 C 1.53001 * 109.47094 * 240.02464 * 13 12 10 17 17 C 1.46768 * 111.29731 * 0.40742 * 12 10 9 18 18 C 1.53003 * 109.47113 * 239.99872 * 2 1 3 19 19 C 1.53942 * 113.74267 * 156.67596 * 18 2 1 20 20 N 1.47579 * 86.11692 * 222.04765 * 19 18 2 21 21 C 1.36944 * 134.49417 * 204.64454 * 20 19 18 22 22 H 1.07991 * 120.00077 * 179.97438 * 21 20 19 23 23 C 1.38819 * 119.99521 * 359.97438 * 21 20 19 24 24 N 1.31612 * 120.00318 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99596 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46994 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47224 * 120.00006 * 25 23 21 28 28 H 1.48501 * 109.47033 * 240.00241 * 25 23 21 29 29 C 1.47579 * 91.01599 * 24.64067 * 20 19 18 30 30 H 1.09001 * 109.46965 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46622 * 300.00178 * 1 2 3 32 32 H 1.08997 * 109.46549 * 59.99986 * 1 2 3 33 33 H 0.97000 * 119.99768 * 94.99851 * 4 2 1 34 34 H 1.09002 * 110.48704 * 334.64635 * 9 7 5 35 35 H 1.08996 * 110.59997 * 212.05818 * 9 7 5 36 36 H 1.09006 * 109.46997 * 59.99867 * 14 13 12 37 37 H 1.08993 * 109.46968 * 179.97438 * 14 13 12 38 38 H 1.08996 * 109.47292 * 300.00123 * 14 13 12 39 39 H 1.08998 * 109.47498 * 59.99748 * 15 13 12 40 40 H 1.09002 * 109.47150 * 180.02562 * 15 13 12 41 41 H 1.09006 * 109.46961 * 300.00125 * 15 13 12 42 42 H 1.09001 * 109.46589 * 59.99992 * 16 13 12 43 43 H 1.08993 * 109.46816 * 180.02562 * 16 13 12 44 44 H 1.08998 * 109.46847 * 299.99907 * 16 13 12 45 45 H 1.09003 * 110.24577 * 101.98147 * 17 12 10 46 46 H 1.08999 * 110.24371 * 223.98527 * 17 12 10 47 47 H 1.09004 * 112.94189 * 288.41108 * 18 2 1 48 48 H 1.08996 * 113.77320 * 336.34940 * 19 18 2 49 49 H 1.09005 * 113.76535 * 107.74540 * 19 18 2 50 50 H 0.97004 * 120.00435 * 180.02562 * 24 23 21 51 51 H 1.08997 * 113.76976 * 221.05975 * 29 20 19 52 52 H 1.08998 * 113.86830 * 89.67245 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8591 1.1585 2.4114 7 6 2.6489 -0.7288 3.5878 8 1 1.9694 -1.5305 3.8772 9 6 4.0811 -1.2692 3.3694 10 6 4.9768 -0.1707 3.8982 11 8 6.1627 -0.0689 3.6655 12 7 4.2671 0.6760 4.6639 13 6 4.8265 1.8546 5.3303 14 6 6.3201 1.9579 5.0149 15 6 4.1114 3.1111 4.8295 16 6 4.6323 1.7258 6.8425 17 6 2.8610 0.2644 4.7517 18 6 2.0400 -0.7213 -1.2493 19 6 3.4666 -0.3147 -1.6608 20 7 2.9584 -0.3121 -3.0463 21 6 3.5328 -0.4680 -4.2796 22 1 2.9223 -0.4229 -5.1692 23 6 4.9000 -0.6839 -4.3861 24 7 5.6439 -0.7393 -3.3018 25 14 5.6837 -0.8959 -6.0684 26 1 4.6382 -0.7929 -7.1180 27 1 6.7018 0.1647 -6.2774 28 1 6.3339 -2.2287 -6.1472 29 6 1.5823 -0.0740 -2.5689 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 2.2491 -1.6318 1.1526 34 1 4.2682 -1.4364 2.3086 35 1 4.2336 -2.1899 3.9324 36 1 6.4584 2.0497 3.9376 37 1 6.7362 2.8351 5.5103 38 1 6.8296 1.0628 5.3716 39 1 3.0473 3.0375 5.0542 40 1 4.5279 3.9881 5.3250 41 1 4.2497 3.2028 3.7522 42 1 5.1418 0.8306 7.1992 43 1 5.0481 2.6029 7.3382 44 1 3.5682 1.6522 7.0671 45 1 2.6706 -0.2267 5.7060 46 1 2.2071 1.1285 4.6342 47 1 1.8828 -1.7993 -1.2115 48 1 3.7641 0.6699 -1.3001 49 1 4.2152 -1.0834 -1.4688 50 1 6.5993 -0.8898 -3.3763 51 1 0.8265 -0.6506 -3.1021 52 1 1.3245 0.9808 -2.4746 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969787876.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:49 Heat of formation + Delta-G solvation = -17.094980 kcal Electronic energy + Delta-G solvation = -30904.205008 eV Core-core repulsion = 26905.531596 eV Total energy + Delta-G solvation = -3998.673412 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.20393 -39.54107 -38.10239 -36.76923 -35.67614 -34.82332 -32.25348 -31.17490 -29.81116 -28.06241 -27.51605 -27.50805 -27.18063 -25.01796 -24.20820 -23.31668 -21.63837 -21.11147 -20.20762 -19.01712 -18.70632 -17.51928 -16.78154 -16.66192 -16.12636 -15.74125 -15.35037 -14.89890 -14.76356 -14.35907 -14.19542 -13.94278 -13.84072 -13.76532 -13.53531 -13.37603 -13.24226 -12.79634 -12.46899 -12.37067 -12.21237 -12.13984 -12.05643 -11.85844 -11.73020 -11.69239 -11.63324 -11.31768 -11.29439 -11.26209 -11.11569 -10.90329 -10.71733 -10.35780 -9.96994 -9.75568 -9.69007 -9.43743 -9.39324 -8.84594 -8.78461 -8.74925 -6.85777 -5.74263 -3.07095 2.56868 2.62260 2.83605 3.18886 3.40419 3.45350 3.48381 4.09078 4.16611 4.46539 4.52264 4.64363 4.74201 4.74905 4.88916 5.03978 5.12439 5.21953 5.27244 5.28106 5.32745 5.38588 5.45356 5.52418 5.54293 5.56285 5.61713 5.64034 5.65899 5.69697 5.78507 5.80344 5.92538 5.92622 6.01074 6.20229 6.22200 6.26607 6.34058 6.38812 6.57403 6.59946 6.65108 6.78631 7.09371 7.25311 7.37167 7.57858 7.60144 8.00409 8.17866 8.27603 9.06875 9.73068 10.61976 11.42529 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013288 B = 0.002998 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.720661 B = 9336.077307 C =10606.381892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.150 3.850 3 H 0.087 0.913 4 N -0.714 5.714 5 C 0.520 3.480 6 O -0.536 6.536 7 C -0.126 4.126 8 H 0.124 0.876 9 C -0.150 4.150 10 C 0.518 3.482 11 O -0.522 6.522 12 N -0.606 5.606 13 C 0.175 3.825 14 C -0.142 4.142 15 C -0.156 4.156 16 C -0.155 4.155 17 C 0.116 3.884 18 C -0.147 4.147 19 C 0.171 3.829 20 N -0.612 5.612 21 C -0.224 4.224 22 H 0.080 0.920 23 C -0.008 4.008 24 N -0.919 5.919 25 Si 0.911 3.089 26 H -0.280 1.280 27 H -0.290 1.290 28 H -0.290 1.290 29 C 0.130 3.870 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.400 0.600 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.076 0.924 46 H 0.097 0.903 47 H 0.088 0.912 48 H 0.025 0.975 49 H 0.071 0.929 50 H 0.253 0.747 51 H 0.044 0.956 52 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.816 -0.184 22.198 23.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.046 3.954 3 H 0.105 0.895 4 N -0.364 5.364 5 C 0.305 3.695 6 O -0.412 6.412 7 C -0.148 4.148 8 H 0.142 0.858 9 C -0.190 4.190 10 C 0.306 3.694 11 O -0.398 6.398 12 N -0.341 5.341 13 C 0.092 3.908 14 C -0.199 4.199 15 C -0.214 4.214 16 C -0.213 4.213 17 C -0.007 4.007 18 C -0.167 4.167 19 C 0.045 3.955 20 N -0.338 5.338 21 C -0.352 4.352 22 H 0.098 0.902 23 C -0.204 4.204 24 N -0.566 5.566 25 Si 0.741 3.259 26 H -0.205 1.205 27 H -0.217 1.217 28 H -0.217 1.217 29 C 0.003 3.997 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.234 0.766 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.116 0.884 47 H 0.106 0.894 48 H 0.042 0.958 49 H 0.090 0.910 50 H 0.063 0.937 51 H 0.062 0.938 52 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -8.091 0.748 21.885 23.345 hybrid contribution 0.481 -0.506 -0.966 1.192 sum -7.610 0.242 20.919 22.262 Atomic orbital electron populations 1.22121 0.95623 1.01718 1.02075 1.21113 0.93451 0.97570 0.83282 0.89540 1.46063 1.66607 1.14104 1.09618 1.20132 0.77694 0.87231 0.84436 1.90691 1.50171 1.15603 1.84768 1.22324 0.98134 0.99571 0.94766 0.85845 1.22434 0.92367 0.98972 1.05273 1.20720 0.87558 0.83111 0.78027 1.90758 1.14571 1.74843 1.59591 1.48331 1.09803 1.26249 1.49746 1.20447 0.94580 0.84173 0.91633 1.22104 0.92550 1.01840 1.03398 1.22157 1.00625 0.96219 1.02387 1.22178 1.02079 1.02471 0.94585 1.21919 0.83315 0.98904 0.96571 1.23830 1.00989 0.99646 0.92206 1.22254 0.91654 0.98264 0.83281 1.45957 1.02435 1.83255 1.02173 1.19058 0.91088 1.42152 0.82899 0.90245 1.24794 0.95978 1.02386 0.97292 1.69820 1.05160 1.55472 1.26146 0.86067 0.79238 0.77393 0.83184 1.20488 1.21740 1.21697 1.22486 0.89748 0.96698 0.90723 0.92720 0.92835 0.91428 0.76586 0.87114 0.86827 0.91057 0.92526 0.91363 0.92078 0.91631 0.91759 0.92272 0.91350 0.92283 0.90620 0.88445 0.89379 0.95771 0.91024 0.93652 0.93794 0.94855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.29 37.16 0.35 -1.61 16 2 C 0.15 2.21 2.42 -67.92 -0.16 2.04 16 3 H 0.09 1.52 7.37 -51.93 -0.38 1.14 16 4 N -0.71 -8.71 4.80 -53.80 -0.26 -8.96 16 5 C 0.52 6.47 7.12 -10.98 -0.08 6.39 16 6 O -0.54 -8.55 15.17 5.56 0.08 -8.47 16 7 C -0.13 -1.07 3.54 -90.14 -0.32 -1.39 16 8 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 9 C -0.15 -1.46 6.39 -26.75 -0.17 -1.63 16 10 C 0.52 7.01 7.84 -10.86 -0.09 6.92 16 11 O -0.52 -9.06 13.99 5.56 0.08 -8.98 16 12 N -0.61 -6.82 2.76 -157.57 -0.43 -7.26 16 13 C 0.17 1.85 1.20 -131.82 -0.16 1.69 16 14 C -0.14 -1.71 7.00 37.16 0.26 -1.45 16 15 C -0.16 -1.63 8.50 37.16 0.32 -1.31 16 16 C -0.15 -1.21 8.53 37.16 0.32 -0.89 16 17 C 0.12 1.02 5.97 -3.12 -0.02 1.00 16 18 C -0.15 -2.56 3.50 -89.69 -0.31 -2.87 16 19 C 0.17 4.00 7.07 -2.98 -0.02 3.98 16 20 N -0.61 -15.77 3.70 -177.93 -0.66 -16.42 16 21 C -0.22 -6.37 10.70 -15.05 -0.16 -6.53 16 22 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 23 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 24 N -0.92 -27.75 11.38 55.49 0.63 -27.12 16 25 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 C 0.13 2.59 7.56 -2.98 -0.02 2.57 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.84 7.43 -51.93 -0.39 0.45 16 33 H 0.40 3.98 8.42 -40.82 -0.34 3.63 16 34 H 0.11 1.22 7.51 -51.93 -0.39 0.83 16 35 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.07 7.08 -51.93 -0.37 0.70 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.89 7.06 -51.93 -0.37 0.53 16 39 H 0.06 0.61 7.22 -51.93 -0.38 0.23 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.40 7.89 -51.93 -0.41 -0.01 16 45 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.10 0.97 5.94 -51.93 -0.31 0.66 16 47 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 48 H 0.02 0.61 7.96 -51.93 -0.41 0.20 16 49 H 0.07 1.86 7.16 -51.93 -0.37 1.48 16 50 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 51 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 52 H 0.03 0.65 8.06 -51.93 -0.42 0.24 16 LS Contribution 407.74 15.07 6.14 6.14 Total: -1.00 -35.75 407.74 -8.96 -44.71 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -9.15 Total: 2.34 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -0.37 Total: 6.57 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: -0.72 Total: -59.76 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: 0.16 Total: -17.45 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.75 -8.96 -44.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969787876.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.617 kcal (2) G-P(sol) polarization free energy of solvation -35.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds