Wall clock time and date at job start Tue Mar 31 2020 20:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.50113 * 2 1 4 4 C 1.53095 * 109.50994 * 239.91100 * 2 1 3 5 5 N 1.47010 * 109.25707 * 183.17281 * 4 2 1 6 6 C 1.46903 * 111.00370 * 182.38835 * 5 4 2 7 7 C 1.47014 * 110.75558 * 58.61389 * 5 4 2 8 8 C 1.53105 * 109.25822 * 301.38301 * 7 5 4 9 9 H 1.08996 * 109.50540 * 296.87332 * 8 7 5 10 10 C 1.50697 * 109.50782 * 176.77979 * 8 7 5 11 11 O 1.21280 * 120.00081 * 245.08899 * 10 8 7 12 12 N 1.34779 * 119.99834 * 65.08822 * 10 8 7 13 13 C 1.46502 * 119.99838 * 179.97438 * 12 10 8 14 14 C 1.51222 * 111.46185 * 68.11418 * 13 12 10 15 15 C 1.55693 * 104.60664 * 84.03586 * 14 13 12 16 16 C 1.56287 * 105.93537 * 7.25391 * 15 14 13 17 17 C 1.50524 * 101.75565 * 24.25696 * 16 15 14 18 18 H 1.08998 * 108.14831 * 66.26870 * 17 16 15 19 19 N 1.42707 * 128.13968 * 198.70184 * 17 16 15 20 20 C 1.36946 * 127.10286 * 331.73834 * 19 17 16 21 21 H 1.07994 * 119.99865 * 0.02562 * 20 19 17 22 22 C 1.38808 * 119.99773 * 180.02562 * 20 19 17 23 23 N 1.31620 * 120.00392 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99952 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47055 * 59.99669 * 24 22 20 26 26 H 1.48504 * 109.47179 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.46646 * 299.99787 * 24 22 20 28 28 C 1.49286 * 105.79249 * 151.70563 * 19 17 16 29 29 C 1.52126 * 111.08434 * 288.29996 * 13 12 10 30 30 O 1.43017 * 109.29246 * 56.82659 * 8 7 5 31 31 H 1.08997 * 109.46747 * 180.09004 * 1 2 3 32 32 H 1.08994 * 109.47277 * 300.09144 * 1 2 3 33 33 H 1.08997 * 109.46948 * 60.09446 * 1 2 3 34 34 H 1.08995 * 109.50944 * 63.23775 * 4 2 1 35 35 H 1.09008 * 109.50468 * 303.10321 * 4 2 1 36 36 H 1.09005 * 109.47049 * 292.41591 * 6 5 4 37 37 H 1.09005 * 109.46497 * 52.40767 * 6 5 4 38 38 H 1.08990 * 109.47588 * 172.40937 * 6 5 4 39 39 H 1.08995 * 109.51099 * 181.44924 * 7 5 4 40 40 H 1.08999 * 109.54495 * 61.33887 * 7 5 4 41 41 H 0.97002 * 120.00025 * 359.97438 * 12 10 8 42 42 H 1.08997 * 110.40913 * 325.25746 * 14 13 12 43 43 H 1.08996 * 110.40760 * 202.81737 * 14 13 12 44 44 H 1.09003 * 110.16140 * 248.13706 * 15 14 13 45 45 H 1.09004 * 110.15742 * 126.36876 * 15 14 13 46 46 H 1.08997 * 110.96703 * 142.37474 * 16 15 14 47 47 H 1.09001 * 110.96807 * 266.10008 * 16 15 14 48 48 H 0.96996 * 120.00278 * 179.97438 * 23 22 20 49 49 H 1.08999 * 110.05494 * 110.60086 * 28 19 17 50 50 H 1.09009 * 110.04748 * 232.07482 * 28 19 17 51 51 H 1.09004 * 111.14989 * 168.15962 * 29 13 12 52 52 H 1.08998 * 111.15216 * 43.93967 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2486 5 7 3.5094 -0.7870 -1.2051 6 6 4.0449 -1.4251 -2.4151 7 6 3.9649 -1.4867 0.0050 8 6 3.4344 -0.7555 1.2410 9 1 3.8542 0.2497 1.2774 10 6 3.8315 -1.5121 2.4824 11 8 2.9802 -2.0172 3.1831 12 7 5.1328 -1.6274 2.8138 13 6 5.5188 -2.3624 4.0209 14 6 5.2393 -3.8420 3.8809 15 6 6.4838 -4.4079 3.1358 16 6 7.5073 -3.2296 3.0537 17 6 7.0816 -2.3722 4.2154 18 1 7.2748 -2.9255 5.1345 19 7 7.3812 -0.9972 4.4523 20 6 8.4859 -0.3075 4.0287 21 1 9.2457 -0.8091 3.4478 22 6 8.6289 1.0362 4.3460 23 7 7.7027 1.6477 5.0535 24 14 10.1354 1.9773 3.7675 25 1 10.1963 1.9504 2.2841 26 1 10.0496 3.3843 4.2346 27 1 11.3580 1.3449 4.3247 28 6 6.2414 -0.4658 5.2567 29 6 5.1516 -1.5851 5.2759 30 8 2.0084 -0.6750 1.1666 31 1 -0.3633 -1.0277 0.0016 32 1 -0.3633 0.5152 0.8891 33 1 -0.3633 0.5124 -0.8908 34 1 1.7268 -0.1792 -2.1390 35 1 1.6339 -1.7342 -1.2761 36 1 3.7637 -2.4782 -2.4254 37 1 3.6367 -0.9314 -3.2971 38 1 5.1314 -1.3391 -2.4208 39 1 5.0545 -1.4997 0.0296 40 1 3.5889 -2.5098 -0.0020 41 1 5.8137 -1.2237 2.2532 42 1 4.3371 -4.0042 3.2912 43 1 5.1412 -4.3049 4.8628 44 1 6.2055 -4.7342 2.1337 45 1 6.9118 -5.2388 3.6968 46 1 8.5275 -3.5892 3.1874 47 1 7.4061 -2.6900 2.1121 48 1 7.8028 2.5866 5.2756 49 1 6.5706 -0.2472 6.2725 50 1 5.8431 0.4355 4.7904 51 1 5.2436 -2.2082 6.1655 52 1 4.1507 -1.1609 5.1971 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991362533.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:28 Heat of formation + Delta-G solvation = -29.376879 kcal Electronic energy + Delta-G solvation = -32135.539914 eV Core-core repulsion = 28136.333919 eV Total energy + Delta-G solvation = -3999.205995 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.66844 -39.75476 -37.76623 -35.82514 -34.43308 -33.27423 -32.77954 -31.70000 -30.10334 -29.10285 -27.26100 -26.95132 -25.93082 -24.90860 -24.03150 -22.62348 -21.10978 -20.49334 -20.39227 -19.59668 -18.68368 -17.09613 -16.66519 -16.49078 -16.06939 -15.76722 -15.59621 -15.27198 -14.63955 -14.56580 -14.47900 -14.07738 -13.91792 -13.80972 -13.29125 -12.98441 -12.82218 -12.61995 -12.48006 -12.37224 -12.33363 -12.01905 -11.86828 -11.81665 -11.42514 -11.40815 -11.22915 -11.02239 -10.92519 -10.82580 -10.76859 -10.48101 -10.31377 -10.04713 -9.96316 -9.70390 -9.68603 -9.47239 -9.06062 -8.68142 -8.64706 -8.45991 -6.88721 -5.76500 -3.11705 2.95286 3.09566 3.36756 3.41857 3.43301 3.59737 4.09636 4.43354 4.58590 4.62425 4.72763 4.78712 4.96109 5.03829 5.15917 5.19415 5.22142 5.22234 5.29926 5.34234 5.38645 5.45320 5.45992 5.59773 5.63433 5.64711 5.66790 5.72104 5.82251 5.87134 5.94604 5.98010 6.00021 6.14410 6.24840 6.30505 6.36922 6.43074 6.48755 6.64546 6.66138 6.68996 6.82004 6.89609 7.06132 7.23271 7.50922 7.58813 7.76161 8.04831 8.17785 8.69690 9.10983 9.77589 10.46650 11.35447 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010827 B = 0.004081 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.390370 B = 6859.114023 C = 7627.832802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.086 3.914 3 H 0.069 0.931 4 C 0.022 3.978 5 N -0.540 5.540 6 C 0.025 3.975 7 C 0.032 3.968 8 C 0.078 3.922 9 H 0.092 0.908 10 C 0.523 3.477 11 O -0.527 6.527 12 N -0.686 5.686 13 C 0.133 3.867 14 C -0.112 4.112 15 C -0.116 4.116 16 C -0.114 4.114 17 C 0.159 3.841 18 H 0.023 0.977 19 N -0.584 5.584 20 C -0.234 4.234 21 H 0.079 0.921 22 C -0.002 4.002 23 N -0.917 5.917 24 Si 0.909 3.091 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.178 3.822 29 C -0.140 4.140 30 O -0.352 6.352 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.027 0.973 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.048 0.952 41 H 0.403 0.597 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.064 0.936 48 H 0.254 0.746 49 H 0.035 0.965 50 H 0.065 0.935 51 H 0.065 0.935 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.317 -7.331 -12.559 17.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.028 3.972 3 H 0.087 0.913 4 C -0.106 4.106 5 N -0.265 5.265 6 C -0.123 4.123 7 C -0.097 4.097 8 C 0.016 3.984 9 H 0.110 0.890 10 C 0.306 3.694 11 O -0.403 6.403 12 N -0.338 5.338 13 C 0.045 3.955 14 C -0.151 4.151 15 C -0.155 4.155 16 C -0.152 4.152 17 C 0.049 3.951 18 H 0.040 0.960 19 N -0.307 5.307 20 C -0.362 4.362 21 H 0.096 0.904 22 C -0.199 4.199 23 N -0.564 5.564 24 Si 0.739 3.261 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.055 3.945 29 C -0.179 4.179 30 O -0.270 6.270 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.111 0.889 40 H 0.066 0.934 41 H 0.239 0.761 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.064 0.936 49 H 0.053 0.947 50 H 0.083 0.917 51 H 0.083 0.917 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.755 -7.034 -11.854 16.886 hybrid contribution 1.078 0.127 -0.796 1.346 sum -8.677 -6.906 -12.649 16.822 Atomic orbital electron populations 1.21716 0.92504 1.03039 1.02707 1.22213 0.95059 0.95823 0.84131 0.91315 1.22884 0.87788 1.00380 0.99594 1.62192 1.09043 1.52830 1.02410 1.22389 1.01164 0.96774 0.91952 1.22671 1.01487 0.96094 0.89404 1.21949 0.83287 1.00161 0.92971 0.88989 1.19820 0.83096 0.80623 0.85855 1.90671 1.49943 1.47181 1.52492 1.45602 1.06275 1.55086 1.26826 1.21533 0.99666 0.89671 0.84588 1.21867 0.97870 0.94449 1.00891 1.22822 0.95204 0.97657 0.99776 1.21830 0.98338 0.95980 0.99066 1.20838 0.90139 0.88352 0.95806 0.96023 1.43666 1.21442 1.04187 1.61406 1.18955 0.96574 0.91911 1.28727 0.90363 1.24786 0.98257 0.96767 1.00099 1.69907 1.33779 1.10614 1.42083 0.86255 0.82404 0.79157 0.78241 1.21148 1.21643 1.21214 1.22013 0.84080 0.93181 0.95255 1.22799 1.00508 0.99146 0.95435 1.88115 1.18571 1.78219 1.42116 0.91829 0.91249 0.90963 0.89564 0.93822 0.95441 0.91154 0.90780 0.88851 0.93395 0.76088 0.91290 0.91101 0.92365 0.91945 0.91766 0.91701 0.93584 0.94671 0.91671 0.91650 0.91339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.57 37.16 0.36 -0.99 16 2 C 0.09 1.02 3.42 -26.68 -0.09 0.93 16 3 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 4 C 0.02 0.23 4.94 -3.72 -0.02 0.21 16 5 N -0.54 -6.17 4.99 -242.60 -1.21 -7.38 16 6 C 0.03 0.23 9.63 60.07 0.58 0.81 16 7 C 0.03 0.41 4.90 -3.71 -0.02 0.39 16 8 C 0.08 1.20 3.22 -27.83 -0.09 1.11 16 9 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 10 C 0.52 9.32 6.51 -10.99 -0.07 9.25 16 11 O -0.53 -11.05 14.66 -14.27 -0.21 -11.25 16 12 N -0.69 -11.97 4.35 -46.58 -0.20 -12.18 16 13 C 0.13 2.42 0.40 -130.71 -0.05 2.36 16 14 C -0.11 -1.77 6.04 -26.19 -0.16 -1.93 16 15 C -0.12 -1.61 6.93 -23.53 -0.16 -1.77 16 16 C -0.11 -1.83 6.47 -26.20 -0.17 -1.99 16 17 C 0.16 3.11 2.64 -68.71 -0.18 2.92 16 18 H 0.02 0.46 7.94 -51.93 -0.41 0.05 16 19 N -0.58 -13.85 3.12 -162.68 -0.51 -14.36 16 20 C -0.23 -6.07 10.29 -15.06 -0.15 -6.22 16 21 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 22 C 0.00 -0.06 5.49 -17.43 -0.10 -0.15 16 23 N -0.92 -26.01 10.55 55.49 0.59 -25.43 16 24 Si 0.91 21.28 29.55 -169.99 -5.02 16.26 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 28 C 0.18 4.25 5.33 -0.76 0.00 4.24 16 29 C -0.14 -2.81 6.19 -25.44 -0.16 -2.97 16 30 O -0.35 -5.59 9.65 -55.06 -0.53 -6.12 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.72 8.11 -51.93 -0.42 0.30 16 35 H 0.04 0.47 8.14 -51.92 -0.42 0.05 16 36 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.09 1.12 8.01 -51.93 -0.42 0.70 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.40 7.01 7.68 -40.82 -0.31 6.69 16 42 H 0.07 1.15 6.86 -51.93 -0.36 0.80 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.06 1.03 7.38 -51.93 -0.38 0.65 16 48 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 49 H 0.04 0.92 7.98 -51.93 -0.41 0.50 16 50 H 0.07 1.73 7.05 -51.92 -0.37 1.36 16 51 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 52 H 0.07 1.44 7.18 -51.93 -0.37 1.06 16 LS Contribution 396.55 15.07 5.98 5.98 Total: -1.00 -30.84 396.55 -10.95 -41.79 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -9.34 Total: 6.49 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -0.49 Total: 6.20 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: -1.33 Total: -59.34 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.74 Total: -17.38 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.84 -10.95 -41.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991362533.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.415 kcal (2) G-P(sol) polarization free energy of solvation -30.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds