Wall clock time and date at job start Tue Mar 31 2020 21:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 N 1.46497 * 109.47195 * 184.99778 * 4 2 1 6 6 C 1.46767 * 124.35336 * 269.72903 * 5 4 2 7 7 C 1.54661 * 105.38353 * 162.85416 * 6 5 4 8 8 H 1.09006 * 111.18992 * 267.59839 * 7 6 5 9 9 C 1.50694 * 110.85460 * 143.79293 * 7 6 5 10 10 O 1.21278 * 120.00129 * 6.32383 * 9 7 6 11 11 N 1.34784 * 119.99936 * 186.33037 * 9 7 6 12 12 C 1.46500 * 120.00003 * 179.97438 * 11 9 7 13 13 H 1.09008 * 109.46866 * 35.00093 * 12 11 9 14 14 C 1.53000 * 109.47058 * 275.00309 * 12 11 9 15 15 C 1.52998 * 109.47169 * 154.99980 * 12 11 9 16 16 C 1.53945 * 113.73874 * 278.74454 * 15 12 11 17 17 N 1.47812 * 86.03382 * 222.08170 * 16 15 12 18 18 C 1.36938 * 134.45881 * 204.64315 * 17 16 15 19 19 H 1.08002 * 120.00286 * 179.86518 * 18 17 16 20 20 C 1.38814 * 119.99723 * 359.87044 * 18 17 16 21 21 N 1.31619 * 120.00168 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99759 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47317 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.46792 * 120.00101 * 22 20 18 25 25 H 1.48497 * 109.47007 * 239.99541 * 22 20 18 26 26 C 1.47584 * 91.05098 * 24.55095 * 17 16 15 27 27 C 1.54632 * 101.68501 * 25.76473 * 7 6 5 28 28 C 1.34427 * 124.34865 * 90.02801 * 5 4 2 29 29 O 1.21281 * 124.93881 * 0.38705 * 28 5 4 30 30 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 31 31 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 33 33 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 34 34 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 35 35 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 36 36 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 37 37 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 38 38 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 39 39 H 1.08994 * 110.24475 * 281.98087 * 6 5 4 40 40 H 1.08999 * 110.24272 * 43.98282 * 6 5 4 41 41 H 0.97001 * 120.00028 * 359.97438 * 11 9 7 42 42 H 1.09002 * 109.46708 * 180.02562 * 14 12 11 43 43 H 1.08995 * 109.46868 * 299.99697 * 14 12 11 44 44 H 1.08996 * 109.47371 * 60.00366 * 14 12 11 45 45 H 1.08995 * 112.94172 * 50.33308 * 15 12 11 46 46 H 1.08993 * 113.77325 * 336.34395 * 16 15 12 47 47 H 1.09003 * 113.77099 * 107.74985 * 16 15 12 48 48 H 0.97004 * 119.99674 * 179.97438 * 21 20 18 49 49 H 1.09003 * 113.76619 * 221.15054 * 26 17 16 50 50 H 1.09001 * 113.87081 * 89.76582 * 26 17 16 51 51 H 1.08999 * 110.48490 * 216.31038 * 27 7 6 52 52 H 1.08995 * 110.48431 * 93.67067 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.4249 0.1745 -1.7357 7 6 5.7895 -0.1233 -1.0714 8 1 5.9215 0.4633 -0.1622 9 6 6.9207 0.1210 -2.0366 10 8 6.6954 0.6088 -3.1239 11 7 8.1828 -0.2026 -1.6916 12 6 9.2824 0.0344 -2.6301 13 1 9.0862 0.9444 -3.1973 14 6 9.3971 -1.1507 -3.5910 15 6 10.5913 0.1899 -1.8533 16 6 10.7982 1.5964 -1.2628 17 7 12.2014 1.4653 -1.7088 18 6 13.3887 2.0231 -1.3160 19 1 14.3054 1.7514 -1.8183 20 6 13.4141 2.9378 -0.2721 21 7 12.2969 3.2693 0.3398 22 14 15.0339 3.6982 0.2642 23 1 16.1345 3.1631 -0.5769 24 1 14.9637 5.1734 0.1086 25 1 15.2911 3.3623 1.6876 26 6 11.8094 0.4906 -2.7453 27 6 5.6566 -1.6288 -0.7441 28 6 4.1647 -1.8547 -0.6360 29 8 3.6441 -2.8225 -0.1230 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6768 1.9562 0.8901 35 1 3.1301 1.4425 0.0005 36 1 1.6768 1.9563 -0.8899 37 1 1.6053 -1.7198 -1.2953 38 1 1.7516 -0.1582 -2.1370 39 1 4.4985 0.0701 -2.8181 40 1 4.0907 1.1786 -1.4746 41 1 8.3630 -0.5925 -0.8218 42 1 10.2156 -0.9745 -4.2890 43 1 9.5933 -2.0605 -3.0238 44 1 8.4647 -1.2614 -4.1444 45 1 10.7592 -0.6154 -1.1382 46 1 10.2432 2.3772 -1.7827 47 1 10.6826 1.6397 -0.1798 48 1 12.3148 3.9082 1.0695 49 1 12.4995 -0.3474 -2.8438 50 1 11.5518 0.9441 -3.7025 51 1 6.1468 -1.8581 0.2020 52 1 6.0766 -2.2325 -1.5486 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969794882.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:07 Heat of formation + Delta-G solvation = -28.873634 kcal Electronic energy + Delta-G solvation = -29795.545682 eV Core-core repulsion = 25796.361509 eV Total energy + Delta-G solvation = -3999.184173 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.12278 -39.60733 -38.13575 -37.02447 -35.81918 -34.87448 -32.58078 -32.02617 -30.29291 -28.17665 -27.55948 -27.36526 -26.71526 -24.94190 -24.14268 -23.23870 -21.33221 -20.90712 -20.26035 -19.52957 -19.04743 -17.56673 -17.20099 -16.80220 -16.23694 -16.12340 -15.49643 -15.20113 -14.93311 -14.83307 -14.43362 -14.03129 -13.96204 -13.80683 -13.59647 -13.49656 -13.23332 -13.10292 -12.92400 -12.62849 -12.46102 -12.17669 -12.14308 -11.88066 -11.71634 -11.65211 -11.54807 -11.36542 -11.33154 -11.20157 -11.07052 -10.94300 -10.75586 -10.39234 -10.22370 -9.96989 -9.79705 -9.70186 -9.43846 -8.96330 -8.88781 -8.82770 -6.90119 -5.79560 -3.11530 2.31549 2.55451 2.64970 3.16824 3.36855 3.42378 3.44785 3.95556 4.06402 4.42581 4.45552 4.48388 4.53389 4.62908 4.69272 4.91480 5.03899 5.09152 5.14313 5.20303 5.23091 5.24513 5.25933 5.28954 5.40109 5.42290 5.50063 5.50843 5.55399 5.60948 5.64752 5.74869 5.75185 5.89920 5.90381 5.94342 5.98338 6.19243 6.25789 6.31332 6.36519 6.53786 6.61365 6.74241 6.81447 7.19882 7.32906 7.52856 7.54977 7.89861 7.95642 8.21094 9.02336 9.68532 10.57346 11.37633 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017543 B = 0.002190 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.671646 B =12783.559158 C =13614.616396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.151 4.151 4 C 0.130 3.870 5 N -0.616 5.616 6 C 0.114 3.886 7 C -0.125 4.125 8 H 0.120 0.880 9 C 0.526 3.474 10 O -0.539 6.539 11 N -0.712 5.712 12 C 0.150 3.850 13 H 0.088 0.912 14 C -0.159 4.159 15 C -0.147 4.147 16 C 0.171 3.829 17 N -0.613 5.613 18 C -0.222 4.222 19 H 0.080 0.920 20 C -0.009 4.009 21 N -0.922 5.922 22 Si 0.911 3.089 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.130 3.870 27 C -0.146 4.146 28 C 0.521 3.479 29 O -0.532 6.532 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.401 0.599 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.088 0.912 46 H 0.026 0.974 47 H 0.071 0.929 48 H 0.253 0.747 49 H 0.044 0.956 50 H 0.035 0.965 51 H 0.112 0.888 52 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.959 -8.467 -2.627 22.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.134 4.134 3 C -0.208 4.208 4 C 0.009 3.991 5 N -0.350 5.350 6 C -0.009 4.009 7 C -0.147 4.147 8 H 0.138 0.862 9 C 0.311 3.689 10 O -0.416 6.416 11 N -0.362 5.362 12 C 0.045 3.955 13 H 0.106 0.894 14 C -0.217 4.217 15 C -0.167 4.167 16 C 0.046 3.954 17 N -0.339 5.339 18 C -0.349 4.349 19 H 0.098 0.902 20 C -0.206 4.206 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.217 1.217 26 C 0.003 3.997 27 C -0.186 4.186 28 C 0.308 3.692 29 O -0.409 6.409 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.235 0.765 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.106 0.894 46 H 0.044 0.956 47 H 0.090 0.910 48 H 0.063 0.937 49 H 0.062 0.938 50 H 0.052 0.948 51 H 0.130 0.870 52 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -21.231 -8.404 -2.969 23.026 hybrid contribution 1.012 0.543 0.741 1.367 sum -20.219 -7.862 -2.228 21.808 Atomic orbital electron populations 1.21769 0.94421 1.01986 1.02097 1.21547 0.96099 0.96906 0.98889 1.21957 1.01495 0.95444 1.01948 1.21491 0.77916 1.01679 0.98052 1.48305 1.06324 1.22187 1.58178 1.22148 0.86359 0.92801 0.99619 1.22305 0.94352 0.97738 1.00341 0.86155 1.19962 0.83682 0.77939 0.87351 1.90710 1.83834 1.43962 1.23094 1.46075 1.06436 1.63605 1.20046 1.21131 0.85395 0.98775 0.90162 0.89368 1.22131 1.01938 0.98194 0.99425 1.23826 0.92290 1.01336 0.99238 1.22293 0.84256 0.89302 0.99593 1.46007 1.02967 1.49455 1.35484 1.19077 0.84262 1.18995 1.12602 0.90215 1.24784 0.97229 0.99657 0.98883 1.69823 1.24833 1.36798 1.25441 0.86055 0.82644 0.78898 0.78223 1.20457 1.21752 1.21709 1.22489 0.92291 0.92487 0.92397 1.22359 0.95057 0.95451 1.05755 1.20766 0.89529 0.81915 0.76973 1.90731 1.74339 1.30833 1.44956 0.92466 0.92477 0.92304 0.90765 0.92562 0.92163 0.92518 0.89955 0.90151 0.89047 0.89276 0.76454 0.91378 0.92677 0.92802 0.89359 0.95647 0.91044 0.93732 0.93762 0.94764 0.87008 0.87253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.19 37.16 0.34 -0.51 16 2 C -0.11 -0.83 3.13 -90.62 -0.28 -1.11 16 3 C -0.15 -1.02 8.58 37.16 0.32 -0.70 16 4 C 0.13 1.01 5.35 -4.04 -0.02 0.99 16 5 N -0.62 -5.56 2.70 -172.30 -0.47 -6.03 16 6 C 0.11 0.96 6.09 -3.02 -0.02 0.95 16 7 C -0.13 -1.06 3.56 -90.04 -0.32 -1.38 16 8 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 9 C 0.53 6.13 7.04 -10.98 -0.08 6.05 16 10 O -0.54 -8.16 15.23 5.56 0.08 -8.07 16 11 N -0.71 -8.17 5.03 -53.80 -0.27 -8.44 16 12 C 0.15 2.08 2.38 -67.93 -0.16 1.92 16 13 H 0.09 1.44 7.42 -51.92 -0.39 1.06 16 14 C -0.16 -1.92 9.31 37.16 0.35 -1.57 16 15 C -0.15 -2.45 3.47 -89.70 -0.31 -2.76 16 16 C 0.17 3.81 7.08 -2.84 -0.02 3.79 16 17 N -0.61 -15.32 3.70 -177.72 -0.66 -15.98 16 18 C -0.22 -6.15 10.70 -15.06 -0.16 -6.31 16 19 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 21 N -0.92 -26.92 11.39 55.49 0.63 -26.29 16 22 Si 0.91 21.94 29.55 -169.99 -5.02 16.91 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 C 0.13 2.51 7.64 -2.97 -0.02 2.48 16 27 C -0.15 -1.20 6.37 -26.74 -0.17 -1.37 16 28 C 0.52 5.68 8.02 -10.86 -0.09 5.59 16 29 O -0.53 -7.76 17.59 5.56 0.10 -7.66 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.43 5.68 -51.93 -0.29 0.14 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.70 7.92 -51.93 -0.41 0.29 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.89 7.07 -51.93 -0.37 0.52 16 40 H 0.09 0.67 5.92 -51.93 -0.31 0.36 16 41 H 0.40 3.78 8.60 -40.82 -0.35 3.43 16 42 H 0.07 0.81 7.52 -51.93 -0.39 0.42 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 46 H 0.03 0.60 7.99 -51.93 -0.41 0.19 16 47 H 0.07 1.76 7.17 -51.93 -0.37 1.39 16 48 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 49 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 50 H 0.03 0.65 8.10 -51.93 -0.42 0.23 16 51 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 52 H 0.11 0.89 7.89 -51.93 -0.41 0.48 16 LS Contribution 413.17 15.07 6.23 6.23 Total: -1.00 -34.22 413.17 -9.29 -43.51 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -9.17 Total: 0.12 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -0.74 Total: 5.70 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: -0.76 Total: -56.73 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: 0.18 Total: -15.73 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.22 -9.29 -43.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969794882.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.638 kcal (2) G-P(sol) polarization free energy of solvation -34.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds