Wall clock time and date at job start Tue Mar 31 2020 21:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47411 * 2 1 4 4 C 1.53001 * 109.47187 * 120.00385 * 2 1 3 5 5 N 1.46493 * 109.47015 * 174.99827 * 4 2 1 6 6 C 1.46754 * 124.35265 * 90.00066 * 5 4 2 7 7 C 1.54486 * 105.47878 * 197.03432 * 6 5 4 8 8 H 1.08993 * 110.96636 * 92.73350 * 7 6 5 9 9 C 1.50697 * 110.97302 * 216.46458 * 7 6 5 10 10 O 1.21281 * 119.99770 * 359.97438 * 9 7 6 11 11 N 1.34777 * 119.99733 * 179.97438 * 9 7 6 12 12 C 1.46498 * 119.99524 * 180.02562 * 11 9 7 13 13 H 1.08999 * 109.47133 * 324.99621 * 12 11 9 14 14 C 1.52999 * 109.47427 * 84.99953 * 12 11 9 15 15 C 1.53001 * 109.46791 * 204.99694 * 12 11 9 16 16 C 1.53501 * 114.20704 * 179.97438 * 15 12 11 17 17 N 1.47074 * 87.98318 * 87.71800 * 16 15 12 18 18 C 1.36935 * 136.05671 * 207.08663 * 17 16 15 19 19 H 1.07998 * 120.00313 * 6.65455 * 18 17 16 20 20 C 1.38813 * 119.99459 * 186.65797 * 18 17 16 21 21 N 1.31613 * 120.00577 * 6.43843 * 20 18 17 22 22 Si 1.86803 * 119.99662 * 186.43692 * 20 18 17 23 23 H 1.48506 * 109.47126 * 84.98691 * 22 20 18 24 24 H 1.48503 * 109.47334 * 204.98746 * 22 20 18 25 25 H 1.48500 * 109.47287 * 324.98920 * 22 20 18 26 26 C 1.47073 * 87.88168 * 27.34207 * 17 16 15 27 27 C 1.54630 * 101.75784 * 334.58465 * 7 6 5 28 28 C 1.34418 * 124.34678 * 270.01847 * 5 4 2 29 29 O 1.21279 * 124.94806 * 359.53687 * 28 5 4 30 30 H 1.09002 * 109.47002 * 300.00526 * 1 2 3 31 31 H 1.09006 * 109.47011 * 59.99475 * 1 2 3 32 32 H 1.08989 * 109.47518 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46604 * 240.00097 * 2 1 3 34 34 H 1.08995 * 109.47126 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47144 * 300.00046 * 3 2 1 36 36 H 1.08999 * 109.47082 * 60.00085 * 3 2 1 37 37 H 1.08998 * 109.47281 * 54.99060 * 4 2 1 38 38 H 1.09007 * 109.46626 * 294.99846 * 4 2 1 39 39 H 1.08997 * 110.25058 * 78.03571 * 6 5 4 40 40 H 1.09006 * 110.24836 * 316.03194 * 6 5 4 41 41 H 0.96998 * 119.99873 * 359.97438 * 11 9 7 42 42 H 1.09004 * 109.47335 * 179.97438 * 14 12 11 43 43 H 1.08998 * 109.46855 * 299.99690 * 14 12 11 44 44 H 1.08999 * 109.47236 * 59.99730 * 14 12 11 45 45 H 1.09004 * 113.28077 * 46.93535 * 15 12 11 46 46 H 1.09001 * 113.46856 * 332.94488 * 16 15 12 47 47 H 1.09002 * 113.52279 * 202.50408 * 16 15 12 48 48 H 0.97002 * 120.00127 * 180.02562 * 21 20 18 49 49 H 1.09001 * 113.46425 * 87.43869 * 26 17 16 50 50 H 1.09003 * 113.46427 * 217.87257 * 26 17 16 51 51 H 1.09006 * 110.48301 * 143.47619 * 27 7 6 52 52 H 1.09001 * 110.48615 * 266.11495 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1905 6 6 4.4249 0.1769 1.7303 7 6 5.7894 -0.1231 1.0711 8 1 5.9214 0.4646 0.1627 9 6 6.9203 0.1205 2.0369 10 8 6.6839 0.5025 3.1634 11 7 8.1943 -0.0862 1.6487 12 6 9.2936 0.1501 2.5878 13 1 9.0474 0.9956 3.2300 14 6 9.5075 -1.0977 3.4470 15 6 10.5734 0.4577 1.8077 16 6 11.8000 0.7248 2.6911 17 7 12.0552 -0.7236 2.6849 18 6 12.6628 -1.6213 3.5215 19 1 13.0035 -1.3057 4.4965 20 6 12.8409 -2.9370 3.1163 21 7 12.5426 -3.2924 1.8847 22 14 13.5041 -4.2030 4.3192 23 1 12.3852 -4.7524 5.1265 24 1 14.1596 -5.3037 3.5681 25 1 14.4945 -3.5595 5.2193 26 6 11.3762 -0.7824 1.3816 27 6 5.6565 -1.6283 0.7427 28 6 4.1646 -1.8543 0.6348 29 8 3.6440 -2.8223 0.1222 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0275 0.0005 33 1 1.8933 -0.5139 -0.8901 34 1 3.1300 1.4424 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.6053 -1.7198 1.2952 38 1 1.7516 -0.1583 2.1370 39 1 4.4993 0.0775 2.8132 40 1 4.0903 1.1799 1.4650 41 1 8.3832 -0.3921 0.7478 42 1 10.3257 -0.9220 4.1454 43 1 8.5958 -1.3168 4.0027 44 1 9.7537 -1.9433 2.8048 45 1 10.4279 1.1888 1.0124 46 1 11.5482 1.1169 3.6765 47 1 12.5770 1.3046 2.1928 48 1 12.6668 -4.2119 1.6017 49 1 12.0409 -0.6001 0.5372 50 1 10.7634 -1.6744 1.2513 51 1 6.1465 -1.8570 -0.2038 52 1 6.0767 -2.2327 1.5466 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969794885.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:21 Heat of formation + Delta-G solvation = -35.840615 kcal Electronic energy + Delta-G solvation = -30281.585878 eV Core-core repulsion = 26282.099594 eV Total energy + Delta-G solvation = -3999.486284 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.98050 -40.93246 -39.81620 -37.82664 -36.54909 -35.83518 -34.16044 -33.07594 -31.01147 -29.56205 -28.89713 -27.92914 -27.35064 -26.38412 -25.91559 -24.36027 -22.86458 -21.65840 -21.05421 -20.30769 -20.04162 -18.69113 -18.42106 -17.92805 -17.08029 -17.01731 -16.85498 -16.47928 -16.02737 -15.89518 -15.65054 -15.53265 -15.12080 -14.71393 -14.61879 -14.45813 -14.38771 -13.85710 -13.78413 -13.62449 -13.48934 -13.09954 -12.99973 -12.89078 -12.75073 -12.74392 -12.56859 -12.50474 -12.41801 -12.37101 -12.15047 -12.04187 -11.76031 -11.63930 -11.63389 -11.46441 -11.16464 -10.90878 -10.77296 -10.62555 -9.98422 -9.71183 -8.76743 -7.87081 -5.14834 1.45550 1.45955 1.47402 1.53716 1.62124 1.88034 2.24806 2.50275 3.19025 3.35513 3.37284 3.58585 3.70910 3.81339 3.83970 3.92430 3.96130 3.98944 4.14805 4.19047 4.43190 4.46539 4.49163 4.58442 4.61574 4.63219 4.75965 4.76851 4.81133 4.84327 4.90513 4.93456 4.94471 5.02559 5.04963 5.07694 5.13839 5.18609 5.25057 5.32159 5.34023 5.43646 5.55347 5.58357 5.58955 5.70175 5.79981 5.99762 6.03103 6.64224 6.98529 7.06339 7.29250 7.67317 8.69205 9.31288 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019740 B = 0.002394 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.122627 B =11694.824004 C =12415.130065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 C -0.148 4.148 4 C 0.124 3.876 5 N -0.609 5.609 6 C 0.114 3.886 7 C -0.108 4.108 8 H 0.154 0.846 9 C 0.528 3.472 10 O -0.574 6.574 11 N -0.706 5.706 12 C 0.186 3.814 13 H 0.083 0.917 14 C -0.131 4.131 15 C -0.125 4.125 16 C 0.121 3.879 17 N -0.631 5.631 18 C -0.211 4.211 19 H 0.078 0.922 20 C -0.060 4.060 21 N -0.947 5.947 22 Si 0.961 3.039 23 H -0.290 1.290 24 H -0.298 1.298 25 H -0.272 1.272 26 C 0.164 3.836 27 C -0.142 4.142 28 C 0.514 3.486 29 O -0.577 6.577 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.113 0.887 41 H 0.413 0.587 42 H 0.061 0.939 43 H 0.025 0.975 44 H 0.040 0.960 45 H 0.113 0.887 46 H 0.050 0.950 47 H 0.048 0.952 48 H 0.245 0.755 49 H 0.016 0.984 50 H 0.040 0.960 51 H 0.130 0.870 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.136 13.291 -5.581 25.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.129 4.129 3 C -0.205 4.205 4 C 0.003 3.997 5 N -0.341 5.341 6 C -0.008 4.008 7 C -0.130 4.130 8 H 0.172 0.828 9 C 0.314 3.686 10 O -0.453 6.453 11 N -0.356 5.356 12 C 0.081 3.919 13 H 0.101 0.899 14 C -0.189 4.189 15 C -0.145 4.145 16 C -0.004 4.004 17 N -0.357 5.357 18 C -0.340 4.340 19 H 0.096 0.904 20 C -0.253 4.253 21 N -0.596 5.596 22 Si 0.791 3.209 23 H -0.217 1.217 24 H -0.225 1.225 25 H -0.197 1.197 26 C 0.038 3.962 27 C -0.182 4.182 28 C 0.302 3.698 29 O -0.457 6.457 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.119 0.881 39 H 0.096 0.904 40 H 0.131 0.869 41 H 0.249 0.751 42 H 0.080 0.920 43 H 0.044 0.956 44 H 0.059 0.941 45 H 0.131 0.869 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.054 0.946 49 H 0.034 0.966 50 H 0.059 0.941 51 H 0.148 0.852 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -21.498 12.786 -4.896 25.487 hybrid contribution 1.047 -1.561 0.157 1.886 sum -20.451 11.225 -4.739 23.805 Atomic orbital electron populations 1.21753 0.93405 1.01945 1.02929 1.21473 0.96930 0.97271 0.97260 1.21937 1.01337 0.94550 1.02671 1.21654 0.77114 1.01438 0.99494 1.48379 1.07027 1.21655 1.57083 1.22184 0.86199 0.93352 0.99078 1.22217 0.92818 0.97513 1.00436 0.82842 1.20409 0.83988 0.76330 0.87869 1.90701 1.84439 1.48024 1.22164 1.45977 1.05191 1.67399 1.17070 1.20292 0.84352 0.97286 0.89931 0.89929 1.21932 0.99054 0.98084 0.99851 1.23122 0.92980 0.99150 0.99243 1.22562 0.93808 0.86145 0.97922 1.46046 1.66583 1.03039 1.20041 1.19104 1.30295 0.89343 0.95236 0.90389 1.25390 1.03071 0.99194 0.97655 1.69962 1.55751 1.16936 1.16966 0.85348 0.77952 0.79236 0.78366 1.21711 1.22508 1.19724 1.22055 0.91660 0.94845 0.87650 1.22336 0.93535 0.95882 1.06464 1.21127 0.90495 0.81653 0.76504 1.90703 1.75257 1.32532 1.47199 0.91243 0.91753 0.93094 0.92967 0.92273 0.92140 0.91453 0.91533 0.88139 0.90423 0.86866 0.75072 0.91962 0.95575 0.94126 0.86946 0.93186 0.93436 0.94570 0.96633 0.94117 0.85199 0.88399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.19 71.98 0.66 -0.82 16 2 C -0.11 -1.44 3.13 -10.79 -0.03 -1.48 16 3 C -0.15 -1.45 8.57 71.98 0.62 -0.84 16 4 C 0.12 1.92 5.35 86.38 0.46 2.38 16 5 N -0.61 -11.11 2.71 -818.01 -2.21 -13.32 16 6 C 0.11 1.75 6.14 86.84 0.53 2.29 16 7 C -0.11 -1.63 3.54 -10.48 -0.04 -1.67 16 8 H 0.15 1.25 8.14 -2.39 -0.02 1.23 16 9 C 0.53 11.93 7.02 87.66 0.62 12.54 16 10 O -0.57 -17.36 15.17 -3.03 -0.05 -17.40 16 11 N -0.71 -16.30 5.08 -442.54 -2.25 -18.55 16 12 C 0.19 5.58 2.76 44.99 0.12 5.70 16 13 H 0.08 2.52 7.58 -2.39 -0.02 2.50 16 14 C -0.13 -5.06 8.07 71.98 0.58 -4.48 16 15 C -0.13 -3.80 4.24 -10.37 -0.04 -3.84 16 16 C 0.12 4.34 7.85 83.18 0.65 5.00 16 17 N -0.63 -29.46 2.17 -737.84 -1.60 -31.06 16 18 C -0.21 -11.22 9.59 84.03 0.81 -10.41 16 19 H 0.08 4.05 7.84 -2.91 -0.02 4.03 16 20 C -0.06 -3.28 5.50 84.86 0.47 -2.82 16 21 N -0.95 -55.01 11.81 21.65 0.26 -54.75 16 22 Si 0.96 45.32 29.56 68.60 2.03 47.35 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 24 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 26 C 0.16 6.80 6.23 83.27 0.52 7.32 16 27 C -0.14 -2.64 6.41 30.59 0.20 -2.44 16 28 C 0.51 12.23 8.02 87.90 0.71 12.93 16 29 O -0.58 -18.73 17.59 -3.03 -0.05 -18.79 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 34 H 0.06 0.58 5.65 -2.39 -0.01 0.57 16 35 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.07 1.25 7.92 -2.39 -0.02 1.23 16 38 H 0.10 1.13 8.14 -2.38 -0.02 1.12 16 39 H 0.08 1.51 6.96 -2.39 -0.02 1.49 16 40 H 0.11 1.20 5.90 -2.38 -0.01 1.19 16 41 H 0.41 7.67 8.60 -92.71 -0.80 6.88 16 42 H 0.06 2.70 5.94 -2.39 -0.01 2.69 16 43 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.04 1.80 6.33 -2.39 -0.02 1.79 16 45 H 0.11 2.60 8.14 -2.38 -0.02 2.58 16 46 H 0.05 1.71 8.12 -2.39 -0.02 1.69 16 47 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 49 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.04 1.89 6.19 -2.39 -0.01 1.87 16 51 H 0.13 1.95 8.14 -2.38 -0.02 1.93 16 52 H 0.10 2.14 7.89 -2.39 -0.02 2.12 16 Total: -1.00 -73.13 406.10 3.06 -70.06 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.11 Total: 17.09 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: 6.83 Total: 19.37 kcal Atomic # 7 Polarization: -111.87 SS G_CDS: -5.81 Total: -117.68 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -0.10 Total: -36.19 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -73.13 3.06 -70.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969794885.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.223 kcal (2) G-P(sol) polarization free energy of solvation -73.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds