Wall clock time and date at job start Tue Mar 31 2020 20:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.54433 * 2 1 4 4 C 1.53095 * 109.50860 * 239.88714 * 2 1 3 5 5 N 1.47014 * 109.26132 * 183.21751 * 4 2 1 6 6 C 1.46898 * 111.00235 * 182.39235 * 5 4 2 7 7 C 1.47015 * 110.78980 * 58.59479 * 5 4 2 8 8 C 1.53105 * 109.25467 * 301.45270 * 7 5 4 9 9 H 1.09004 * 109.50545 * 296.82405 * 8 7 5 10 10 C 1.50697 * 109.50792 * 176.73734 * 8 7 5 11 11 O 1.21275 * 120.00279 * 245.08554 * 10 8 7 12 12 N 1.34777 * 119.99652 * 65.08689 * 10 8 7 13 13 C 1.46503 * 119.99969 * 179.97438 * 12 10 8 14 14 C 1.53593 * 112.23646 * 59.65043 * 13 12 10 15 15 C 1.54216 * 106.67467 * 121.16204 * 14 13 12 16 16 C 1.54763 * 104.15742 * 24.94594 * 15 14 13 17 17 C 1.54771 * 103.21490 * 322.18851 * 16 15 14 18 18 H 1.08990 * 111.87313 * 274.14805 * 17 16 15 19 19 N 1.46979 * 108.68988 * 150.19195 * 17 16 15 20 20 C 1.36936 * 125.57578 * 65.88139 * 19 17 16 21 21 H 1.07997 * 120.00282 * 341.50436 * 20 19 17 22 22 C 1.38816 * 120.00303 * 161.50483 * 20 19 17 23 23 N 1.31616 * 120.00072 * 157.65202 * 22 20 19 24 24 Si 1.86800 * 119.99555 * 337.65827 * 22 20 19 25 25 H 1.48509 * 109.47163 * 84.54420 * 24 22 20 26 26 H 1.48506 * 109.47022 * 204.53890 * 24 22 20 27 27 H 1.48495 * 109.47426 * 324.54068 * 24 22 20 28 28 C 1.47370 * 108.84682 * 245.85692 * 19 17 16 29 29 C 1.54870 * 104.90990 * 24.64587 * 28 19 17 30 30 O 1.43010 * 109.29238 * 56.78007 * 8 7 5 31 31 H 1.08999 * 109.47302 * 299.89119 * 1 2 3 32 32 H 1.08998 * 109.47358 * 59.89757 * 1 2 3 33 33 H 1.09005 * 109.46992 * 179.89649 * 1 2 3 34 34 H 1.09003 * 109.50495 * 303.15468 * 4 2 1 35 35 H 1.08999 * 109.50803 * 63.23406 * 4 2 1 36 36 H 1.09001 * 109.47068 * 59.99979 * 6 5 4 37 37 H 1.08995 * 109.47529 * 179.97438 * 6 5 4 38 38 H 1.09002 * 109.47419 * 300.00501 * 6 5 4 39 39 H 1.08996 * 109.54691 * 181.49583 * 7 5 4 40 40 H 1.09004 * 109.47311 * 61.35905 * 7 5 4 41 41 H 0.96997 * 120.00777 * 359.97438 * 12 10 8 42 42 H 1.09001 * 110.01976 * 1.85434 * 14 13 12 43 43 H 1.08999 * 110.05156 * 240.48287 * 14 13 12 44 44 H 1.09005 * 110.49272 * 266.28317 * 15 14 13 45 45 H 1.09001 * 110.49814 * 143.61560 * 15 14 13 46 46 H 1.09005 * 110.66757 * 203.75945 * 16 15 14 47 47 H 1.08991 * 110.81024 * 80.69256 * 16 15 14 48 48 H 0.96998 * 119.99651 * 179.97438 * 23 22 20 49 49 H 1.08998 * 110.37177 * 143.53384 * 28 19 17 50 50 H 1.08998 * 110.37106 * 265.75784 * 28 19 17 51 51 H 1.09004 * 110.96939 * 81.10022 * 29 28 19 52 52 H 1.09009 * 110.96620 * 204.85751 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0412 -0.7240 -1.2483 5 7 3.5093 -0.7886 -1.2044 6 6 4.0446 -1.4271 -2.4142 7 6 3.9649 -1.4879 0.0059 8 6 3.4334 -0.7568 1.2417 9 1 3.8533 0.2484 1.2786 10 6 3.8296 -1.5135 2.4832 11 8 2.9779 -2.0186 3.1833 12 7 5.1307 -1.6289 2.8156 13 6 5.5159 -2.3640 4.0228 14 6 5.0525 -3.8279 3.9846 15 6 6.3201 -4.6968 4.1129 16 6 7.3331 -3.7829 4.8435 17 6 7.0524 -2.3872 4.2364 18 1 7.6076 -2.2273 3.3122 19 7 7.3634 -1.3639 5.2445 20 6 8.6086 -1.0909 5.7447 21 1 9.4029 -1.8152 5.6412 22 6 8.8500 0.1171 6.3847 23 7 9.8525 0.2247 7.2307 24 14 7.7519 1.5896 6.0453 25 1 6.5496 1.5213 6.9143 26 1 8.4991 2.8407 6.3315 27 1 7.3341 1.5776 4.6204 28 6 6.1161 -0.6794 5.6285 29 6 4.9913 -1.6985 5.3209 30 8 2.0076 -0.6762 1.1662 31 1 -0.3634 0.5121 0.8909 32 1 -0.3634 0.5154 -0.8890 33 1 -0.3633 -1.0277 -0.0019 34 1 1.6331 -1.7344 -1.2758 35 1 1.7266 -0.1801 -2.1390 36 1 3.7462 -0.8522 -3.2908 37 1 5.1325 -1.4615 -2.3558 38 1 3.6524 -2.4409 -2.4939 39 1 5.0545 -1.5008 0.0312 40 1 3.5881 -2.5107 -0.0019 41 1 5.8120 -1.2252 2.2555 42 1 4.5514 -4.0361 3.0393 43 1 4.3773 -4.0279 4.8166 44 1 6.6958 -4.9715 3.1272 45 1 6.1136 -5.5880 4.7056 46 1 8.3557 -4.0959 4.6320 47 1 7.1474 -3.7799 5.9174 48 1 10.0213 1.0689 7.6777 49 1 6.1281 -0.4368 6.6911 50 1 5.9814 0.2249 5.0351 51 1 4.8979 -2.4304 6.1233 52 1 4.0426 -1.1911 5.1454 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991362529.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:22 Heat of formation + Delta-G solvation = -63.524618 kcal Electronic energy + Delta-G solvation = -31686.418446 eV Core-core repulsion = 27685.731694 eV Total energy + Delta-G solvation = -4000.686752 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.94023 -40.86099 -39.30178 -36.81735 -36.14168 -34.93096 -34.03128 -33.73555 -31.82607 -30.35868 -28.83598 -28.07456 -27.74498 -25.99822 -25.44884 -23.50948 -23.16133 -21.99155 -21.59253 -20.93816 -20.33727 -18.97470 -18.41471 -17.81961 -17.23428 -17.10620 -16.96003 -16.75720 -16.28142 -16.16229 -15.76301 -15.49857 -15.06779 -15.02200 -14.80881 -14.62649 -14.44765 -14.00283 -13.75422 -13.65323 -13.38170 -13.33091 -13.26763 -13.09144 -12.95768 -12.84490 -12.72821 -12.67932 -12.41511 -12.23385 -12.01493 -11.92148 -11.87216 -11.76779 -11.69172 -11.53417 -11.25954 -10.77897 -10.76558 -10.66576 -10.08185 -9.52387 -9.04514 -8.16534 -5.42169 1.30308 1.36584 1.44368 1.46474 1.69757 2.41567 2.66738 2.87470 3.02544 3.21439 3.37313 3.57706 3.67562 3.72012 3.77000 3.86669 3.92067 4.06697 4.18580 4.20520 4.25025 4.31517 4.37560 4.41683 4.49593 4.55728 4.56113 4.58006 4.66604 4.69882 4.72329 4.77549 4.81187 4.83238 4.84147 4.99046 5.00128 5.02274 5.05649 5.19012 5.22997 5.23289 5.31863 5.54539 5.58758 5.70620 5.76426 5.87745 6.03596 6.13789 6.48814 6.75689 7.15172 7.55435 8.11697 9.03221 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013777 B = 0.003527 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.948172 B = 7935.837429 C = 8569.551366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.079 3.921 3 H 0.071 0.929 4 C 0.024 3.976 5 N -0.549 5.549 6 C 0.024 3.976 7 C 0.037 3.963 8 C 0.081 3.919 9 H 0.098 0.902 10 C 0.524 3.476 11 O -0.549 6.549 12 N -0.698 5.698 13 C 0.171 3.829 14 C -0.103 4.103 15 C -0.109 4.109 16 C -0.125 4.125 17 C 0.156 3.844 18 H 0.069 0.931 19 N -0.614 5.614 20 C -0.219 4.219 21 H 0.070 0.930 22 C -0.034 4.034 23 N -0.954 5.954 24 Si 0.937 3.063 25 H -0.283 1.283 26 H -0.310 1.310 27 H -0.267 1.267 28 C 0.109 3.891 29 C -0.120 4.120 30 O -0.382 6.382 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.058 0.942 34 H 0.039 0.961 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.029 0.971 39 H 0.109 0.891 40 H 0.040 0.960 41 H 0.412 0.588 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.063 0.937 47 H 0.053 0.947 48 H 0.261 0.739 49 H 0.036 0.964 50 H 0.020 0.980 51 H 0.083 0.917 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.169 -4.865 -21.706 27.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.021 3.979 3 H 0.089 0.911 4 C -0.104 4.104 5 N -0.273 5.273 6 C -0.123 4.123 7 C -0.092 4.092 8 C 0.020 3.980 9 H 0.116 0.884 10 C 0.309 3.691 11 O -0.426 6.426 12 N -0.351 5.351 13 C 0.084 3.916 14 C -0.142 4.142 15 C -0.147 4.147 16 C -0.165 4.165 17 C 0.050 3.950 18 H 0.087 0.913 19 N -0.339 5.339 20 C -0.347 4.347 21 H 0.087 0.913 22 C -0.228 4.228 23 N -0.602 5.602 24 Si 0.767 3.233 25 H -0.210 1.210 26 H -0.239 1.239 27 H -0.192 1.192 28 C -0.016 4.016 29 C -0.159 4.159 30 O -0.301 6.301 31 H 0.079 0.921 32 H 0.120 0.880 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.129 0.871 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.047 0.953 39 H 0.127 0.873 40 H 0.059 0.941 41 H 0.249 0.751 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.101 0.899 45 H 0.097 0.903 46 H 0.081 0.919 47 H 0.071 0.929 48 H 0.070 0.930 49 H 0.055 0.945 50 H 0.037 0.963 51 H 0.101 0.899 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.570 -4.705 -20.945 27.118 hybrid contribution 0.170 0.680 0.149 0.716 sum -16.400 -4.025 -20.797 26.790 Atomic orbital electron populations 1.21749 0.91097 1.03073 1.03753 1.22497 0.96232 0.95636 0.83485 0.91102 1.22899 0.87348 1.00343 0.99771 1.62225 1.09582 1.52880 1.02655 1.22464 1.01201 0.97220 0.91452 1.22611 1.02120 0.95446 0.89009 1.21894 0.83773 0.99959 0.92409 0.88396 1.20355 0.82375 0.80025 0.86339 1.90693 1.50609 1.47836 1.53423 1.45771 1.07154 1.55900 1.26309 1.21504 0.93761 0.92300 0.83987 1.22188 0.97966 0.91594 1.02412 1.22303 0.93618 0.97560 1.01179 1.22769 0.99319 0.94778 0.99631 1.22101 0.91340 0.89585 0.91966 0.91306 1.44853 1.02171 1.41358 1.45533 1.18557 0.87389 0.99312 1.29476 0.91272 1.25526 0.98337 0.99987 0.98958 1.69950 1.34629 1.26302 1.29280 0.86107 0.77995 0.80314 0.78917 1.20995 1.23886 1.19199 1.21961 0.86888 0.95029 0.97683 1.23016 0.96974 0.98617 0.97316 1.88091 1.18694 1.78931 1.44365 0.92131 0.88026 0.92320 0.94281 0.87096 0.89554 0.90218 0.95250 0.87300 0.94134 0.75142 0.91427 0.91469 0.89940 0.90255 0.91858 0.92851 0.93040 0.94529 0.96282 0.89867 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.57 71.98 0.69 -1.29 16 2 C 0.08 1.42 3.43 30.62 0.10 1.53 16 3 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 4 C 0.02 0.36 4.95 86.31 0.43 0.79 16 5 N -0.55 -8.70 4.98 -921.43 -4.59 -13.29 16 6 C 0.02 0.27 9.60 127.69 1.23 1.50 16 7 C 0.04 0.67 4.90 86.32 0.42 1.10 16 8 C 0.08 1.90 3.21 29.88 0.10 2.00 16 9 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 10 C 0.52 15.04 6.35 87.66 0.56 15.59 16 11 O -0.55 -19.81 14.39 15.95 0.23 -19.58 16 12 N -0.70 -18.89 5.21 -415.61 -2.16 -21.05 16 13 C 0.17 5.35 0.74 5.23 0.00 5.35 16 14 C -0.10 -2.82 5.22 31.21 0.16 -2.66 16 15 C -0.11 -2.65 6.84 31.61 0.22 -2.44 16 16 C -0.13 -4.05 6.22 31.80 0.20 -3.86 16 17 C 0.16 5.53 3.65 46.24 0.17 5.70 16 18 H 0.07 2.32 8.01 -2.39 -0.02 2.30 16 19 N -0.61 -28.13 2.84 -663.71 -1.89 -30.01 16 20 C -0.22 -12.09 10.31 84.03 0.87 -11.23 16 21 H 0.07 4.09 8.06 -2.91 -0.02 4.06 16 22 C -0.03 -1.96 5.43 84.86 0.46 -1.50 16 23 N -0.95 -59.84 13.97 21.65 0.30 -59.53 16 24 Si 0.94 47.27 24.26 68.60 1.66 48.94 16 25 H -0.28 -14.00 6.47 99.48 0.64 -13.35 16 26 H -0.31 -15.88 7.11 99.48 0.71 -15.17 16 27 H -0.27 -12.78 6.65 99.48 0.66 -12.12 16 28 C 0.11 4.77 4.68 86.85 0.41 5.18 16 29 C -0.12 -4.36 5.78 31.93 0.18 -4.17 16 30 O -0.38 -10.01 9.65 -130.02 -1.25 -11.27 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.11 1.61 8.01 -2.39 -0.02 1.59 16 40 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.41 9.40 8.39 -92.71 -0.78 8.62 16 42 H 0.07 1.80 7.40 -2.39 -0.02 1.79 16 43 H 0.07 1.94 7.37 -2.39 -0.02 1.92 16 44 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 45 H 0.08 1.72 8.14 -2.39 -0.02 1.71 16 46 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 47 H 0.05 1.97 8.09 -2.39 -0.02 1.95 16 48 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 49 H 0.04 1.76 6.57 -2.39 -0.02 1.74 16 50 H 0.02 0.87 5.61 -2.39 -0.01 0.86 16 51 H 0.08 2.95 7.62 -2.38 -0.02 2.93 16 52 H 0.07 2.68 6.85 -2.38 -0.02 2.67 16 Total: -1.00 -72.31 390.68 -1.50 -73.81 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: 0.01 Total: 20.39 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 6.19 Total: 11.60 kcal Atomic # 7 Polarization: -115.55 SS G_CDS: -8.34 Total: -123.89 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -1.03 Total: -30.85 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 1.66 Total: 48.94 kcal Total: -72.31 -1.50 -73.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991362529.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.284 kcal (2) G-P(sol) polarization free energy of solvation -72.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds