Wall clock time and date at job start Tue Mar 31 2020 21:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47387 * 2 1 4 4 C 1.53004 * 109.46935 * 239.99891 * 2 1 3 5 5 N 1.46498 * 109.47177 * 185.00082 * 4 2 1 6 6 C 1.46768 * 124.35413 * 269.73158 * 5 4 2 7 7 C 1.54659 * 105.38635 * 162.85258 * 6 5 4 8 8 H 1.08994 * 111.19165 * 267.59228 * 7 6 5 9 9 C 1.50696 * 110.85439 * 143.78682 * 7 6 5 10 10 O 1.21281 * 119.99777 * 6.33524 * 9 7 6 11 11 N 1.34776 * 120.00189 * 186.32764 * 9 7 6 12 12 C 1.46500 * 120.00313 * 180.02562 * 11 9 7 13 13 H 1.09000 * 109.47010 * 325.00754 * 12 11 9 14 14 C 1.53000 * 109.46698 * 85.00134 * 12 11 9 15 15 C 1.52995 * 109.47190 * 205.00399 * 12 11 9 16 16 C 1.53950 * 113.73956 * 161.68091 * 15 12 11 17 17 N 1.47588 * 86.11407 * 222.04514 * 16 15 12 18 18 C 1.36931 * 134.49216 * 204.63871 * 17 16 15 19 19 H 1.08001 * 120.00285 * 180.02562 * 18 17 16 20 20 C 1.38820 * 120.00118 * 0.02562 * 18 17 16 21 21 N 1.31619 * 119.99820 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00063 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46836 * 60.00221 * 22 20 18 24 24 H 1.48498 * 109.46833 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47010 * 300.00237 * 22 20 18 26 26 C 1.47582 * 91.01312 * 24.64191 * 17 16 15 27 27 C 1.54635 * 101.68427 * 25.76608 * 7 6 5 28 28 C 1.34423 * 124.34976 * 90.02538 * 5 4 2 29 29 O 1.21278 * 124.94042 * 0.43187 * 28 5 4 30 30 H 1.09001 * 109.46667 * 59.99507 * 1 2 3 31 31 H 1.08997 * 109.47403 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46636 * 299.99835 * 1 2 3 33 33 H 1.09002 * 109.47181 * 120.00404 * 2 1 3 34 34 H 1.09004 * 109.47432 * 179.97438 * 3 2 1 35 35 H 1.08991 * 109.47556 * 299.99952 * 3 2 1 36 36 H 1.08997 * 109.47098 * 60.00447 * 3 2 1 37 37 H 1.08997 * 109.47758 * 305.00457 * 4 2 1 38 38 H 1.09005 * 109.46711 * 65.00517 * 4 2 1 39 39 H 1.09000 * 110.24028 * 281.98581 * 6 5 4 40 40 H 1.09002 * 110.24130 * 43.97933 * 6 5 4 41 41 H 0.96998 * 119.99579 * 0.02562 * 11 9 7 42 42 H 1.09014 * 109.46591 * 180.02562 * 14 12 11 43 43 H 1.09000 * 109.47292 * 300.02413 * 14 12 11 44 44 H 1.08995 * 109.47164 * 60.03766 * 14 12 11 45 45 H 1.09000 * 112.94491 * 293.40895 * 15 12 11 46 46 H 1.08995 * 113.76608 * 336.34345 * 16 15 12 47 47 H 1.08999 * 113.76967 * 107.75070 * 16 15 12 48 48 H 0.96998 * 119.99798 * 180.02562 * 21 20 18 49 49 H 1.09005 * 113.76329 * 221.05797 * 26 17 16 50 50 H 1.08995 * 113.76971 * 89.66194 * 26 17 16 51 51 H 1.08997 * 110.48637 * 216.31466 * 27 7 6 52 52 H 1.08994 * 110.48741 * 93.66374 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8265 -1.1906 6 6 4.4250 0.1743 -1.7355 7 6 5.7895 -0.1234 -1.0712 8 1 5.9215 0.4632 -0.1622 9 6 6.9208 0.1208 -2.0364 10 8 6.6955 0.6086 -3.1237 11 7 8.1828 -0.2028 -1.6914 12 6 9.2826 0.0351 -2.6295 13 1 8.9336 -0.1324 -3.6485 14 6 9.7701 1.4785 -2.4882 15 6 10.4333 -0.9245 -2.3202 16 6 11.4357 -1.0837 -3.4778 17 7 11.4254 -2.5240 -3.1556 18 6 12.3063 -3.5555 -3.3425 19 1 12.0532 -4.5497 -3.0050 20 6 13.5248 -3.3233 -3.9658 21 7 13.8335 -2.1116 -4.3767 22 14 14.7269 -4.7303 -4.2201 23 1 14.0906 -5.7800 -5.0559 24 1 15.9445 -4.2238 -4.9027 25 1 15.1013 -5.3056 -2.9033 26 6 10.0841 -2.4059 -2.5513 27 6 5.6567 -1.6289 -0.7440 28 6 4.1647 -1.8547 -0.6358 29 8 3.6441 -2.8229 -0.1235 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 1.6768 1.9562 0.8900 37 1 1.6053 -1.7198 -1.2953 38 1 1.7516 -0.1582 -2.1370 39 1 4.4985 0.0699 -2.8180 40 1 4.0908 1.1784 -1.4745 41 1 8.3628 -0.5932 -0.8219 42 1 10.5882 1.6556 -3.1866 43 1 8.9501 2.1621 -2.7082 44 1 10.1196 1.6458 -1.4695 45 1 10.9018 -0.7293 -1.3556 46 1 11.0172 -0.8495 -4.4565 47 1 12.3957 -0.6002 -3.2972 48 1 14.6848 -1.9495 -4.8125 49 1 9.9651 -2.9779 -1.6311 50 1 9.2687 -2.5600 -3.2580 51 1 6.1467 -1.8583 0.2022 52 1 6.0765 -2.2327 -1.5484 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969794884.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:17 Heat of formation + Delta-G solvation = -28.572730 kcal Electronic energy + Delta-G solvation = -29832.048897 eV Core-core repulsion = 25832.877772 eV Total energy + Delta-G solvation = -3999.171125 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.14084 -39.63582 -38.12780 -37.03974 -35.84584 -34.88864 -32.58320 -32.01687 -30.34771 -28.20459 -27.51054 -27.41227 -26.72657 -24.89489 -24.20957 -23.22659 -21.30365 -20.92259 -20.27991 -19.54897 -19.09341 -17.64211 -17.19051 -16.81741 -16.23908 -16.09607 -15.53772 -15.11365 -14.93705 -14.79982 -14.47474 -14.21524 -13.96262 -13.86153 -13.60933 -13.41471 -13.24270 -13.11347 -13.04525 -12.66885 -12.38363 -12.19782 -12.12578 -11.86853 -11.69379 -11.64960 -11.58391 -11.42123 -11.25016 -11.24404 -11.10828 -10.88859 -10.70780 -10.39315 -10.28087 -10.00194 -9.84619 -9.66519 -9.43627 -8.99582 -8.91465 -8.80077 -6.89138 -5.77945 -3.10125 2.32526 2.51764 2.62464 3.13558 3.39208 3.43386 3.44505 3.92856 4.05077 4.41972 4.44261 4.44510 4.49908 4.60206 4.65092 4.87302 5.01699 5.08999 5.11110 5.14340 5.17381 5.23881 5.25255 5.36769 5.38082 5.41710 5.46975 5.50566 5.51521 5.59991 5.62663 5.70270 5.77680 5.86017 5.88246 5.95689 6.02732 6.22084 6.24696 6.32260 6.40690 6.52982 6.59491 6.75113 6.80729 7.20381 7.33835 7.50574 7.54983 7.90334 7.97442 8.17245 9.03872 9.69929 10.58680 11.39177 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022683 B = 0.002137 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.122456 B =13100.948653 C =13999.230020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.150 4.150 4 C 0.130 3.870 5 N -0.617 5.617 6 C 0.114 3.886 7 C -0.124 4.124 8 H 0.117 0.883 9 C 0.524 3.476 10 O -0.537 6.537 11 N -0.713 5.713 12 C 0.150 3.850 13 H 0.088 0.912 14 C -0.158 4.158 15 C -0.147 4.147 16 C 0.176 3.824 17 N -0.612 5.612 18 C -0.224 4.224 19 H 0.079 0.921 20 C -0.008 4.008 21 N -0.922 5.922 22 Si 0.912 3.088 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.125 3.875 27 C -0.147 4.147 28 C 0.521 3.479 29 O -0.530 6.530 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.400 0.600 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.089 0.911 46 H 0.027 0.973 47 H 0.075 0.925 48 H 0.254 0.746 49 H 0.041 0.959 50 H 0.032 0.968 51 H 0.111 0.889 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.692 10.235 9.950 26.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.134 4.134 3 C -0.207 4.207 4 C 0.008 3.992 5 N -0.351 5.351 6 C -0.009 4.009 7 C -0.146 4.146 8 H 0.135 0.865 9 C 0.309 3.691 10 O -0.415 6.415 11 N -0.363 5.363 12 C 0.045 3.955 13 H 0.106 0.894 14 C -0.216 4.216 15 C -0.167 4.167 16 C 0.050 3.950 17 N -0.338 5.338 18 C -0.352 4.352 19 H 0.096 0.904 20 C -0.204 4.204 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.212 1.212 24 H -0.215 1.215 25 H -0.211 1.211 26 C -0.001 4.001 27 C -0.187 4.187 28 C 0.308 3.692 29 O -0.406 6.406 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.234 0.766 42 H 0.090 0.910 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.107 0.893 46 H 0.045 0.955 47 H 0.093 0.907 48 H 0.064 0.936 49 H 0.059 0.941 50 H 0.049 0.951 51 H 0.130 0.870 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -22.871 9.924 9.297 26.608 hybrid contribution 0.802 -0.876 0.146 1.197 sum -22.069 9.048 9.443 25.653 Atomic orbital electron populations 1.21769 0.94399 1.02067 1.02058 1.21545 0.96125 0.96816 0.98945 1.21949 1.01368 0.95546 1.01884 1.21490 0.77949 1.01756 0.97973 1.48295 1.06286 1.22241 1.58286 1.22137 0.86342 0.92666 0.99750 1.22291 0.94422 0.97862 1.00053 0.86473 1.19988 0.83629 0.78139 0.87390 1.90721 1.83880 1.43962 1.22892 1.46122 1.06527 1.63451 1.20190 1.21155 0.85637 0.94964 0.93712 0.89385 1.22107 1.01411 0.95953 1.02126 1.23869 0.96214 0.94503 1.02156 1.22192 0.95857 0.85162 0.91826 1.45926 1.13099 1.05955 1.68786 1.18972 0.94975 0.88284 1.32924 0.90357 1.24784 0.97965 0.96911 1.00790 1.69793 1.23260 1.19098 1.44732 0.86202 0.80514 0.81199 0.77858 1.21197 1.21537 1.21085 1.22542 0.89376 0.92405 0.95801 1.22382 0.95046 0.95365 1.05957 1.20772 0.89530 0.81894 0.76974 1.90736 1.74307 1.30674 1.44917 0.92460 0.92416 0.92331 0.90777 0.92263 0.92525 0.92639 0.89899 0.90155 0.89006 0.89430 0.76602 0.91050 0.92816 0.92730 0.89284 0.95488 0.90691 0.93568 0.94096 0.95081 0.87026 0.86923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.19 37.16 0.34 -0.46 16 2 C -0.11 -0.77 3.13 -90.62 -0.28 -1.06 16 3 C -0.15 -0.87 8.58 37.15 0.32 -0.55 16 4 C 0.13 0.99 5.35 -4.04 -0.02 0.97 16 5 N -0.62 -5.50 2.70 -172.29 -0.47 -5.96 16 6 C 0.11 0.91 6.09 -3.02 -0.02 0.89 16 7 C -0.12 -0.96 3.56 -90.04 -0.32 -1.28 16 8 H 0.12 0.63 8.14 -51.93 -0.42 0.21 16 9 C 0.52 5.76 7.04 -10.99 -0.08 5.69 16 10 O -0.54 -7.92 15.23 5.56 0.08 -7.83 16 11 N -0.71 -7.70 4.89 -53.81 -0.26 -7.96 16 12 C 0.15 2.08 2.29 -67.93 -0.16 1.93 16 13 H 0.09 1.45 7.48 -51.93 -0.39 1.06 16 14 C -0.16 -2.00 9.44 37.16 0.35 -1.65 16 15 C -0.15 -2.47 3.36 -89.70 -0.30 -2.77 16 16 C 0.18 3.94 6.98 -2.97 -0.02 3.92 16 17 N -0.61 -15.38 3.70 -177.89 -0.66 -16.04 16 18 C -0.22 -6.25 10.70 -15.06 -0.16 -6.41 16 19 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 21 N -0.92 -27.07 11.38 55.49 0.63 -26.44 16 22 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 C 0.12 2.41 8.37 -2.98 -0.02 2.39 16 27 C -0.15 -1.25 6.37 -26.74 -0.17 -1.42 16 28 C 0.52 5.77 8.02 -10.86 -0.09 5.68 16 29 O -0.53 -7.92 17.59 5.56 0.10 -7.82 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.36 5.68 -51.93 -0.29 0.06 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.72 7.92 -51.93 -0.41 0.31 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.89 7.07 -51.93 -0.37 0.52 16 40 H 0.09 0.57 5.92 -51.93 -0.31 0.26 16 41 H 0.40 3.40 8.60 -40.82 -0.35 3.04 16 42 H 0.07 0.95 8.09 -51.92 -0.42 0.53 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 46 H 0.03 0.63 8.03 -51.93 -0.42 0.22 16 47 H 0.07 1.86 7.15 -51.93 -0.37 1.49 16 48 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 49 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.03 0.61 8.10 -51.93 -0.42 0.19 16 51 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 52 H 0.11 1.05 7.89 -51.93 -0.41 0.64 16 LS Contribution 414.26 15.07 6.24 6.24 Total: -1.00 -34.41 414.26 -9.28 -43.69 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -9.20 Total: -0.50 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -0.73 Total: 5.55 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: -0.76 Total: -56.40 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: 0.18 Total: -15.65 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.41 -9.28 -43.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969794884.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.121 kcal (2) G-P(sol) polarization free energy of solvation -34.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds