Wall clock time and date at job start Tue Mar 31 2020 21:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21286 * 119.99919 * 2 1 4 4 N 1.34773 * 120.00337 * 179.97438 * 2 1 3 5 5 C 1.46498 * 120.00328 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47070 * 205.00183 * 5 4 2 7 7 C 1.53002 * 109.47096 * 300.00056 * 6 5 4 8 8 C 1.52998 * 109.47068 * 300.00088 * 7 6 5 9 9 C 1.50704 * 109.47186 * 179.97438 * 8 7 6 10 10 O 1.21281 * 119.99739 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00340 * 179.97438 * 9 8 7 12 12 C 1.46490 * 120.00160 * 180.02562 * 11 9 8 13 13 H 1.09004 * 109.47394 * 324.99907 * 12 11 9 14 14 C 1.53002 * 109.47587 * 85.00163 * 12 11 9 15 15 C 1.53002 * 109.47120 * 205.00547 * 12 11 9 16 16 C 1.53943 * 113.84170 * 81.35116 * 15 12 11 17 17 N 1.47580 * 86.11607 * 90.75462 * 16 15 12 18 18 C 1.36942 * 134.48865 * 204.64321 * 17 16 15 19 19 H 1.08001 * 120.00154 * 173.48015 * 18 17 16 20 20 C 1.38822 * 119.99853 * 353.47866 * 18 17 16 21 21 N 1.31616 * 119.99817 * 5.06680 * 20 18 17 22 22 Si 1.86798 * 119.99687 * 185.06527 * 20 18 17 23 23 H 1.48508 * 109.46852 * 94.98901 * 22 20 18 24 24 H 1.48494 * 109.47029 * 214.98411 * 22 20 18 25 25 H 1.48497 * 109.47536 * 334.99106 * 22 20 18 26 26 C 1.47576 * 91.01740 * 24.63982 * 17 16 15 27 27 C 1.53002 * 109.47234 * 59.99997 * 8 7 6 28 28 C 1.52998 * 109.47057 * 85.00117 * 5 4 2 29 29 H 1.09000 * 109.47126 * 270.00362 * 1 2 3 30 30 H 1.09008 * 109.47068 * 29.99755 * 1 2 3 31 31 H 1.08992 * 109.47416 * 149.99801 * 1 2 3 32 32 H 0.97008 * 119.99559 * 0.02562 * 4 2 1 33 33 H 1.08993 * 109.46998 * 325.00271 * 5 4 2 34 34 H 1.09002 * 109.46868 * 179.97438 * 6 5 4 35 35 H 1.08999 * 109.47130 * 60.00083 * 6 5 4 36 36 H 1.09000 * 109.47138 * 180.02562 * 7 6 5 37 37 H 1.09002 * 109.46892 * 60.00315 * 7 6 5 38 38 H 1.09002 * 109.47450 * 299.99886 * 8 7 6 39 39 H 0.97004 * 119.99535 * 0.02562 * 11 9 8 40 40 H 1.08997 * 109.46950 * 180.02562 * 14 12 11 41 41 H 1.08996 * 109.46742 * 300.00251 * 14 12 11 42 42 H 1.09003 * 109.46487 * 59.99706 * 14 12 11 43 43 H 1.09001 * 112.94465 * 309.65979 * 15 12 11 44 44 H 1.09004 * 113.76985 * 205.05423 * 16 15 12 45 45 H 1.08999 * 113.76761 * 336.44569 * 16 15 12 46 46 H 0.97001 * 119.99640 * 179.97438 * 21 20 18 47 47 H 1.09005 * 113.76862 * 221.05744 * 26 17 16 48 48 H 1.08998 * 113.87265 * 89.67443 * 26 17 16 49 49 H 1.09002 * 109.46868 * 60.00150 * 27 8 7 50 50 H 1.08999 * 109.47130 * 179.97438 * 27 8 7 51 51 H 1.08994 * 109.47268 * 179.97438 * 28 5 4 52 52 H 1.09000 * 109.47176 * 299.99950 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6459 -1.1671 0.0000 6 6 4.1556 -2.4749 -0.6090 7 6 3.6459 -3.6560 0.2193 8 6 4.1565 -3.5293 1.6560 9 6 3.6539 -4.6924 2.4721 10 8 2.9565 -5.5394 1.9553 11 7 3.9803 -4.7918 3.7759 12 6 3.4922 -5.9226 4.5690 13 1 2.4927 -6.1980 4.2325 14 6 4.4358 -7.1141 4.3931 15 6 3.4417 -5.5257 6.0458 16 6 2.1860 -4.7231 6.4318 17 7 1.5685 -6.0281 6.7379 18 6 0.2812 -6.4923 6.7890 19 1 0.0922 -7.5444 6.9426 20 6 -0.7809 -5.6103 6.6435 21 7 -0.5520 -4.3462 6.3573 22 14 -2.5348 -6.2176 6.8539 23 1 -2.9808 -5.9691 8.2485 24 1 -3.4259 -5.4929 5.9127 25 1 -2.5922 -7.6737 6.5681 26 6 2.8955 -6.6320 6.9666 27 6 3.6467 -2.2216 2.2650 28 6 4.1564 -1.0405 1.4367 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8901 -0.5138 31 1 -0.3634 -0.8899 -0.5138 32 1 1.6958 -2.0072 0.0005 33 1 4.0089 -0.3257 -0.5901 34 1 5.2456 -2.4747 -0.6099 35 1 3.7919 -2.5651 -1.6326 36 1 4.0094 -4.5876 -0.2143 37 1 2.5559 -3.6560 0.2196 38 1 5.2465 -3.5294 1.6557 39 1 4.5384 -4.1145 4.1892 40 1 4.0723 -7.9555 4.9829 41 1 4.4718 -7.3967 3.3411 42 1 5.4353 -6.8386 4.7297 43 1 4.3723 -5.0811 6.3984 44 1 2.3231 -4.0862 7.3057 45 1 1.7221 -4.2032 5.5936 46 1 -1.2942 -3.7300 6.2552 47 1 2.9980 -7.6363 6.5554 48 1 3.2426 -6.5570 7.9971 49 1 2.5567 -2.2216 2.2654 50 1 4.0100 -2.1316 3.2887 51 1 5.2463 -1.0409 1.4363 52 1 3.7932 -0.1088 1.8705 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970970602.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:48 Heat of formation + Delta-G solvation = -42.774801 kcal Electronic energy + Delta-G solvation = -30753.647736 eV Core-core repulsion = 26753.860764 eV Total energy + Delta-G solvation = -3999.786973 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.62966 -39.61273 -38.38995 -37.42749 -34.57836 -33.84158 -32.18903 -31.28717 -30.96739 -29.94524 -28.70161 -27.55383 -24.99923 -24.11056 -23.37833 -22.83288 -21.62690 -21.19547 -20.09492 -19.30887 -18.64226 -17.20045 -16.84606 -16.70875 -16.19754 -16.04209 -15.65758 -14.97004 -14.85397 -14.56058 -14.20309 -14.08560 -13.83424 -13.76303 -13.46413 -13.07225 -12.94159 -12.80847 -12.66624 -12.53146 -12.40279 -12.26698 -12.20270 -11.89985 -11.72307 -11.35603 -11.30489 -11.02815 -10.94768 -10.80411 -10.66996 -10.64687 -10.44031 -10.28712 -9.97836 -9.88565 -9.72534 -9.49954 -9.29404 -9.16768 -8.80138 -8.64681 -6.83751 -5.75919 -3.06502 2.54685 2.91836 3.11461 3.40405 3.44582 3.45769 3.47497 4.45554 4.46821 4.48599 4.60771 4.73919 4.91191 4.95473 5.08794 5.12069 5.19291 5.20514 5.25493 5.28024 5.29658 5.32096 5.35331 5.45966 5.55393 5.62003 5.69037 5.75456 5.83563 5.85834 5.90347 5.96815 6.00900 6.03818 6.09934 6.13932 6.20282 6.28758 6.39095 6.46099 6.54925 6.67115 6.75004 6.91644 7.22984 7.32519 7.38511 7.59748 7.83731 8.00431 8.11453 8.54918 9.06911 9.73451 10.63184 11.41706 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010041 B = 0.003446 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2787.781213 B = 8123.390684 C = 9961.561322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.513 3.487 3 O -0.553 6.553 4 N -0.724 5.724 5 C 0.143 3.857 6 C -0.126 4.126 7 C -0.100 4.100 8 C -0.106 4.106 9 C 0.516 3.484 10 O -0.540 6.540 11 N -0.718 5.718 12 C 0.168 3.832 13 H 0.100 0.900 14 C -0.157 4.157 15 C -0.150 4.150 16 C 0.171 3.829 17 N -0.609 5.609 18 C -0.223 4.223 19 H 0.079 0.921 20 C -0.005 4.005 21 N -0.919 5.919 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.125 3.875 27 C -0.110 4.110 28 C -0.128 4.128 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.403 0.597 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.394 0.606 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.049 0.951 43 H 0.063 0.937 44 H 0.026 0.974 45 H 0.070 0.930 46 H 0.252 0.748 47 H 0.046 0.954 48 H 0.034 0.966 49 H 0.071 0.929 50 H 0.070 0.930 51 H 0.073 0.927 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.585 5.137 -12.703 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.300 3.700 3 O -0.431 6.431 4 N -0.377 5.377 5 C 0.038 3.962 6 C -0.164 4.164 7 C -0.138 4.138 8 C -0.127 4.127 9 C 0.301 3.699 10 O -0.417 6.417 11 N -0.367 5.367 12 C 0.064 3.936 13 H 0.118 0.882 14 C -0.215 4.215 15 C -0.170 4.170 16 C 0.045 3.955 17 N -0.336 5.336 18 C -0.351 4.351 19 H 0.097 0.903 20 C -0.202 4.202 21 N -0.566 5.566 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.205 1.205 26 C -0.001 4.001 27 C -0.148 4.148 28 C -0.166 4.166 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.239 0.761 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.113 0.887 39 H 0.228 0.772 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.044 0.956 45 H 0.088 0.912 46 H 0.062 0.938 47 H 0.064 0.936 48 H 0.052 0.948 49 H 0.090 0.910 50 H 0.089 0.911 51 H 0.091 0.909 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.148 5.281 -13.099 18.629 hybrid contribution -0.987 -0.345 0.716 1.267 sum 11.161 4.936 -12.383 17.386 Atomic orbital electron populations 1.21911 0.91774 1.04704 1.05198 1.20818 0.90640 0.83493 0.75038 1.90701 1.70876 1.31480 1.50051 1.46270 1.07262 1.08922 1.75249 1.20956 0.79973 0.98521 0.96714 1.21861 1.01606 0.93576 0.99384 1.21330 1.01470 0.98152 0.92838 1.21362 1.01722 0.93887 0.95724 1.20512 0.80178 0.86778 0.82397 1.90702 1.37580 1.42370 1.71049 1.46068 1.53193 1.27443 1.10045 1.20639 0.99038 0.84656 0.89284 0.88193 1.22132 0.99090 0.98662 1.01660 1.23476 0.98894 1.00728 0.93879 1.22190 0.86390 0.89202 0.97708 1.45964 0.99960 1.07401 1.80227 1.19023 0.80493 0.92650 1.42894 0.90324 1.24778 0.97711 0.95479 1.02214 1.69831 1.30045 1.02910 1.53767 0.86175 0.84772 0.77860 0.77477 1.21712 1.21748 1.20544 1.22591 0.86661 0.95513 0.95374 1.21499 1.02032 0.92185 0.99056 1.21915 1.00840 0.98783 0.95107 0.88517 0.89032 0.90171 0.76131 0.89473 0.90261 0.90998 0.90747 0.91245 0.88747 0.77218 0.91470 0.92835 0.93188 0.91887 0.95645 0.91197 0.93785 0.93599 0.94804 0.91007 0.91095 0.90856 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.49 10.30 36.00 0.37 -1.12 16 2 C 0.51 5.84 7.90 -10.99 -0.09 5.75 16 3 O -0.55 -8.42 16.76 5.55 0.09 -8.33 16 4 N -0.72 -6.94 4.23 -53.81 -0.23 -7.17 16 5 C 0.14 1.29 2.78 -67.93 -0.19 1.10 16 6 C -0.13 -0.94 5.61 -26.73 -0.15 -1.09 16 7 C -0.10 -0.96 4.32 -26.73 -0.12 -1.08 16 8 C -0.11 -1.08 2.53 -91.77 -0.23 -1.31 16 9 C 0.52 7.55 7.12 -10.98 -0.08 7.47 16 10 O -0.54 -10.23 15.64 5.56 0.09 -10.14 16 11 N -0.72 -10.06 4.97 -53.81 -0.27 -10.32 16 12 C 0.17 2.84 2.34 -67.93 -0.16 2.68 16 13 H 0.10 2.22 7.44 -51.93 -0.39 1.83 16 14 C -0.16 -2.28 9.31 37.16 0.35 -1.93 16 15 C -0.15 -2.62 3.53 -89.69 -0.32 -2.94 16 16 C 0.17 3.89 6.97 -2.98 -0.02 3.87 16 17 N -0.61 -15.38 3.55 -177.92 -0.63 -16.01 16 18 C -0.22 -6.28 10.70 -15.05 -0.16 -6.44 16 19 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 20 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 21 N -0.92 -27.23 11.51 55.49 0.64 -26.59 16 22 Si 0.91 22.36 29.56 -169.99 -5.02 17.34 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 26 C 0.13 2.47 8.30 -2.98 -0.02 2.45 16 27 C -0.11 -1.13 4.94 -26.73 -0.13 -1.26 16 28 C -0.13 -1.18 5.60 -26.73 -0.15 -1.33 16 29 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 0.73 8.14 -51.92 -0.42 0.30 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.40 3.46 6.87 -40.82 -0.28 3.18 16 33 H 0.09 0.87 7.58 -51.93 -0.39 0.48 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 37 H 0.07 0.75 6.46 -51.93 -0.34 0.41 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.39 4.43 8.02 -40.82 -0.33 4.10 16 40 H 0.07 0.98 6.58 -51.93 -0.34 0.64 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 1.78 7.31 -51.93 -0.38 1.40 16 46 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 47 H 0.05 0.86 6.56 -51.93 -0.34 0.52 16 48 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.07 0.89 7.60 -51.93 -0.39 0.50 16 50 H 0.07 0.70 7.56 -51.93 -0.39 0.31 16 51 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 52 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 407.37 15.07 6.14 6.14 Total: -1.00 -35.30 407.37 -9.42 -44.72 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -9.04 Total: 5.78 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -1.19 Total: 4.58 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: -0.49 Total: -60.09 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: 0.18 Total: -18.47 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.30 -9.42 -44.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970970602.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.945 kcal (2) G-P(sol) polarization free energy of solvation -35.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds