Wall clock time and date at job start Tue Mar 31 2020 21:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47387 * 2 1 4 4 C 1.53004 * 109.46935 * 239.99891 * 2 1 3 5 5 N 1.46498 * 109.47177 * 185.00082 * 4 2 1 6 6 C 1.46768 * 124.35413 * 269.73158 * 5 4 2 7 7 C 1.54659 * 105.38635 * 162.85258 * 6 5 4 8 8 H 1.08994 * 111.19165 * 267.59228 * 7 6 5 9 9 C 1.50696 * 110.85439 * 143.78682 * 7 6 5 10 10 O 1.21281 * 119.99777 * 6.33524 * 9 7 6 11 11 N 1.34776 * 120.00189 * 186.32764 * 9 7 6 12 12 C 1.46500 * 120.00313 * 180.02562 * 11 9 7 13 13 H 1.09000 * 109.47010 * 325.00754 * 12 11 9 14 14 C 1.53000 * 109.46698 * 85.00134 * 12 11 9 15 15 C 1.52995 * 109.47190 * 205.00399 * 12 11 9 16 16 C 1.53950 * 113.73956 * 161.68091 * 15 12 11 17 17 N 1.47588 * 86.11407 * 222.04514 * 16 15 12 18 18 C 1.36931 * 134.49216 * 204.63871 * 17 16 15 19 19 H 1.08001 * 120.00285 * 180.02562 * 18 17 16 20 20 C 1.38820 * 120.00118 * 0.02562 * 18 17 16 21 21 N 1.31619 * 119.99820 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00063 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46836 * 60.00221 * 22 20 18 24 24 H 1.48498 * 109.46833 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47010 * 300.00237 * 22 20 18 26 26 C 1.47582 * 91.01312 * 24.64191 * 17 16 15 27 27 C 1.54635 * 101.68427 * 25.76608 * 7 6 5 28 28 C 1.34423 * 124.34976 * 90.02538 * 5 4 2 29 29 O 1.21278 * 124.94042 * 0.43187 * 28 5 4 30 30 H 1.09001 * 109.46667 * 59.99507 * 1 2 3 31 31 H 1.08997 * 109.47403 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46636 * 299.99835 * 1 2 3 33 33 H 1.09002 * 109.47181 * 120.00404 * 2 1 3 34 34 H 1.09004 * 109.47432 * 179.97438 * 3 2 1 35 35 H 1.08991 * 109.47556 * 299.99952 * 3 2 1 36 36 H 1.08997 * 109.47098 * 60.00447 * 3 2 1 37 37 H 1.08997 * 109.47758 * 305.00457 * 4 2 1 38 38 H 1.09005 * 109.46711 * 65.00517 * 4 2 1 39 39 H 1.09000 * 110.24028 * 281.98581 * 6 5 4 40 40 H 1.09002 * 110.24130 * 43.97933 * 6 5 4 41 41 H 0.96998 * 119.99579 * 0.02562 * 11 9 7 42 42 H 1.09014 * 109.46591 * 180.02562 * 14 12 11 43 43 H 1.09000 * 109.47292 * 300.02413 * 14 12 11 44 44 H 1.08995 * 109.47164 * 60.03766 * 14 12 11 45 45 H 1.09000 * 112.94491 * 293.40895 * 15 12 11 46 46 H 1.08995 * 113.76608 * 336.34345 * 16 15 12 47 47 H 1.08999 * 113.76967 * 107.75070 * 16 15 12 48 48 H 0.96998 * 119.99798 * 180.02562 * 21 20 18 49 49 H 1.09005 * 113.76329 * 221.05797 * 26 17 16 50 50 H 1.08995 * 113.76971 * 89.66194 * 26 17 16 51 51 H 1.08997 * 110.48637 * 216.31466 * 27 7 6 52 52 H 1.08994 * 110.48741 * 93.66374 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 3.5000 -0.8265 -1.1906 6 6 4.4250 0.1743 -1.7355 7 6 5.7895 -0.1234 -1.0712 8 1 5.9215 0.4632 -0.1622 9 6 6.9208 0.1208 -2.0364 10 8 6.6955 0.6086 -3.1237 11 7 8.1828 -0.2028 -1.6914 12 6 9.2826 0.0351 -2.6295 13 1 8.9336 -0.1324 -3.6485 14 6 9.7701 1.4785 -2.4882 15 6 10.4333 -0.9245 -2.3202 16 6 11.4357 -1.0837 -3.4778 17 7 11.4254 -2.5240 -3.1556 18 6 12.3063 -3.5555 -3.3425 19 1 12.0532 -4.5497 -3.0050 20 6 13.5248 -3.3233 -3.9658 21 7 13.8335 -2.1116 -4.3767 22 14 14.7269 -4.7303 -4.2201 23 1 14.0906 -5.7800 -5.0559 24 1 15.9445 -4.2238 -4.9027 25 1 15.1013 -5.3056 -2.9033 26 6 10.0841 -2.4059 -2.5513 27 6 5.6567 -1.6289 -0.7440 28 6 4.1647 -1.8547 -0.6358 29 8 3.6441 -2.8229 -0.1235 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 1.6768 1.9562 0.8900 37 1 1.6053 -1.7198 -1.2953 38 1 1.7516 -0.1582 -2.1370 39 1 4.4985 0.0699 -2.8180 40 1 4.0908 1.1784 -1.4745 41 1 8.3628 -0.5932 -0.8219 42 1 10.5882 1.6556 -3.1866 43 1 8.9501 2.1621 -2.7082 44 1 10.1196 1.6458 -1.4695 45 1 10.9018 -0.7293 -1.3556 46 1 11.0172 -0.8495 -4.4565 47 1 12.3957 -0.6002 -3.2972 48 1 14.6848 -1.9495 -4.8125 49 1 9.9651 -2.9779 -1.6311 50 1 9.2687 -2.5600 -3.2580 51 1 6.1467 -1.8583 0.2022 52 1 6.0765 -2.2327 -1.5484 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969794884.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:16 Heat of formation + Delta-G solvation = -50.940985 kcal Electronic energy + Delta-G solvation = -29833.018857 eV Core-core repulsion = 25832.877772 eV Total energy + Delta-G solvation = -4000.141085 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.94962 -40.70595 -39.57796 -37.81357 -36.58066 -36.10679 -34.15912 -33.15284 -31.47236 -29.30737 -28.87524 -27.94429 -27.37852 -26.51294 -25.71665 -24.31025 -22.53083 -21.63440 -21.29188 -20.48874 -20.28734 -18.78166 -18.45578 -17.93127 -17.26322 -17.02598 -16.80158 -16.37390 -15.92396 -15.82323 -15.65265 -15.30348 -15.10259 -14.76790 -14.74583 -14.58092 -14.05627 -14.01386 -13.79007 -13.75340 -13.33611 -13.23467 -13.10206 -13.05033 -12.92893 -12.74330 -12.63719 -12.50248 -12.44284 -12.35152 -12.14990 -11.99708 -11.78558 -11.76312 -11.64454 -11.53868 -11.19279 -11.06606 -10.84784 -10.67696 -9.99612 -9.70291 -8.90432 -7.89954 -5.22971 1.45487 1.48556 1.48913 1.54686 1.63967 1.88424 2.24665 2.48096 3.19514 3.30597 3.35083 3.42399 3.67639 3.84898 3.87970 3.93745 3.97432 4.02152 4.14645 4.21398 4.33359 4.46921 4.50230 4.51628 4.60887 4.62760 4.63331 4.78546 4.80993 4.81484 4.84435 4.89707 4.91123 4.95472 5.00846 5.02168 5.04931 5.15608 5.24671 5.27364 5.33966 5.37109 5.42923 5.55804 5.58832 5.59659 5.69467 5.96383 6.05810 6.63937 6.93542 7.08774 7.30979 7.62087 8.57884 9.26686 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022683 B = 0.002137 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.122456 B =13100.948653 C =13999.230020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C -0.148 4.148 4 C 0.124 3.876 5 N -0.611 5.611 6 C 0.114 3.886 7 C -0.108 4.108 8 H 0.154 0.846 9 C 0.527 3.473 10 O -0.575 6.575 11 N -0.703 5.703 12 C 0.163 3.837 13 H 0.061 0.939 14 C -0.151 4.151 15 C -0.107 4.107 16 C 0.169 3.831 17 N -0.645 5.645 18 C -0.236 4.236 19 H 0.082 0.918 20 C -0.068 4.068 21 N -0.953 5.953 22 Si 0.977 3.023 23 H -0.281 1.281 24 H -0.294 1.294 25 H -0.274 1.274 26 C 0.127 3.873 27 C -0.141 4.141 28 C 0.512 3.488 29 O -0.577 6.577 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.110 0.890 41 H 0.416 0.584 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.074 0.926 45 H 0.106 0.894 46 H 0.010 0.990 47 H 0.045 0.955 48 H 0.249 0.751 49 H 0.062 0.938 50 H 0.032 0.968 51 H 0.135 0.865 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.697 11.077 11.731 28.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.129 4.129 3 C -0.205 4.205 4 C 0.003 3.997 5 N -0.343 5.343 6 C -0.008 4.008 7 C -0.129 4.129 8 H 0.172 0.828 9 C 0.314 3.686 10 O -0.454 6.454 11 N -0.354 5.354 12 C 0.057 3.943 13 H 0.079 0.921 14 C -0.210 4.210 15 C -0.127 4.127 16 C 0.043 3.957 17 N -0.371 5.371 18 C -0.364 4.364 19 H 0.100 0.900 20 C -0.261 4.261 21 N -0.602 5.602 22 Si 0.805 3.195 23 H -0.207 1.207 24 H -0.220 1.220 25 H -0.200 1.200 26 C 0.002 3.998 27 C -0.182 4.182 28 C 0.301 3.699 29 O -0.457 6.457 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.094 0.906 40 H 0.128 0.872 41 H 0.253 0.747 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.093 0.907 45 H 0.124 0.876 46 H 0.028 0.972 47 H 0.063 0.937 48 H 0.057 0.943 49 H 0.080 0.920 50 H 0.050 0.950 51 H 0.153 0.847 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -23.916 10.780 11.109 28.489 hybrid contribution 1.022 -1.135 -0.453 1.593 sum -22.894 9.645 10.656 27.032 Atomic orbital electron populations 1.21755 0.93487 1.01950 1.02877 1.21468 0.96871 0.97222 0.97332 1.21930 1.01338 0.94608 1.02591 1.21632 0.77307 1.01386 0.99377 1.48402 1.06945 1.21859 1.57101 1.22192 0.86454 0.93354 0.98826 1.22253 0.92557 0.97802 1.00288 0.82815 1.20435 0.83966 0.77019 0.87203 1.90723 1.84384 1.45641 1.24696 1.45900 1.05806 1.63472 1.20254 1.20729 0.85438 0.94983 0.93141 0.92057 1.22038 1.01087 0.94778 1.03067 1.23444 0.95310 0.93717 1.00256 1.22109 0.96062 0.84229 0.93296 1.46380 1.15164 1.06349 1.69240 1.19380 0.95695 0.89296 1.32075 0.90032 1.25621 0.99883 0.99278 1.01323 1.69985 1.23380 1.20917 1.45889 0.85172 0.77983 0.78335 0.77967 1.20717 1.22020 1.19971 1.22701 0.86814 0.94256 0.96041 1.22380 0.93260 0.95640 1.06880 1.21217 0.90721 0.81541 0.76450 1.90709 1.75329 1.32495 1.47186 0.91341 0.93055 0.91781 0.92853 0.92246 0.91602 0.92181 0.91519 0.88352 0.90634 0.87227 0.74706 0.92305 0.92476 0.90674 0.87573 0.97240 0.93660 0.94254 0.91955 0.94995 0.84740 0.87740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.19 71.98 0.66 -0.72 16 2 C -0.11 -1.33 3.13 -10.79 -0.03 -1.36 16 3 C -0.15 -1.34 8.58 71.98 0.62 -0.72 16 4 C 0.12 1.78 5.35 86.38 0.46 2.24 16 5 N -0.61 -10.03 2.70 -817.61 -2.21 -12.24 16 6 C 0.11 1.56 6.09 86.89 0.53 2.09 16 7 C -0.11 -1.31 3.56 -10.42 -0.04 -1.35 16 8 H 0.15 0.87 8.14 -2.39 -0.02 0.85 16 9 C 0.53 10.26 7.04 87.66 0.62 10.88 16 10 O -0.57 -16.11 15.23 -3.03 -0.05 -16.16 16 11 N -0.70 -13.14 4.89 -442.55 -2.17 -15.30 16 12 C 0.16 4.27 2.29 44.99 0.10 4.37 16 13 H 0.06 2.00 7.48 -2.39 -0.02 1.98 16 14 C -0.15 -3.57 9.44 71.98 0.68 -2.89 16 15 C -0.11 -3.46 3.36 -10.14 -0.03 -3.49 16 16 C 0.17 7.76 6.98 86.48 0.60 8.36 16 17 N -0.64 -32.55 3.70 -716.73 -2.65 -35.20 16 18 C -0.24 -13.24 10.70 84.04 0.90 -12.34 16 19 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 20 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 21 N -0.95 -57.43 11.38 21.65 0.25 -57.19 16 22 Si 0.98 45.81 29.55 68.60 2.03 47.84 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 25 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 26 C 0.13 4.72 8.37 86.48 0.72 5.44 16 27 C -0.14 -2.06 6.37 30.59 0.19 -1.86 16 28 C 0.51 10.84 8.02 87.90 0.70 11.54 16 29 O -0.58 -17.33 17.59 -3.02 -0.05 -17.38 16 30 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.06 0.53 5.68 -2.38 -0.01 0.52 16 35 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.07 1.18 7.92 -2.39 -0.02 1.16 16 38 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 39 H 0.08 1.35 7.07 -2.39 -0.02 1.33 16 40 H 0.11 1.06 5.92 -2.39 -0.01 1.05 16 41 H 0.42 5.35 8.60 -92.71 -0.80 4.55 16 42 H 0.06 1.54 8.09 -2.38 -0.02 1.52 16 43 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 46 H 0.01 0.47 8.03 -2.39 -0.02 0.46 16 47 H 0.04 2.33 7.15 -2.39 -0.02 2.31 16 48 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 49 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 50 H 0.03 1.21 8.10 -2.39 -0.02 1.19 16 51 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 52 H 0.10 1.75 7.89 -2.39 -0.02 1.73 16 Total: -1.00 -77.59 414.26 2.41 -75.18 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.10 Total: 13.69 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: 7.16 Total: 16.76 kcal Atomic # 7 Polarization: -113.15 SS G_CDS: -6.78 Total: -119.93 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -0.10 Total: -33.54 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -77.59 2.41 -75.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969794884.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.235 kcal (2) G-P(sol) polarization free energy of solvation -77.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds