Wall clock time and date at job start Tue Mar 31 2020 21:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47411 * 2 1 4 4 C 1.53001 * 109.47187 * 120.00385 * 2 1 3 5 5 N 1.46493 * 109.47015 * 174.99827 * 4 2 1 6 6 C 1.46754 * 124.35265 * 90.00066 * 5 4 2 7 7 C 1.54486 * 105.47878 * 197.03432 * 6 5 4 8 8 H 1.08993 * 110.96636 * 92.73350 * 7 6 5 9 9 C 1.50697 * 110.97302 * 216.46458 * 7 6 5 10 10 O 1.21281 * 119.99770 * 359.97438 * 9 7 6 11 11 N 1.34777 * 119.99733 * 179.97438 * 9 7 6 12 12 C 1.46498 * 119.99524 * 180.02562 * 11 9 7 13 13 H 1.08999 * 109.47133 * 324.99621 * 12 11 9 14 14 C 1.52999 * 109.47427 * 84.99953 * 12 11 9 15 15 C 1.53001 * 109.46791 * 204.99694 * 12 11 9 16 16 C 1.53501 * 114.20704 * 179.97438 * 15 12 11 17 17 N 1.47074 * 87.98318 * 87.71800 * 16 15 12 18 18 C 1.36935 * 136.05671 * 207.08663 * 17 16 15 19 19 H 1.07998 * 120.00313 * 6.65455 * 18 17 16 20 20 C 1.38813 * 119.99459 * 186.65797 * 18 17 16 21 21 N 1.31613 * 120.00577 * 6.43843 * 20 18 17 22 22 Si 1.86803 * 119.99662 * 186.43692 * 20 18 17 23 23 H 1.48506 * 109.47126 * 84.98691 * 22 20 18 24 24 H 1.48503 * 109.47334 * 204.98746 * 22 20 18 25 25 H 1.48500 * 109.47287 * 324.98920 * 22 20 18 26 26 C 1.47073 * 87.88168 * 27.34207 * 17 16 15 27 27 C 1.54630 * 101.75784 * 334.58465 * 7 6 5 28 28 C 1.34418 * 124.34678 * 270.01847 * 5 4 2 29 29 O 1.21279 * 124.94806 * 359.53687 * 28 5 4 30 30 H 1.09002 * 109.47002 * 300.00526 * 1 2 3 31 31 H 1.09006 * 109.47011 * 59.99475 * 1 2 3 32 32 H 1.08989 * 109.47518 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46604 * 240.00097 * 2 1 3 34 34 H 1.08995 * 109.47126 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47144 * 300.00046 * 3 2 1 36 36 H 1.08999 * 109.47082 * 60.00085 * 3 2 1 37 37 H 1.08998 * 109.47281 * 54.99060 * 4 2 1 38 38 H 1.09007 * 109.46626 * 294.99846 * 4 2 1 39 39 H 1.08997 * 110.25058 * 78.03571 * 6 5 4 40 40 H 1.09006 * 110.24836 * 316.03194 * 6 5 4 41 41 H 0.96998 * 119.99873 * 359.97438 * 11 9 7 42 42 H 1.09004 * 109.47335 * 179.97438 * 14 12 11 43 43 H 1.08998 * 109.46855 * 299.99690 * 14 12 11 44 44 H 1.08999 * 109.47236 * 59.99730 * 14 12 11 45 45 H 1.09004 * 113.28077 * 46.93535 * 15 12 11 46 46 H 1.09001 * 113.46856 * 332.94488 * 16 15 12 47 47 H 1.09002 * 113.52279 * 202.50408 * 16 15 12 48 48 H 0.97002 * 120.00127 * 180.02562 * 21 20 18 49 49 H 1.09001 * 113.46425 * 87.43869 * 26 17 16 50 50 H 1.09003 * 113.46427 * 217.87257 * 26 17 16 51 51 H 1.09006 * 110.48301 * 143.47619 * 27 7 6 52 52 H 1.09001 * 110.48615 * 266.11495 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1905 6 6 4.4249 0.1769 1.7303 7 6 5.7894 -0.1231 1.0711 8 1 5.9214 0.4646 0.1627 9 6 6.9203 0.1205 2.0369 10 8 6.6839 0.5025 3.1634 11 7 8.1943 -0.0862 1.6487 12 6 9.2936 0.1501 2.5878 13 1 9.0474 0.9956 3.2300 14 6 9.5075 -1.0977 3.4470 15 6 10.5734 0.4577 1.8077 16 6 11.8000 0.7248 2.6911 17 7 12.0552 -0.7236 2.6849 18 6 12.6628 -1.6213 3.5215 19 1 13.0035 -1.3057 4.4965 20 6 12.8409 -2.9370 3.1163 21 7 12.5426 -3.2924 1.8847 22 14 13.5041 -4.2030 4.3192 23 1 12.3852 -4.7524 5.1265 24 1 14.1596 -5.3037 3.5681 25 1 14.4945 -3.5595 5.2193 26 6 11.3762 -0.7824 1.3816 27 6 5.6565 -1.6283 0.7427 28 6 4.1646 -1.8543 0.6348 29 8 3.6440 -2.8223 0.1222 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0275 0.0005 33 1 1.8933 -0.5139 -0.8901 34 1 3.1300 1.4424 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.6053 -1.7198 1.2952 38 1 1.7516 -0.1583 2.1370 39 1 4.4993 0.0775 2.8132 40 1 4.0903 1.1799 1.4650 41 1 8.3832 -0.3921 0.7478 42 1 10.3257 -0.9220 4.1454 43 1 8.5958 -1.3168 4.0027 44 1 9.7537 -1.9433 2.8048 45 1 10.4279 1.1888 1.0124 46 1 11.5482 1.1169 3.6765 47 1 12.5770 1.3046 2.1928 48 1 12.6668 -4.2119 1.6017 49 1 12.0409 -0.6001 0.5372 50 1 10.7634 -1.6744 1.2513 51 1 6.1465 -1.8570 -0.2038 52 1 6.0767 -2.2327 1.5466 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969794885.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:22 Heat of formation + Delta-G solvation = -15.923320 kcal Electronic energy + Delta-G solvation = -30280.722199 eV Core-core repulsion = 26282.099594 eV Total energy + Delta-G solvation = -3998.622605 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.06219 -39.66487 -38.47625 -36.98358 -35.76065 -34.53267 -32.42897 -32.06026 -29.64665 -28.14474 -27.74361 -27.34017 -26.62024 -24.75706 -24.33429 -23.21651 -21.44246 -20.95654 -20.00202 -19.48717 -18.63042 -17.51942 -17.10234 -16.79174 -16.14589 -15.84185 -15.42292 -15.13045 -14.96388 -14.74858 -14.52543 -14.31303 -13.87270 -13.83661 -13.57005 -13.36546 -13.21792 -13.01923 -12.64515 -12.63498 -12.30850 -12.15394 -11.95225 -11.72343 -11.61336 -11.51460 -11.24457 -11.19724 -11.13582 -11.05880 -11.01509 -10.80552 -10.63605 -10.40438 -10.14244 -9.91067 -9.75737 -9.66902 -9.21886 -8.90022 -8.75746 -8.75025 -6.86469 -5.82083 -3.12231 2.39488 2.62588 2.71011 3.26186 3.37684 3.43002 3.44208 4.03160 4.15918 4.43700 4.47139 4.50158 4.58783 4.67729 4.71048 4.98240 5.06774 5.16366 5.21566 5.23815 5.25559 5.28783 5.32178 5.34253 5.43797 5.47581 5.51823 5.55341 5.55880 5.69947 5.74128 5.88687 5.90697 5.92807 6.01813 6.26217 6.30840 6.35757 6.44782 6.59420 6.66220 6.67634 6.87198 6.95440 7.13142 7.21889 7.41642 7.50618 7.68632 7.93219 7.97363 8.31021 9.00340 9.67030 10.61210 11.36258 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019740 B = 0.002394 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.122627 B =11694.824004 C =12415.130065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.150 4.150 4 C 0.130 3.870 5 N -0.617 5.617 6 C 0.113 3.887 7 C -0.124 4.124 8 H 0.115 0.885 9 C 0.524 3.476 10 O -0.540 6.540 11 N -0.712 5.712 12 C 0.175 3.825 13 H 0.078 0.922 14 C -0.146 4.146 15 C -0.162 4.162 16 C 0.125 3.875 17 N -0.603 5.603 18 C -0.215 4.215 19 H 0.080 0.920 20 C -0.004 4.004 21 N -0.918 5.918 22 Si 0.907 3.093 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.165 3.835 27 C -0.145 4.145 28 C 0.521 3.479 29 O -0.531 6.531 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.400 0.600 42 H 0.087 0.913 43 H 0.029 0.971 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.041 0.959 47 H 0.034 0.966 48 H 0.253 0.747 49 H 0.027 0.973 50 H 0.065 0.935 51 H 0.112 0.888 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.120 10.606 -5.182 23.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.134 4.134 3 C -0.208 4.208 4 C 0.008 3.992 5 N -0.351 5.351 6 C -0.010 4.010 7 C -0.146 4.146 8 H 0.133 0.867 9 C 0.308 3.692 10 O -0.418 6.418 11 N -0.362 5.362 12 C 0.072 3.928 13 H 0.096 0.904 14 C -0.204 4.204 15 C -0.182 4.182 16 C -0.002 4.002 17 N -0.329 5.329 18 C -0.343 4.343 19 H 0.098 0.902 20 C -0.201 4.201 21 N -0.565 5.565 22 Si 0.738 3.262 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.208 1.208 26 C 0.039 3.961 27 C -0.186 4.186 28 C 0.309 3.691 29 O -0.407 6.407 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.234 0.766 42 H 0.106 0.894 43 H 0.048 0.952 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.060 0.940 47 H 0.052 0.948 48 H 0.063 0.937 49 H 0.045 0.955 50 H 0.083 0.917 51 H 0.130 0.870 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -20.473 10.040 -4.502 23.242 hybrid contribution 0.774 -0.787 -0.036 1.104 sum -19.699 9.252 -4.538 22.232 Atomic orbital electron populations 1.21769 0.94434 1.02044 1.02030 1.21548 0.96090 0.96829 0.98982 1.21952 1.01417 0.95539 1.01850 1.21481 0.78017 1.01722 0.97936 1.48281 1.06240 1.22172 1.58400 1.22118 0.86384 0.92500 1.00012 1.22243 0.94440 0.97891 1.00065 0.86662 1.19928 0.83703 0.77589 0.87939 1.90704 1.83990 1.46584 1.20502 1.46150 1.05682 1.67360 1.16999 1.20604 0.83392 0.99093 0.89722 0.90397 1.22151 1.00389 0.97440 1.00455 1.23381 0.94220 1.01238 0.99374 1.22355 0.92500 0.88619 0.96684 1.45762 1.66784 1.00933 1.19438 1.18848 1.32012 0.88599 0.94809 0.90242 1.24763 1.01540 0.97507 0.96298 1.69821 1.53742 1.17351 1.15564 0.86218 0.78584 0.81395 0.80050 1.21422 1.21739 1.20761 1.22077 0.91573 0.93625 0.88777 1.22356 0.94901 0.95323 1.06000 1.20784 0.89550 0.81882 0.76894 1.90731 1.74328 1.30713 1.44937 0.92483 0.92343 0.92432 0.90764 0.92219 0.92646 0.92546 0.89928 0.90185 0.88887 0.89500 0.76594 0.89435 0.95226 0.91120 0.91137 0.94040 0.94835 0.93660 0.95530 0.91702 0.86968 0.86990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.19 37.16 0.34 -0.52 16 2 C -0.11 -0.84 3.13 -90.62 -0.28 -1.12 16 3 C -0.15 -0.95 8.57 37.16 0.32 -0.63 16 4 C 0.13 1.08 5.35 -4.04 -0.02 1.06 16 5 N -0.62 -6.04 2.71 -172.42 -0.47 -6.51 16 6 C 0.11 1.01 6.14 -3.12 -0.02 0.99 16 7 C -0.12 -1.12 3.54 -90.14 -0.32 -1.44 16 8 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 9 C 0.52 6.57 7.02 -10.99 -0.08 6.49 16 10 O -0.54 -8.69 15.17 5.56 0.08 -8.60 16 11 N -0.71 -9.12 5.08 -53.81 -0.27 -9.40 16 12 C 0.18 2.80 2.76 -67.93 -0.19 2.61 16 13 H 0.08 1.30 7.58 -51.93 -0.39 0.90 16 14 C -0.15 -2.82 8.07 37.16 0.30 -2.52 16 15 C -0.16 -2.67 4.24 -89.97 -0.38 -3.05 16 16 C 0.13 2.37 7.85 -8.50 -0.07 2.31 16 17 N -0.60 -14.15 2.17 -184.56 -0.40 -14.55 16 18 C -0.22 -5.67 9.59 -15.06 -0.14 -5.81 16 19 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 20 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 21 N -0.92 -25.99 11.81 55.49 0.66 -25.34 16 22 Si 0.91 21.63 29.56 -169.99 -5.02 16.61 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.17 3.48 6.23 -8.37 -0.05 3.43 16 27 C -0.15 -1.45 6.41 -26.74 -0.17 -1.62 16 28 C 0.52 6.34 8.02 -10.86 -0.09 6.25 16 29 O -0.53 -8.44 17.59 5.56 0.10 -8.34 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.35 8.14 -51.94 -0.42 -0.07 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.40 5.65 -51.93 -0.29 0.10 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.77 7.92 -51.93 -0.41 0.36 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.09 0.99 6.96 -51.93 -0.36 0.63 16 40 H 0.09 0.63 5.90 -51.93 -0.31 0.32 16 41 H 0.40 4.32 8.60 -40.82 -0.35 3.96 16 42 H 0.09 1.88 5.94 -51.93 -0.31 1.57 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 1.54 6.33 -51.93 -0.33 1.21 16 45 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.04 0.76 8.12 -51.93 -0.42 0.33 16 47 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 49 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.06 1.48 6.19 -51.93 -0.32 1.16 16 51 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 52 H 0.11 1.25 7.89 -51.93 -0.41 0.84 16 LS Contribution 406.10 15.07 6.12 6.12 Total: -1.00 -32.43 406.10 -9.10 -41.53 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -8.95 Total: 2.27 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -0.95 Total: 6.20 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: -0.48 Total: -55.79 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: 0.18 Total: -16.94 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.43 -9.10 -41.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969794885.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.607 kcal (2) G-P(sol) polarization free energy of solvation -32.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds