Wall clock time and date at job start Tue Mar 31 2020 20:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.54433 * 2 1 4 4 C 1.53095 * 109.50860 * 239.88714 * 2 1 3 5 5 N 1.47014 * 109.26132 * 183.21751 * 4 2 1 6 6 C 1.46898 * 111.00235 * 182.39235 * 5 4 2 7 7 C 1.47015 * 110.78980 * 58.59479 * 5 4 2 8 8 C 1.53105 * 109.25467 * 301.45270 * 7 5 4 9 9 H 1.09004 * 109.50545 * 296.82405 * 8 7 5 10 10 C 1.50697 * 109.50792 * 176.73734 * 8 7 5 11 11 O 1.21275 * 120.00279 * 245.08554 * 10 8 7 12 12 N 1.34777 * 119.99652 * 65.08689 * 10 8 7 13 13 C 1.46503 * 119.99969 * 179.97438 * 12 10 8 14 14 C 1.53593 * 112.23646 * 59.65043 * 13 12 10 15 15 C 1.54216 * 106.67467 * 121.16204 * 14 13 12 16 16 C 1.54763 * 104.15742 * 24.94594 * 15 14 13 17 17 C 1.54771 * 103.21490 * 322.18851 * 16 15 14 18 18 H 1.08990 * 111.87313 * 274.14805 * 17 16 15 19 19 N 1.46979 * 108.68988 * 150.19195 * 17 16 15 20 20 C 1.36936 * 125.57578 * 65.88139 * 19 17 16 21 21 H 1.07997 * 120.00282 * 341.50436 * 20 19 17 22 22 C 1.38816 * 120.00303 * 161.50483 * 20 19 17 23 23 N 1.31616 * 120.00072 * 157.65202 * 22 20 19 24 24 Si 1.86800 * 119.99555 * 337.65827 * 22 20 19 25 25 H 1.48509 * 109.47163 * 84.54420 * 24 22 20 26 26 H 1.48506 * 109.47022 * 204.53890 * 24 22 20 27 27 H 1.48495 * 109.47426 * 324.54068 * 24 22 20 28 28 C 1.47370 * 108.84682 * 245.85692 * 19 17 16 29 29 C 1.54870 * 104.90990 * 24.64587 * 28 19 17 30 30 O 1.43010 * 109.29238 * 56.78007 * 8 7 5 31 31 H 1.08999 * 109.47302 * 299.89119 * 1 2 3 32 32 H 1.08998 * 109.47358 * 59.89757 * 1 2 3 33 33 H 1.09005 * 109.46992 * 179.89649 * 1 2 3 34 34 H 1.09003 * 109.50495 * 303.15468 * 4 2 1 35 35 H 1.08999 * 109.50803 * 63.23406 * 4 2 1 36 36 H 1.09001 * 109.47068 * 59.99979 * 6 5 4 37 37 H 1.08995 * 109.47529 * 179.97438 * 6 5 4 38 38 H 1.09002 * 109.47419 * 300.00501 * 6 5 4 39 39 H 1.08996 * 109.54691 * 181.49583 * 7 5 4 40 40 H 1.09004 * 109.47311 * 61.35905 * 7 5 4 41 41 H 0.96997 * 120.00777 * 359.97438 * 12 10 8 42 42 H 1.09001 * 110.01976 * 1.85434 * 14 13 12 43 43 H 1.08999 * 110.05156 * 240.48287 * 14 13 12 44 44 H 1.09005 * 110.49272 * 266.28317 * 15 14 13 45 45 H 1.09001 * 110.49814 * 143.61560 * 15 14 13 46 46 H 1.09005 * 110.66757 * 203.75945 * 16 15 14 47 47 H 1.08991 * 110.81024 * 80.69256 * 16 15 14 48 48 H 0.96998 * 119.99651 * 179.97438 * 23 22 20 49 49 H 1.08998 * 110.37177 * 143.53384 * 28 19 17 50 50 H 1.08998 * 110.37106 * 265.75784 * 28 19 17 51 51 H 1.09004 * 110.96939 * 81.10022 * 29 28 19 52 52 H 1.09009 * 110.96620 * 204.85751 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0412 -0.7240 -1.2483 5 7 3.5093 -0.7886 -1.2044 6 6 4.0446 -1.4271 -2.4142 7 6 3.9649 -1.4879 0.0059 8 6 3.4334 -0.7568 1.2417 9 1 3.8533 0.2484 1.2786 10 6 3.8296 -1.5135 2.4832 11 8 2.9779 -2.0186 3.1833 12 7 5.1307 -1.6289 2.8156 13 6 5.5159 -2.3640 4.0228 14 6 5.0525 -3.8279 3.9846 15 6 6.3201 -4.6968 4.1129 16 6 7.3331 -3.7829 4.8435 17 6 7.0524 -2.3872 4.2364 18 1 7.6076 -2.2273 3.3122 19 7 7.3634 -1.3639 5.2445 20 6 8.6086 -1.0909 5.7447 21 1 9.4029 -1.8152 5.6412 22 6 8.8500 0.1171 6.3847 23 7 9.8525 0.2247 7.2307 24 14 7.7519 1.5896 6.0453 25 1 6.5496 1.5213 6.9143 26 1 8.4991 2.8407 6.3315 27 1 7.3341 1.5776 4.6204 28 6 6.1161 -0.6794 5.6285 29 6 4.9913 -1.6985 5.3209 30 8 2.0076 -0.6762 1.1662 31 1 -0.3634 0.5121 0.8909 32 1 -0.3634 0.5154 -0.8890 33 1 -0.3633 -1.0277 -0.0019 34 1 1.6331 -1.7344 -1.2758 35 1 1.7266 -0.1801 -2.1390 36 1 3.7462 -0.8522 -3.2908 37 1 5.1325 -1.4615 -2.3558 38 1 3.6524 -2.4409 -2.4939 39 1 5.0545 -1.5008 0.0312 40 1 3.5881 -2.5107 -0.0019 41 1 5.8120 -1.2252 2.2555 42 1 4.5514 -4.0361 3.0393 43 1 4.3773 -4.0279 4.8166 44 1 6.6958 -4.9715 3.1272 45 1 6.1136 -5.5880 4.7056 46 1 8.3557 -4.0959 4.6320 47 1 7.1474 -3.7799 5.9174 48 1 10.0213 1.0689 7.6777 49 1 6.1281 -0.4368 6.6911 50 1 5.9814 0.2249 5.0351 51 1 4.8979 -2.4304 6.1233 52 1 4.0426 -1.1911 5.1454 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991362529.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:23 Heat of formation + Delta-G solvation = -39.745956 kcal Electronic energy + Delta-G solvation = -31685.387326 eV Core-core repulsion = 27685.731694 eV Total energy + Delta-G solvation = -3999.655632 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.75070 -39.78349 -38.03861 -36.03745 -34.45026 -33.71328 -33.08939 -31.84764 -30.34493 -29.35640 -27.44653 -27.22640 -26.45143 -25.04729 -23.59574 -22.81229 -21.69108 -20.80787 -20.57276 -19.56671 -19.01192 -17.35073 -17.07263 -16.75189 -16.27380 -15.96432 -15.67587 -15.46333 -15.21079 -14.76123 -14.69843 -14.24424 -13.89363 -13.62839 -13.50475 -13.15700 -13.04033 -12.96631 -12.70840 -12.65086 -12.52629 -12.17963 -12.06979 -11.98909 -11.84867 -11.54193 -11.44741 -11.38575 -11.00033 -10.97465 -10.78770 -10.66356 -10.24879 -10.19525 -10.09072 -9.94929 -9.90298 -9.49686 -9.42104 -8.84312 -8.80748 -8.64254 -7.06419 -5.95430 -3.26018 2.62064 2.76454 3.36117 3.39085 3.48194 3.49490 3.79719 4.38461 4.49500 4.53132 4.54832 4.65429 4.76328 4.82709 4.89085 4.98186 5.00744 5.06861 5.10706 5.13338 5.20221 5.21595 5.29710 5.41879 5.45518 5.46833 5.48769 5.57719 5.67835 5.69330 5.73333 5.84826 5.93529 5.97747 6.05085 6.11550 6.25193 6.27671 6.39265 6.44970 6.47323 6.49634 6.61427 6.66825 6.74977 6.82336 6.92101 7.01047 7.62416 7.70642 8.30918 8.32510 8.82444 9.68578 10.16579 11.20617 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013777 B = 0.003527 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.948172 B = 7935.837429 C = 8569.551366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.087 3.913 3 H 0.069 0.931 4 C 0.021 3.979 5 N -0.541 5.541 6 C 0.025 3.975 7 C 0.030 3.970 8 C 0.078 3.922 9 H 0.092 0.908 10 C 0.522 3.478 11 O -0.513 6.513 12 N -0.705 5.705 13 C 0.162 3.838 14 C -0.110 4.110 15 C -0.124 4.124 16 C -0.127 4.127 17 C 0.163 3.837 18 H 0.057 0.943 19 N -0.602 5.602 20 C -0.239 4.239 21 H 0.093 0.907 22 C 0.023 3.977 23 N -0.908 5.908 24 Si 0.882 3.118 25 H -0.286 1.286 26 H -0.304 1.304 27 H -0.278 1.278 28 C 0.110 3.890 29 C -0.129 4.129 30 O -0.352 6.352 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.045 0.955 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.028 0.972 39 H 0.094 0.906 40 H 0.050 0.950 41 H 0.401 0.599 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.076 0.924 48 H 0.263 0.737 49 H 0.060 0.940 50 H 0.024 0.976 51 H 0.079 0.921 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.705 -4.342 -18.724 24.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 H 0.087 0.913 4 C -0.107 4.107 5 N -0.266 5.266 6 C -0.123 4.123 7 C -0.099 4.099 8 C 0.016 3.984 9 H 0.109 0.891 10 C 0.305 3.695 11 O -0.387 6.387 12 N -0.357 5.357 13 C 0.076 3.924 14 C -0.149 4.149 15 C -0.163 4.163 16 C -0.167 4.167 17 C 0.055 3.945 18 H 0.074 0.926 19 N -0.327 5.327 20 C -0.366 4.366 21 H 0.111 0.889 22 C -0.175 4.175 23 N -0.551 5.551 24 Si 0.713 3.287 25 H -0.213 1.213 26 H -0.232 1.232 27 H -0.204 1.204 28 C -0.015 4.015 29 C -0.168 4.168 30 O -0.270 6.270 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.047 0.953 39 H 0.112 0.888 40 H 0.068 0.932 41 H 0.236 0.764 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.095 0.905 48 H 0.073 0.927 49 H 0.078 0.922 50 H 0.041 0.959 51 H 0.098 0.902 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.082 -4.167 -17.902 23.776 hybrid contribution -0.262 0.577 -0.762 0.991 sum -15.344 -3.590 -18.663 24.426 Atomic orbital electron populations 1.21726 0.92323 1.03182 1.02820 1.22235 0.95206 0.95714 0.83997 0.91285 1.22891 0.87635 1.00550 0.99621 1.62188 1.09208 1.52776 1.02408 1.22394 1.00867 0.97067 0.91996 1.22689 1.01424 0.96356 0.89416 1.21938 0.83713 0.99924 0.92840 0.89066 1.19899 0.82906 0.80675 0.85981 1.90712 1.49677 1.46195 1.52079 1.45857 1.06744 1.56158 1.26967 1.21671 0.95475 0.91116 0.84124 1.22252 0.97491 0.92874 1.02238 1.22371 0.95644 0.98046 1.00193 1.22878 0.98190 0.94897 1.00732 1.21844 0.89746 0.90341 0.92558 0.92561 1.44816 1.03202 1.40506 1.44139 1.18607 0.86421 1.00399 1.31196 0.88941 1.24988 0.96663 0.97555 0.98330 1.69839 1.32070 1.25926 1.27296 0.86998 0.79608 0.83500 0.78599 1.21296 1.23173 1.20424 1.21988 0.86060 0.94191 0.99211 1.23101 0.98444 0.99393 0.95852 1.88125 1.18250 1.78233 1.42374 0.91213 0.90831 0.91720 0.93651 0.89411 0.90959 0.90805 0.95331 0.88800 0.93151 0.76424 0.92114 0.90966 0.92193 0.91983 0.91834 0.90542 0.92729 0.92193 0.95879 0.90204 0.90809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.57 37.16 0.36 -0.78 16 2 C 0.09 0.86 3.43 -26.68 -0.09 0.77 16 3 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 4 C 0.02 0.18 4.95 -3.71 -0.02 0.16 16 5 N -0.54 -5.03 4.98 -242.59 -1.21 -6.24 16 6 C 0.02 0.18 9.60 60.06 0.58 0.75 16 7 C 0.03 0.31 4.90 -3.71 -0.02 0.29 16 8 C 0.08 0.98 3.21 -27.83 -0.09 0.89 16 9 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 10 C 0.52 7.90 6.35 -10.99 -0.07 7.83 16 11 O -0.51 -9.51 14.39 -14.27 -0.21 -9.71 16 12 N -0.70 -10.27 5.21 -45.29 -0.24 -10.50 16 13 C 0.16 2.68 0.74 -129.31 -0.10 2.58 16 14 C -0.11 -1.64 5.22 -25.79 -0.13 -1.77 16 15 C -0.12 -1.71 6.84 -25.17 -0.17 -1.88 16 16 C -0.13 -2.15 6.22 -24.87 -0.15 -2.30 16 17 C 0.16 3.00 3.65 -65.60 -0.24 2.76 16 18 H 0.06 1.02 8.01 -51.93 -0.42 0.60 16 19 N -0.60 -13.87 2.84 -161.14 -0.46 -14.33 16 20 C -0.24 -6.53 10.31 -15.06 -0.16 -6.68 16 21 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 22 C 0.02 0.67 5.43 -17.43 -0.09 0.57 16 23 N -0.91 -27.66 13.97 55.49 0.78 -26.89 16 24 Si 0.88 22.57 24.26 -169.99 -4.12 18.44 16 25 H -0.29 -7.18 6.47 56.52 0.37 -6.82 16 26 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 27 H -0.28 -6.96 6.65 56.52 0.38 -6.58 16 28 C 0.11 2.43 4.68 -2.58 -0.01 2.42 16 29 C -0.13 -2.39 5.78 -24.67 -0.14 -2.53 16 30 O -0.35 -4.81 9.65 -55.06 -0.53 -5.34 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.09 0.83 8.01 -51.93 -0.42 0.42 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.40 5.09 8.39 -40.82 -0.34 4.75 16 42 H 0.06 0.90 7.40 -51.93 -0.38 0.52 16 43 H 0.07 1.12 7.37 -51.93 -0.38 0.73 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 47 H 0.08 1.43 8.09 -51.93 -0.42 1.01 16 48 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 49 H 0.06 1.43 6.57 -51.93 -0.34 1.09 16 50 H 0.02 0.54 5.61 -51.93 -0.29 0.25 16 51 H 0.08 1.44 7.62 -51.93 -0.40 1.04 16 52 H 0.07 1.39 6.85 -51.92 -0.36 1.04 16 LS Contribution 390.68 15.07 5.89 5.89 Total: -1.00 -32.92 390.68 -9.94 -42.86 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -9.28 Total: 2.75 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -0.56 Total: 3.07 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -1.13 Total: -57.96 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.74 Total: -15.05 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.12 Total: 18.44 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.92 -9.94 -42.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991362529.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.117 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds