Wall clock time and date at job start Tue Mar 31 2020 21:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47351 * 2 1 4 4 N 1.46501 * 109.46919 * 239.99613 * 2 1 3 5 5 C 1.34781 * 119.99965 * 85.00489 * 4 2 1 6 6 O 1.21284 * 119.99804 * 359.97438 * 5 4 2 7 7 C 1.50693 * 119.99893 * 179.97438 * 5 4 2 8 8 H 1.09004 * 110.85747 * 59.30112 * 7 5 4 9 9 C 1.54628 * 110.97350 * 295.51107 * 7 5 4 10 10 C 1.51276 * 104.19159 * 266.67840 * 9 7 5 11 11 O 1.21289 * 124.94045 * 163.71401 * 10 9 7 12 12 N 1.34416 * 110.12090 * 343.74420 * 10 9 7 13 13 C 1.46506 * 124.35212 * 179.58577 * 12 10 9 14 14 C 1.52998 * 109.46954 * 0.02805 * 13 12 10 15 15 C 1.52997 * 109.46931 * 120.02628 * 13 12 10 16 16 C 1.53001 * 109.46958 * 240.02605 * 13 12 10 17 17 C 1.46865 * 111.30861 * 359.58793 * 12 10 9 18 18 C 1.52998 * 109.46941 * 119.99799 * 2 1 3 19 19 C 1.53947 * 113.74191 * 281.82520 * 18 2 1 20 20 N 1.47576 * 86.11706 * 222.04776 * 19 18 2 21 21 C 1.36941 * 134.49323 * 204.64425 * 20 19 18 22 22 H 1.07998 * 120.00127 * 180.02562 * 21 20 19 23 23 C 1.38821 * 119.99852 * 359.97438 * 21 20 19 24 24 N 1.31619 * 119.99862 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 119.99894 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47419 * 359.97438 * 25 23 21 27 27 H 1.48506 * 109.47250 * 120.00132 * 25 23 21 28 28 H 1.48501 * 109.46874 * 239.99903 * 25 23 21 29 29 C 1.47573 * 91.01555 * 24.63927 * 20 19 18 30 30 H 1.09000 * 109.46911 * 295.44497 * 1 2 3 31 31 H 1.09006 * 109.46763 * 55.43715 * 1 2 3 32 32 H 1.08993 * 109.47155 * 175.44034 * 1 2 3 33 33 H 0.97000 * 120.00143 * 264.99642 * 4 2 1 34 34 H 1.08997 * 110.48247 * 25.35398 * 9 7 5 35 35 H 1.09001 * 110.48764 * 147.86771 * 9 7 5 36 36 H 1.09000 * 109.47122 * 59.99912 * 14 13 12 37 37 H 1.09004 * 109.46845 * 179.97438 * 14 13 12 38 38 H 1.08994 * 109.47163 * 299.99666 * 14 13 12 39 39 H 1.09004 * 109.46928 * 59.99943 * 15 13 12 40 40 H 1.09004 * 109.46991 * 179.97438 * 15 13 12 41 41 H 1.09000 * 109.47290 * 300.00177 * 15 13 12 42 42 H 1.09000 * 109.46923 * 60.00482 * 16 13 12 43 43 H 1.09004 * 109.47007 * 180.02562 * 16 13 12 44 44 H 1.08997 * 109.47382 * 299.99611 * 16 13 12 45 45 H 1.08996 * 110.26080 * 258.03694 * 17 12 10 46 46 H 1.09002 * 110.27963 * 136.00573 * 17 12 10 47 47 H 1.09000 * 112.94613 * 53.56206 * 18 2 1 48 48 H 1.09000 * 113.77168 * 336.35202 * 19 18 2 49 49 H 1.09007 * 113.76576 * 107.74489 * 19 18 2 50 50 H 0.97000 * 119.99731 * 180.02562 * 24 23 21 51 51 H 1.09000 * 113.77301 * 221.05334 * 29 20 19 52 52 H 1.09004 * 113.77013 * 89.66230 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3572 6 8 1.8583 1.1583 -2.4118 7 6 2.6499 -0.7287 -3.5874 8 1 1.9997 -1.5645 -3.8460 9 6 4.1095 -1.2019 -3.3956 10 6 4.9426 -0.0752 -3.9655 11 8 6.1280 0.0831 -3.7635 12 7 4.1780 0.7255 -4.7278 13 6 4.6673 1.9183 -5.4236 14 6 6.1610 2.0951 -5.1437 15 6 4.4460 1.7573 -6.9289 16 6 3.9058 3.1480 -4.9247 17 6 2.7888 0.2511 -4.7736 18 6 2.0400 -0.7212 1.2493 19 6 1.9743 0.1330 2.5283 20 7 3.3072 -0.4165 2.8434 21 6 4.0158 -0.6125 3.9988 22 1 5.0042 -1.0461 3.9591 23 6 3.4641 -0.2530 5.2208 24 7 2.2598 0.2758 5.2691 25 14 4.4310 -0.5198 6.7967 26 1 5.7478 -1.1252 6.4731 27 1 4.6387 0.7839 7.4768 28 1 3.6748 -1.4307 7.6931 29 6 3.5698 -0.6699 1.4135 30 1 -0.3633 0.4415 0.9280 31 1 -0.3633 0.5830 -0.8463 32 1 -0.3633 -1.0243 -0.0817 33 1 2.2491 -1.6318 -1.1525 34 1 4.3293 -1.3413 -2.3371 35 1 4.2864 -2.1260 -3.9460 36 1 6.7035 1.2190 -5.4991 37 1 6.5252 2.9823 -5.6618 38 1 6.3187 2.2097 -4.0713 39 1 3.3818 1.6313 -7.1282 40 1 4.8097 2.6450 -7.4465 41 1 4.9885 0.8812 -7.2842 42 1 4.0635 3.2626 -3.8523 43 1 4.2696 4.0354 -5.4427 44 1 2.8417 3.0220 -5.1242 45 1 2.5972 -0.2655 -5.7141 46 1 2.0999 1.0873 -4.6547 47 1 1.6195 -1.7202 1.3646 48 1 1.9749 1.2067 2.3401 49 1 1.1952 -0.1776 3.2245 50 1 1.8745 0.5274 6.1230 51 1 4.0647 -1.6215 1.2196 52 1 4.0392 0.1678 0.8978 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969787877.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:53 Heat of formation + Delta-G solvation = -17.981520 kcal Electronic energy + Delta-G solvation = -30778.853576 eV Core-core repulsion = 26780.141721 eV Total energy + Delta-G solvation = -3998.711855 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.27602 -39.58968 -38.09838 -36.85152 -35.74032 -34.83822 -32.22956 -31.25408 -29.89213 -28.14582 -27.56659 -27.48374 -27.25320 -24.96997 -24.28057 -23.34887 -21.71137 -21.09635 -20.22235 -19.08808 -18.79257 -17.60275 -16.85206 -16.71228 -16.09217 -15.77794 -15.40404 -14.88434 -14.76445 -14.41264 -14.26357 -14.01945 -13.97089 -13.81815 -13.58716 -13.43232 -13.29921 -12.89593 -12.46255 -12.34225 -12.25176 -12.17435 -12.08882 -11.90942 -11.80054 -11.72904 -11.61909 -11.40775 -11.33029 -11.22055 -11.18223 -10.89106 -10.67538 -10.34307 -10.07678 -9.81775 -9.64851 -9.53239 -9.41586 -8.90083 -8.82763 -8.78946 -6.86912 -5.76445 -3.08390 2.46596 2.57289 2.75881 3.13973 3.39502 3.45054 3.47472 4.01892 4.08560 4.45265 4.46236 4.57776 4.67629 4.68625 4.82590 4.98941 5.12499 5.15147 5.16478 5.25854 5.32866 5.38929 5.39090 5.45219 5.47493 5.53752 5.55605 5.58378 5.63484 5.63739 5.73620 5.79222 5.86511 5.97686 6.05167 6.14178 6.17882 6.25645 6.34833 6.42954 6.51348 6.56637 6.62626 6.78208 7.00973 7.22509 7.36048 7.54964 7.57623 7.99141 8.07880 8.23531 9.05791 9.71610 10.60582 11.40881 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016501 B = 0.002641 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.413686 B =10597.722930 C =11359.661196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.151 3.849 3 H 0.086 0.914 4 N -0.715 5.715 5 C 0.519 3.481 6 O -0.534 6.534 7 C -0.127 4.127 8 H 0.123 0.877 9 C -0.148 4.148 10 C 0.519 3.481 11 O -0.525 6.525 12 N -0.605 5.605 13 C 0.175 3.825 14 C -0.141 4.141 15 C -0.155 4.155 16 C -0.156 4.156 17 C 0.116 3.884 18 C -0.147 4.147 19 C 0.176 3.824 20 N -0.612 5.612 21 C -0.222 4.222 22 H 0.080 0.920 23 C -0.009 4.009 24 N -0.921 5.921 25 Si 0.911 3.089 26 H -0.279 1.279 27 H -0.290 1.290 28 H -0.290 1.290 29 C 0.125 3.875 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.399 0.601 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.076 0.924 46 H 0.098 0.902 47 H 0.089 0.911 48 H 0.027 0.973 49 H 0.075 0.925 50 H 0.253 0.747 51 H 0.041 0.959 52 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.595 -2.168 -26.015 26.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.046 3.954 3 H 0.105 0.895 4 N -0.365 5.365 5 C 0.303 3.697 6 O -0.410 6.410 7 C -0.148 4.148 8 H 0.141 0.859 9 C -0.189 4.189 10 C 0.306 3.694 11 O -0.402 6.402 12 N -0.339 5.339 13 C 0.091 3.909 14 C -0.198 4.198 15 C -0.213 4.213 16 C -0.214 4.214 17 C -0.007 4.007 18 C -0.167 4.167 19 C 0.050 3.950 20 N -0.338 5.338 21 C -0.349 4.349 22 H 0.098 0.902 23 C -0.205 4.205 24 N -0.569 5.569 25 Si 0.742 3.258 26 H -0.205 1.205 27 H -0.217 1.217 28 H -0.217 1.217 29 C -0.001 4.001 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.233 0.767 34 H 0.127 0.873 35 H 0.132 0.868 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.095 0.905 46 H 0.116 0.884 47 H 0.107 0.893 48 H 0.045 0.955 49 H 0.093 0.907 50 H 0.063 0.937 51 H 0.059 0.941 52 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.080 -1.142 -25.609 25.719 hybrid contribution 0.474 -0.517 0.960 1.189 sum -1.606 -1.659 -24.649 24.757 Atomic orbital electron populations 1.22102 0.95373 1.01643 1.02417 1.21130 0.93789 0.97446 0.83020 0.89545 1.46103 1.66630 1.14051 1.09714 1.20138 0.77834 0.87277 0.84415 1.90705 1.50021 1.15624 1.84700 1.22336 0.97892 0.99923 0.94699 0.85866 1.22411 0.92582 0.99015 1.04886 1.20715 0.87070 0.83412 0.78201 1.90748 1.14476 1.74109 1.60836 1.48351 1.10008 1.26391 1.49182 1.20458 0.95215 0.83860 0.91329 1.22099 0.92656 1.01757 1.03320 1.22179 1.02084 1.02478 0.94588 1.22155 1.00453 0.96421 1.02345 1.21947 0.84009 0.98300 0.96466 1.23860 0.97581 1.00741 0.94537 1.22186 0.89708 0.93831 0.89293 1.45947 1.16310 1.71857 0.99655 1.19081 0.98392 1.34705 0.82767 0.90242 1.24784 0.97081 1.01159 0.97509 1.69818 1.15273 1.47505 1.24291 0.86052 0.78963 0.77356 0.83441 1.20466 1.21739 1.21700 1.22538 0.93031 0.97674 0.86871 0.91053 0.92841 0.92767 0.76712 0.87320 0.86808 0.91376 0.92492 0.91157 0.92245 0.91313 0.92273 0.91759 0.91610 0.92038 0.90539 0.88419 0.89292 0.95536 0.90692 0.93696 0.94122 0.95097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.46 37.16 0.35 -1.71 16 2 C 0.15 2.20 2.29 -67.93 -0.16 2.04 16 3 H 0.09 1.51 7.48 -51.93 -0.39 1.12 16 4 N -0.72 -8.20 4.76 -53.80 -0.26 -8.45 16 5 C 0.52 6.09 7.09 -10.99 -0.08 6.01 16 6 O -0.53 -8.28 15.18 5.55 0.08 -8.20 16 7 C -0.13 -0.97 3.54 -90.14 -0.32 -1.29 16 8 H 0.12 0.53 8.14 -51.93 -0.42 0.10 16 9 C -0.15 -1.27 6.40 -26.74 -0.17 -1.44 16 10 C 0.52 6.38 7.84 -10.86 -0.09 6.29 16 11 O -0.53 -8.35 13.99 5.55 0.08 -8.27 16 12 N -0.60 -6.26 2.76 -157.50 -0.43 -6.70 16 13 C 0.17 1.70 1.20 -131.82 -0.16 1.55 16 14 C -0.14 -1.56 7.00 37.16 0.26 -1.30 16 15 C -0.16 -1.11 8.54 37.16 0.32 -0.80 16 16 C -0.16 -1.52 8.49 37.16 0.32 -1.21 16 17 C 0.12 0.93 5.96 -3.07 -0.02 0.92 16 18 C -0.15 -2.56 3.36 -89.70 -0.30 -2.86 16 19 C 0.18 4.05 6.90 -2.98 -0.02 4.03 16 20 N -0.61 -15.76 3.70 -177.92 -0.66 -16.42 16 21 C -0.22 -6.31 10.70 -15.05 -0.16 -6.47 16 22 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 24 N -0.92 -27.42 11.38 55.49 0.63 -26.79 16 25 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 C 0.12 2.52 8.37 -2.98 -0.02 2.50 16 30 H 0.07 0.99 7.99 -51.93 -0.42 0.57 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.40 3.58 8.60 -40.82 -0.35 3.23 16 34 H 0.11 1.02 7.75 -51.93 -0.40 0.62 16 35 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.83 7.06 -51.93 -0.37 0.46 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.97 7.08 -51.93 -0.37 0.60 16 39 H 0.06 0.37 7.90 -51.93 -0.41 -0.04 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.58 7.21 -51.93 -0.37 0.20 16 45 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.10 0.92 5.96 -51.93 -0.31 0.61 16 47 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 48 H 0.03 0.64 8.03 -51.93 -0.42 0.22 16 49 H 0.07 1.90 7.16 -51.92 -0.37 1.53 16 50 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 51 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 52 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 409.45 15.07 6.17 6.17 Total: -1.00 -35.31 409.45 -8.97 -44.27 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -9.21 Total: 1.13 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -0.34 Total: 5.90 kcal Atomic # 7 Polarization: -57.64 SS G_CDS: -0.72 Total: -58.36 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: 0.16 Total: -16.47 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.31 -8.97 -44.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969787877.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.293 kcal (2) G-P(sol) polarization free energy of solvation -35.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds