Wall clock time and date at job start Tue Mar 31 2020 20:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.50990 * 2 1 4 4 C 1.53097 * 109.50674 * 239.91000 * 2 1 3 5 5 N 1.47018 * 109.25911 * 183.21763 * 4 2 1 6 6 C 1.46901 * 110.99885 * 182.39632 * 5 4 2 7 7 C 1.47010 * 110.75119 * 58.61819 * 5 4 2 8 8 C 1.53104 * 109.25923 * 301.38698 * 7 5 4 9 9 H 1.09000 * 109.49828 * 296.90960 * 8 7 5 10 10 C 1.50699 * 109.50372 * 176.78105 * 8 7 5 11 11 O 1.21276 * 120.00003 * 245.20790 * 10 8 7 12 12 N 1.34786 * 120.00047 * 65.21852 * 10 8 7 13 13 C 1.47180 * 135.99413 * 359.62903 * 12 10 8 14 14 C 1.53178 * 87.73637 * 153.42284 * 13 12 10 15 15 C 1.47169 * 135.99630 * 179.97438 * 12 10 8 16 16 C 1.52514 * 114.45155 * 272.10426 * 14 13 12 17 17 C 1.53209 * 109.35449 * 169.97743 * 16 14 13 18 18 C 1.53150 * 109.33781 * 58.89729 * 17 16 14 19 19 N 1.46899 * 109.12479 * 303.48069 * 18 17 16 20 20 C 1.36935 * 120.70377 * 235.38656 * 19 18 17 21 21 H 1.08001 * 120.00138 * 26.79679 * 20 19 18 22 22 C 1.38808 * 119.99787 * 206.80227 * 20 19 18 23 23 N 1.31615 * 120.00001 * 17.05345 * 22 20 19 24 24 Si 1.86801 * 119.99882 * 197.05120 * 22 20 19 25 25 H 1.48498 * 109.46718 * 90.00155 * 24 22 20 26 26 H 1.48502 * 109.47253 * 209.99931 * 24 22 20 27 27 H 1.48491 * 109.47291 * 330.00022 * 24 22 20 28 28 C 1.47142 * 118.59360 * 55.40579 * 19 18 17 29 29 O 1.43009 * 109.25946 * 56.84755 * 8 7 5 30 30 H 1.09002 * 109.47634 * 180.08511 * 1 2 3 31 31 H 1.09003 * 109.47108 * 300.09173 * 1 2 3 32 32 H 1.09003 * 109.46919 * 60.08643 * 1 2 3 33 33 H 1.09005 * 109.50325 * 63.29022 * 4 2 1 34 34 H 1.08991 * 109.51012 * 303.15605 * 4 2 1 35 35 H 1.08996 * 109.47151 * 56.05144 * 6 5 4 36 36 H 1.09003 * 109.46455 * 176.05046 * 6 5 4 37 37 H 1.09004 * 109.46841 * 296.04539 * 6 5 4 38 38 H 1.09002 * 109.50461 * 61.31776 * 7 5 4 39 39 H 1.09001 * 109.50833 * 181.44818 * 7 5 4 40 40 H 1.09005 * 113.48311 * 268.11285 * 13 12 10 41 41 H 1.08995 * 113.49027 * 38.62048 * 13 12 10 42 42 H 1.08997 * 113.48978 * 321.37450 * 15 12 10 43 43 H 1.09002 * 113.48637 * 91.88580 * 15 12 10 44 44 H 1.09000 * 109.48880 * 289.94631 * 16 14 13 45 45 H 1.09002 * 109.48908 * 49.99205 * 16 14 13 46 46 H 1.08995 * 109.49324 * 178.85639 * 17 16 14 47 47 H 1.08994 * 109.49382 * 298.93963 * 17 16 14 48 48 H 1.09000 * 109.53067 * 63.37975 * 18 17 16 49 49 H 1.09002 * 109.52477 * 183.59473 * 18 17 16 50 50 H 0.97008 * 120.00074 * 180.02562 * 23 22 20 51 51 H 1.08999 * 109.64240 * 189.07954 * 28 19 18 52 52 H 1.09001 * 109.63620 * 68.45887 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7235 -1.2486 5 7 3.5093 -0.7881 -1.2047 6 6 4.0446 -1.4261 -2.4148 7 6 3.9639 -1.4885 0.0052 8 6 3.4333 -0.7574 1.2414 9 1 3.8534 0.2478 1.2778 10 6 3.8295 -1.5147 2.4825 11 8 2.9778 -2.0214 3.1816 12 7 5.1305 -1.6288 2.8159 13 6 6.4122 -1.1806 2.2477 14 6 6.9852 -1.2178 3.6678 15 6 5.8929 -2.2613 3.9042 16 6 6.7972 0.0727 4.4585 17 6 7.1791 -0.1685 5.9225 18 6 8.6359 -0.6352 5.9963 19 7 8.7991 -1.8364 5.1665 20 6 9.3073 -2.9908 5.6997 21 1 9.1943 -3.1940 6.7543 22 6 9.9679 -3.8996 4.8846 23 7 10.4029 -3.5261 3.6999 24 14 10.2396 -5.6529 5.4692 25 1 9.0893 -6.4962 5.0558 26 1 11.4872 -6.1878 4.8670 27 1 10.3582 -5.6684 6.9493 28 6 8.4052 -1.7728 3.7502 29 8 2.0075 -0.6768 1.1660 30 1 -0.3634 -1.0276 0.0015 31 1 -0.3633 0.5153 0.8892 32 1 -0.3633 0.5125 -0.8908 33 1 1.7274 -0.1786 -2.1390 34 1 1.6331 -1.7338 -1.2766 35 1 3.6883 -0.8914 -3.2953 36 1 5.1339 -1.3979 -2.3887 37 1 3.7088 -2.4622 -2.4582 38 1 3.5865 -2.5111 -0.0027 39 1 5.0535 -1.5022 0.0302 40 1 6.8678 -1.9084 1.5762 41 1 6.3712 -0.1789 1.8201 42 1 5.4125 -2.1744 4.8788 43 1 6.2089 -3.2798 3.6784 44 1 7.4345 0.8517 4.0399 45 1 5.7547 0.3858 4.4011 46 1 7.0650 0.7578 6.4855 47 1 6.5299 -0.9345 6.3462 48 1 9.2906 0.1543 5.6273 49 1 8.8917 -0.8689 7.0298 50 1 10.8643 -4.1613 3.1301 51 1 8.4335 -2.7725 3.3167 52 1 9.0870 -1.1163 3.2095 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981841981.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:04 Heat of formation + Delta-G solvation = -7.843099 kcal Electronic energy + Delta-G solvation = -31243.923305 eV Core-core repulsion = 27245.651085 eV Total energy + Delta-G solvation = -3998.272220 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.82576 -39.87066 -37.92509 -36.05893 -35.74107 -33.22789 -32.85961 -30.77188 -30.04402 -29.29494 -27.39968 -26.34512 -25.73992 -25.39426 -24.45540 -22.74827 -22.29934 -20.94716 -20.63131 -19.18438 -17.80886 -17.05858 -16.94608 -16.60002 -16.35222 -15.99574 -15.55867 -15.22686 -15.10430 -14.58757 -14.37596 -14.02445 -13.72839 -13.69985 -13.45036 -13.11326 -12.97076 -12.90754 -12.68944 -12.58973 -12.47131 -12.36515 -12.12086 -11.91994 -11.83113 -11.60001 -11.42618 -11.30321 -11.01645 -10.94204 -10.78081 -10.47964 -10.27007 -10.09549 -9.92434 -9.87164 -9.76192 -9.54183 -9.32604 -8.78453 -8.52914 -8.42797 -6.73597 -5.84734 -3.24942 2.63583 2.72059 3.35611 3.43435 3.44206 3.46032 3.71434 4.39671 4.44280 4.51502 4.56715 4.69169 4.73594 4.85592 4.93866 5.06040 5.12850 5.16195 5.22252 5.26117 5.34196 5.36457 5.38961 5.49377 5.51662 5.54392 5.56005 5.61706 5.71187 5.73364 5.79415 5.87130 5.87458 5.98283 6.07159 6.14036 6.23057 6.37581 6.50504 6.51108 6.56101 6.60326 6.72408 6.82752 6.93685 6.96995 7.20409 7.49704 7.75881 7.94706 8.31974 8.37668 9.15551 9.78807 10.35347 11.24244 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016195 B = 0.002987 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.517620 B = 9370.451949 C =10016.787004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.087 3.913 3 H 0.069 0.931 4 C 0.020 3.980 5 N -0.540 5.540 6 C 0.024 3.976 7 C 0.030 3.970 8 C 0.087 3.913 9 H 0.090 0.910 10 C 0.546 3.454 11 O -0.527 6.527 12 N -0.642 5.642 13 C 0.104 3.896 14 C -0.111 4.111 15 C 0.129 3.871 16 C -0.081 4.081 17 C -0.134 4.134 18 C 0.145 3.855 19 N -0.590 5.590 20 C -0.248 4.248 21 H 0.067 0.933 22 C 0.002 3.998 23 N -0.905 5.905 24 Si 0.900 3.100 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.279 1.279 28 C 0.193 3.807 29 O -0.354 6.354 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.045 0.955 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.028 0.972 38 H 0.049 0.951 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.061 0.939 45 H 0.048 0.952 46 H 0.052 0.948 47 H 0.058 0.942 48 H 0.019 0.981 49 H 0.053 0.947 50 H 0.254 0.746 51 H 0.091 0.909 52 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.265 8.818 -11.669 19.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.029 3.971 3 H 0.087 0.913 4 C -0.108 4.108 5 N -0.265 5.265 6 C -0.123 4.123 7 C -0.099 4.099 8 C 0.026 3.974 9 H 0.107 0.893 10 C 0.333 3.667 11 O -0.403 6.403 12 N -0.378 5.378 13 C -0.020 4.020 14 C -0.114 4.114 15 C 0.008 3.992 16 C -0.118 4.118 17 C -0.173 4.173 18 C 0.019 3.981 19 N -0.313 5.313 20 C -0.378 4.378 21 H 0.085 0.915 22 C -0.196 4.196 23 N -0.549 5.549 24 Si 0.730 3.270 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.204 1.204 28 C 0.066 3.934 29 O -0.273 6.273 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.047 0.953 38 H 0.067 0.933 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.105 0.895 44 H 0.080 0.920 45 H 0.067 0.933 46 H 0.071 0.929 47 H 0.077 0.923 48 H 0.037 0.963 49 H 0.072 0.928 50 H 0.064 0.936 51 H 0.109 0.891 52 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -13.800 8.851 -11.291 19.906 hybrid contribution 0.075 -1.719 -0.205 1.733 sum -13.725 7.132 -11.496 19.272 Atomic orbital electron populations 1.21729 0.92359 1.03207 1.02758 1.22230 0.95175 0.95657 0.84043 0.91309 1.22897 0.87798 1.00546 0.99549 1.62218 1.09090 1.52745 1.02443 1.22399 1.01106 0.96995 0.91849 1.22683 1.01705 0.96234 0.89259 1.21782 0.83283 0.99714 0.92660 0.89261 1.19453 0.80816 0.80733 0.85703 1.90711 1.48790 1.48041 1.52763 1.49781 1.03331 1.55295 1.29413 1.23239 0.80799 0.99998 0.97915 1.22615 0.99371 0.96223 0.93178 1.23003 0.88140 0.97622 0.90462 1.21030 0.99836 0.95207 0.95757 1.22018 1.00019 0.99956 0.95337 1.20894 0.92292 0.89562 0.95394 1.44035 1.72674 1.08109 1.06443 1.19200 1.28976 0.95302 0.94304 0.91541 1.24984 0.97710 0.99384 0.97509 1.70009 1.40445 1.33605 1.10875 0.86319 0.77237 0.85145 0.78289 1.21450 1.21802 1.20443 1.20623 0.86039 1.00655 0.86054 1.88118 1.18474 1.78250 1.42425 0.91716 0.91258 0.90813 0.89396 0.93680 0.90991 0.90694 0.95322 0.93317 0.88637 0.89291 0.90782 0.90875 0.89467 0.92036 0.93306 0.92946 0.92304 0.96332 0.92820 0.93626 0.89058 0.95523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.57 37.16 0.36 -0.83 16 2 C 0.09 0.91 3.43 -26.68 -0.09 0.82 16 3 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 4 C 0.02 0.19 4.95 -3.71 -0.02 0.17 16 5 N -0.54 -5.54 4.99 -242.59 -1.21 -6.75 16 6 C 0.02 0.20 9.61 60.07 0.58 0.78 16 7 C 0.03 0.36 4.85 -3.71 -0.02 0.34 16 8 C 0.09 1.21 3.06 -27.83 -0.09 1.12 16 9 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 10 C 0.55 9.36 7.43 -10.98 -0.08 9.28 16 11 O -0.53 -11.27 17.28 -14.27 -0.25 -11.52 16 12 N -0.64 -10.26 3.44 -184.95 -0.64 -10.90 16 13 C 0.10 1.46 6.37 -8.04 -0.05 1.40 16 14 C -0.11 -1.87 0.95 -154.88 -0.15 -2.02 16 15 C 0.13 2.29 7.65 -8.19 -0.06 2.22 16 16 C -0.08 -1.27 5.10 -26.87 -0.14 -1.41 16 17 C -0.13 -2.23 6.02 -26.55 -0.16 -2.39 16 18 C 0.14 2.85 6.45 -3.75 -0.02 2.83 16 19 N -0.59 -13.68 3.01 -172.50 -0.52 -14.20 16 20 C -0.25 -6.44 9.60 -15.06 -0.14 -6.58 16 21 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 22 C 0.00 0.06 4.93 -17.43 -0.09 -0.02 16 23 N -0.90 -24.63 11.16 55.49 0.62 -24.01 16 24 Si 0.90 21.02 29.59 -169.99 -5.03 15.99 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 C 0.19 4.07 4.48 -3.86 -0.02 4.05 16 29 O -0.35 -5.20 9.65 -55.06 -0.53 -5.73 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.10 1.06 6.92 -51.93 -0.36 0.70 16 40 H 0.09 1.19 8.10 -51.93 -0.42 0.77 16 41 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 42 H 0.07 1.37 7.46 -51.93 -0.39 0.98 16 43 H 0.09 1.63 7.96 -51.93 -0.41 1.21 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.05 0.75 7.96 -51.93 -0.41 0.34 16 46 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.06 1.04 7.47 -51.93 -0.39 0.65 16 48 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 50 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 51 H 0.09 2.17 5.93 -51.93 -0.31 1.86 16 52 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 401.02 15.07 6.04 6.04 Total: -1.00 -31.05 401.02 -11.12 -42.16 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -9.41 Total: -0.86 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: -0.19 Total: 9.77 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -1.75 Total: -55.86 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.78 Total: -17.24 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.03 Total: 15.99 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.05 -11.12 -42.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981841981.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.318 kcal (2) G-P(sol) polarization free energy of solvation -31.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds