Wall clock time and date at job start Tue Mar 31 2020 21:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47351 * 2 1 4 4 N 1.46501 * 109.46919 * 239.99613 * 2 1 3 5 5 C 1.34781 * 119.99965 * 85.00489 * 4 2 1 6 6 O 1.21284 * 119.99804 * 359.97438 * 5 4 2 7 7 C 1.50693 * 119.99893 * 179.97438 * 5 4 2 8 8 H 1.09004 * 110.85747 * 59.30112 * 7 5 4 9 9 C 1.54628 * 110.97350 * 295.51107 * 7 5 4 10 10 C 1.51276 * 104.19159 * 266.67840 * 9 7 5 11 11 O 1.21289 * 124.94045 * 163.71401 * 10 9 7 12 12 N 1.34416 * 110.12090 * 343.74420 * 10 9 7 13 13 C 1.46506 * 124.35212 * 179.58577 * 12 10 9 14 14 C 1.52998 * 109.46954 * 0.02805 * 13 12 10 15 15 C 1.52997 * 109.46931 * 120.02628 * 13 12 10 16 16 C 1.53001 * 109.46958 * 240.02605 * 13 12 10 17 17 C 1.46865 * 111.30861 * 359.58793 * 12 10 9 18 18 C 1.52998 * 109.46941 * 119.99799 * 2 1 3 19 19 C 1.53947 * 113.74191 * 281.82520 * 18 2 1 20 20 N 1.47576 * 86.11706 * 222.04776 * 19 18 2 21 21 C 1.36941 * 134.49323 * 204.64425 * 20 19 18 22 22 H 1.07998 * 120.00127 * 180.02562 * 21 20 19 23 23 C 1.38821 * 119.99852 * 359.97438 * 21 20 19 24 24 N 1.31619 * 119.99862 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 119.99894 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47419 * 359.97438 * 25 23 21 27 27 H 1.48506 * 109.47250 * 120.00132 * 25 23 21 28 28 H 1.48501 * 109.46874 * 239.99903 * 25 23 21 29 29 C 1.47573 * 91.01555 * 24.63927 * 20 19 18 30 30 H 1.09000 * 109.46911 * 295.44497 * 1 2 3 31 31 H 1.09006 * 109.46763 * 55.43715 * 1 2 3 32 32 H 1.08993 * 109.47155 * 175.44034 * 1 2 3 33 33 H 0.97000 * 120.00143 * 264.99642 * 4 2 1 34 34 H 1.08997 * 110.48247 * 25.35398 * 9 7 5 35 35 H 1.09001 * 110.48764 * 147.86771 * 9 7 5 36 36 H 1.09000 * 109.47122 * 59.99912 * 14 13 12 37 37 H 1.09004 * 109.46845 * 179.97438 * 14 13 12 38 38 H 1.08994 * 109.47163 * 299.99666 * 14 13 12 39 39 H 1.09004 * 109.46928 * 59.99943 * 15 13 12 40 40 H 1.09004 * 109.46991 * 179.97438 * 15 13 12 41 41 H 1.09000 * 109.47290 * 300.00177 * 15 13 12 42 42 H 1.09000 * 109.46923 * 60.00482 * 16 13 12 43 43 H 1.09004 * 109.47007 * 180.02562 * 16 13 12 44 44 H 1.08997 * 109.47382 * 299.99611 * 16 13 12 45 45 H 1.08996 * 110.26080 * 258.03694 * 17 12 10 46 46 H 1.09002 * 110.27963 * 136.00573 * 17 12 10 47 47 H 1.09000 * 112.94613 * 53.56206 * 18 2 1 48 48 H 1.09000 * 113.77168 * 336.35202 * 19 18 2 49 49 H 1.09007 * 113.76576 * 107.74489 * 19 18 2 50 50 H 0.97000 * 119.99731 * 180.02562 * 24 23 21 51 51 H 1.09000 * 113.77301 * 221.05334 * 29 20 19 52 52 H 1.09004 * 113.77013 * 89.66230 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3572 6 8 1.8583 1.1583 -2.4118 7 6 2.6499 -0.7287 -3.5874 8 1 1.9997 -1.5645 -3.8460 9 6 4.1095 -1.2019 -3.3956 10 6 4.9426 -0.0752 -3.9655 11 8 6.1280 0.0831 -3.7635 12 7 4.1780 0.7255 -4.7278 13 6 4.6673 1.9183 -5.4236 14 6 6.1610 2.0951 -5.1437 15 6 4.4460 1.7573 -6.9289 16 6 3.9058 3.1480 -4.9247 17 6 2.7888 0.2511 -4.7736 18 6 2.0400 -0.7212 1.2493 19 6 1.9743 0.1330 2.5283 20 7 3.3072 -0.4165 2.8434 21 6 4.0158 -0.6125 3.9988 22 1 5.0042 -1.0461 3.9591 23 6 3.4641 -0.2530 5.2208 24 7 2.2598 0.2758 5.2691 25 14 4.4310 -0.5198 6.7967 26 1 5.7478 -1.1252 6.4731 27 1 4.6387 0.7839 7.4768 28 1 3.6748 -1.4307 7.6931 29 6 3.5698 -0.6699 1.4135 30 1 -0.3633 0.4415 0.9280 31 1 -0.3633 0.5830 -0.8463 32 1 -0.3633 -1.0243 -0.0817 33 1 2.2491 -1.6318 -1.1525 34 1 4.3293 -1.3413 -2.3371 35 1 4.2864 -2.1260 -3.9460 36 1 6.7035 1.2190 -5.4991 37 1 6.5252 2.9823 -5.6618 38 1 6.3187 2.2097 -4.0713 39 1 3.3818 1.6313 -7.1282 40 1 4.8097 2.6450 -7.4465 41 1 4.9885 0.8812 -7.2842 42 1 4.0635 3.2626 -3.8523 43 1 4.2696 4.0354 -5.4427 44 1 2.8417 3.0220 -5.1242 45 1 2.5972 -0.2655 -5.7141 46 1 2.0999 1.0873 -4.6547 47 1 1.6195 -1.7202 1.3646 48 1 1.9749 1.2067 2.3401 49 1 1.1952 -0.1776 3.2245 50 1 1.8745 0.5274 6.1230 51 1 4.0647 -1.6215 1.2196 52 1 4.0392 0.1678 0.8978 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969787877.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:52 Heat of formation + Delta-G solvation = -42.109525 kcal Electronic energy + Delta-G solvation = -30779.899845 eV Core-core repulsion = 26780.141721 eV Total energy + Delta-G solvation = -3999.758124 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.10567 -40.72875 -39.59680 -37.74903 -36.60099 -36.09887 -34.17085 -32.35661 -30.89144 -29.32954 -28.91060 -28.23216 -28.06357 -26.64060 -25.80878 -24.56905 -22.57573 -22.41138 -21.29405 -20.52198 -19.63273 -18.82852 -18.47163 -17.57187 -17.26557 -16.85144 -16.71860 -16.31161 -15.84063 -15.75521 -15.46592 -15.07354 -14.94140 -14.79629 -14.75957 -14.55443 -14.27419 -14.00777 -13.79279 -13.36071 -13.28640 -13.13327 -13.10169 -13.02090 -12.96914 -12.90858 -12.70609 -12.64407 -12.60527 -12.40746 -12.32255 -12.11527 -11.98408 -11.95192 -11.81874 -11.56927 -11.23620 -10.90123 -10.72979 -10.44594 -9.99587 -9.62348 -8.94726 -7.93272 -5.26938 1.43380 1.44765 1.54954 1.58913 1.66733 2.02426 2.20050 2.45145 3.27011 3.32911 3.36998 3.38648 3.61581 3.81120 3.86061 3.92467 3.97702 4.00297 4.09236 4.28060 4.40900 4.47805 4.57298 4.58601 4.61948 4.67224 4.69968 4.74739 4.78673 4.80316 4.84358 4.86382 4.89018 4.91560 4.93565 4.94406 4.96977 5.12787 5.17085 5.23080 5.27590 5.33254 5.36807 5.52008 5.57927 5.64838 5.73155 5.92345 6.22100 6.65270 6.90316 7.21482 7.33845 7.58127 8.53845 9.23766 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016501 B = 0.002641 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.413686 B =10597.722930 C =11359.661196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.163 3.837 3 H 0.052 0.948 4 N -0.706 5.706 5 C 0.513 3.487 6 O -0.576 6.576 7 C -0.110 4.110 8 H 0.176 0.824 9 C -0.140 4.140 10 C 0.498 3.502 11 O -0.576 6.576 12 N -0.606 5.606 13 C 0.166 3.834 14 C -0.133 4.133 15 C -0.145 4.145 16 C -0.149 4.149 17 C 0.111 3.889 18 C -0.106 4.106 19 C 0.170 3.830 20 N -0.644 5.644 21 C -0.237 4.237 22 H 0.081 0.919 23 C -0.068 4.068 24 N -0.953 5.953 25 Si 0.979 3.021 26 H -0.266 1.266 27 H -0.294 1.294 28 H -0.287 1.287 29 C 0.126 3.874 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.416 0.584 34 H 0.099 0.901 35 H 0.152 0.848 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.032 0.968 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.058 0.942 42 H 0.027 0.973 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.118 0.882 46 H 0.084 0.916 47 H 0.110 0.890 48 H 0.006 0.994 49 H 0.048 0.952 50 H 0.249 0.751 51 H 0.063 0.937 52 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.405 -4.495 -28.635 29.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.057 3.943 3 H 0.070 0.930 4 N -0.357 5.357 5 C 0.300 3.700 6 O -0.456 6.456 7 C -0.131 4.131 8 H 0.193 0.807 9 C -0.180 4.180 10 C 0.287 3.713 11 O -0.457 6.457 12 N -0.339 5.339 13 C 0.083 3.917 14 C -0.191 4.191 15 C -0.203 4.203 16 C -0.207 4.207 17 C -0.011 4.011 18 C -0.125 4.125 19 C 0.044 3.956 20 N -0.370 5.370 21 C -0.365 4.365 22 H 0.099 0.901 23 C -0.261 4.261 24 N -0.601 5.601 25 Si 0.807 3.193 26 H -0.191 1.191 27 H -0.222 1.222 28 H -0.214 1.214 29 C 0.002 3.998 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.253 0.747 34 H 0.118 0.882 35 H 0.170 0.830 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.051 0.949 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.046 0.954 43 H 0.102 0.898 44 H 0.086 0.914 45 H 0.135 0.865 46 H 0.103 0.897 47 H 0.128 0.872 48 H 0.024 0.976 49 H 0.066 0.934 50 H 0.058 0.942 51 H 0.081 0.919 52 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -2.907 -3.504 -28.280 28.645 hybrid contribution 0.755 0.299 1.741 1.921 sum -2.152 -3.205 -26.540 26.819 Atomic orbital electron populations 1.22015 0.93745 1.03120 1.01823 1.20685 0.94867 0.95485 0.83231 0.93000 1.45895 1.66439 1.14744 1.08644 1.20932 0.76804 0.86889 0.85358 1.90703 1.51756 1.17705 1.85415 1.22414 0.97962 1.00731 0.92028 0.80673 1.22446 0.91971 0.98995 1.04580 1.21497 0.86953 0.84625 0.78212 1.90720 1.16742 1.75619 1.62613 1.48557 1.10969 1.26006 1.48385 1.20598 0.93919 0.83829 0.93365 1.21985 0.94184 1.01986 1.00901 1.22093 1.03172 1.03132 0.91928 1.22099 1.00974 0.97497 1.00133 1.22213 0.82090 0.98332 0.98439 1.23441 0.95488 1.00498 0.93101 1.22098 0.88220 0.93508 0.91796 1.46403 1.17348 1.72085 1.01166 1.19467 0.98701 1.34167 0.84210 0.90074 1.25644 0.98179 1.01526 1.00701 1.70003 1.16749 1.48761 1.24633 0.85008 0.78120 0.76899 0.79286 1.19065 1.22161 1.21354 1.22662 0.95213 0.98135 0.83838 0.92358 0.92694 0.90268 0.74704 0.88242 0.83011 0.92649 0.90632 0.94870 0.90692 0.90047 0.92281 0.95354 0.89839 0.91416 0.86454 0.89744 0.87169 0.97637 0.93370 0.94181 0.91894 0.95970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.46 71.98 0.68 -3.03 16 2 C 0.16 4.65 2.29 44.99 0.10 4.76 16 3 H 0.05 1.88 7.48 -2.39 -0.02 1.86 16 4 N -0.71 -14.55 4.76 -442.52 -2.11 -16.65 16 5 C 0.51 11.01 7.09 87.65 0.62 11.63 16 6 O -0.58 -17.69 15.18 -3.04 -0.05 -17.73 16 7 C -0.11 -1.26 3.54 -10.48 -0.04 -1.30 16 8 H 0.18 0.31 8.14 -2.39 -0.02 0.29 16 9 C -0.14 -1.97 6.40 30.59 0.20 -1.77 16 10 C 0.50 11.94 7.84 87.90 0.69 12.63 16 11 O -0.58 -19.04 13.99 -3.06 -0.04 -19.09 16 12 N -0.61 -11.79 2.76 -770.79 -2.13 -13.91 16 13 C 0.17 3.12 1.20 3.60 0.00 3.13 16 14 C -0.13 -3.07 7.00 71.98 0.50 -2.56 16 15 C -0.15 -1.72 8.54 71.98 0.61 -1.10 16 16 C -0.15 -2.90 8.49 71.98 0.61 -2.29 16 17 C 0.11 1.43 5.96 86.81 0.52 1.95 16 18 C -0.11 -3.60 3.36 -10.14 -0.03 -3.63 16 19 C 0.17 8.11 6.90 86.48 0.60 8.70 16 20 N -0.64 -33.76 3.70 -716.81 -2.65 -36.41 16 21 C -0.24 -13.67 10.70 84.03 0.90 -12.77 16 22 H 0.08 4.51 7.83 -2.91 -0.02 4.48 16 23 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 24 N -0.95 -58.37 11.38 21.65 0.25 -58.12 16 25 Si 0.98 46.66 29.55 68.60 2.03 48.69 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 27 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 28 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 29 C 0.13 5.06 8.37 86.48 0.72 5.79 16 30 H 0.06 1.61 7.99 -2.39 -0.02 1.59 16 31 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.42 5.89 8.60 -92.71 -0.80 5.09 16 34 H 0.10 1.64 7.75 -2.39 -0.02 1.62 16 35 H 0.15 1.02 8.14 -2.39 -0.02 1.01 16 36 H 0.05 1.40 7.06 -2.39 -0.02 1.38 16 37 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.03 0.99 7.08 -2.39 -0.02 0.97 16 39 H 0.07 0.67 7.90 -2.39 -0.02 0.65 16 40 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 41 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 44 H 0.07 1.22 7.21 -2.39 -0.02 1.20 16 45 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.08 1.39 5.96 -2.39 -0.01 1.38 16 47 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 48 H 0.01 0.30 8.03 -2.39 -0.02 0.28 16 49 H 0.05 2.54 7.16 -2.38 -0.02 2.52 16 50 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 51 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 52 H 0.02 0.95 8.10 -2.38 -0.02 0.93 16 Total: -1.00 -83.38 409.45 2.56 -80.82 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.10 Total: 15.75 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 7.16 Total: 16.65 kcal Atomic # 7 Polarization: -118.46 SS G_CDS: -6.64 Total: -125.10 kcal Atomic # 8 Polarization: -36.73 SS G_CDS: -0.09 Total: -36.82 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -83.38 2.56 -80.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969787877.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.713 kcal (2) G-P(sol) polarization free energy of solvation -83.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds