Wall clock time and date at job start Tue Mar 31 2020 20:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.50113 * 2 1 4 4 C 1.53095 * 109.50994 * 239.91100 * 2 1 3 5 5 N 1.47010 * 109.25707 * 183.17281 * 4 2 1 6 6 C 1.46903 * 111.00370 * 182.38835 * 5 4 2 7 7 C 1.47014 * 110.75558 * 58.61389 * 5 4 2 8 8 C 1.53105 * 109.25822 * 301.38301 * 7 5 4 9 9 H 1.08996 * 109.50540 * 296.87332 * 8 7 5 10 10 C 1.50697 * 109.50782 * 176.77979 * 8 7 5 11 11 O 1.21280 * 120.00081 * 245.08899 * 10 8 7 12 12 N 1.34779 * 119.99834 * 65.08822 * 10 8 7 13 13 C 1.46502 * 119.99838 * 179.97438 * 12 10 8 14 14 C 1.51222 * 111.46185 * 68.11418 * 13 12 10 15 15 C 1.55693 * 104.60664 * 84.03586 * 14 13 12 16 16 C 1.56287 * 105.93537 * 7.25391 * 15 14 13 17 17 C 1.50524 * 101.75565 * 24.25696 * 16 15 14 18 18 H 1.08998 * 108.14831 * 66.26870 * 17 16 15 19 19 N 1.42707 * 128.13968 * 198.70184 * 17 16 15 20 20 C 1.36946 * 127.10286 * 331.73834 * 19 17 16 21 21 H 1.07994 * 119.99865 * 0.02562 * 20 19 17 22 22 C 1.38808 * 119.99773 * 180.02562 * 20 19 17 23 23 N 1.31620 * 120.00392 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99952 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.47055 * 59.99669 * 24 22 20 26 26 H 1.48504 * 109.47179 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.46646 * 299.99787 * 24 22 20 28 28 C 1.49286 * 105.79249 * 151.70563 * 19 17 16 29 29 C 1.52126 * 111.08434 * 288.29996 * 13 12 10 30 30 O 1.43017 * 109.29246 * 56.82659 * 8 7 5 31 31 H 1.08997 * 109.46747 * 180.09004 * 1 2 3 32 32 H 1.08994 * 109.47277 * 300.09144 * 1 2 3 33 33 H 1.08997 * 109.46948 * 60.09446 * 1 2 3 34 34 H 1.08995 * 109.50944 * 63.23775 * 4 2 1 35 35 H 1.09008 * 109.50468 * 303.10321 * 4 2 1 36 36 H 1.09005 * 109.47049 * 292.41591 * 6 5 4 37 37 H 1.09005 * 109.46497 * 52.40767 * 6 5 4 38 38 H 1.08990 * 109.47588 * 172.40937 * 6 5 4 39 39 H 1.08995 * 109.51099 * 181.44924 * 7 5 4 40 40 H 1.08999 * 109.54495 * 61.33887 * 7 5 4 41 41 H 0.97002 * 120.00025 * 359.97438 * 12 10 8 42 42 H 1.08997 * 110.40913 * 325.25746 * 14 13 12 43 43 H 1.08996 * 110.40760 * 202.81737 * 14 13 12 44 44 H 1.09003 * 110.16140 * 248.13706 * 15 14 13 45 45 H 1.09004 * 110.15742 * 126.36876 * 15 14 13 46 46 H 1.08997 * 110.96703 * 142.37474 * 16 15 14 47 47 H 1.09001 * 110.96807 * 266.10008 * 16 15 14 48 48 H 0.96996 * 120.00278 * 179.97438 * 23 22 20 49 49 H 1.08999 * 110.05494 * 110.60086 * 28 19 17 50 50 H 1.09009 * 110.04748 * 232.07482 * 28 19 17 51 51 H 1.09004 * 111.14989 * 168.15962 * 29 13 12 52 52 H 1.08998 * 111.15216 * 43.93967 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7235 -1.2486 5 7 3.5094 -0.7870 -1.2051 6 6 4.0449 -1.4251 -2.4151 7 6 3.9649 -1.4867 0.0050 8 6 3.4344 -0.7555 1.2410 9 1 3.8542 0.2497 1.2774 10 6 3.8315 -1.5121 2.4824 11 8 2.9802 -2.0172 3.1831 12 7 5.1328 -1.6274 2.8138 13 6 5.5188 -2.3624 4.0209 14 6 5.2393 -3.8420 3.8809 15 6 6.4838 -4.4079 3.1358 16 6 7.5073 -3.2296 3.0537 17 6 7.0816 -2.3722 4.2154 18 1 7.2748 -2.9255 5.1345 19 7 7.3812 -0.9972 4.4523 20 6 8.4859 -0.3075 4.0287 21 1 9.2457 -0.8091 3.4478 22 6 8.6289 1.0362 4.3460 23 7 7.7027 1.6477 5.0535 24 14 10.1354 1.9773 3.7675 25 1 10.1963 1.9504 2.2841 26 1 10.0496 3.3843 4.2346 27 1 11.3580 1.3449 4.3247 28 6 6.2414 -0.4658 5.2567 29 6 5.1516 -1.5851 5.2759 30 8 2.0084 -0.6750 1.1666 31 1 -0.3633 -1.0277 0.0016 32 1 -0.3633 0.5152 0.8891 33 1 -0.3633 0.5124 -0.8908 34 1 1.7268 -0.1792 -2.1390 35 1 1.6339 -1.7342 -1.2761 36 1 3.7637 -2.4782 -2.4254 37 1 3.6367 -0.9314 -3.2971 38 1 5.1314 -1.3391 -2.4208 39 1 5.0545 -1.4997 0.0296 40 1 3.5889 -2.5098 -0.0020 41 1 5.8137 -1.2237 2.2532 42 1 4.3371 -4.0042 3.2912 43 1 5.1412 -4.3049 4.8628 44 1 6.2055 -4.7342 2.1337 45 1 6.9118 -5.2388 3.6968 46 1 8.5275 -3.5892 3.1874 47 1 7.4061 -2.6900 2.1121 48 1 7.8028 2.5866 5.2756 49 1 6.5706 -0.2472 6.2725 50 1 5.8431 0.4355 4.7904 51 1 5.2436 -2.2082 6.1655 52 1 4.1507 -1.1609 5.1971 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991362533.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:27 Heat of formation + Delta-G solvation = -49.644076 kcal Electronic energy + Delta-G solvation = -32136.418765 eV Core-core repulsion = 28136.333919 eV Total energy + Delta-G solvation = -4000.084847 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.09657 -40.92344 -39.18403 -36.79757 -36.14392 -34.61299 -33.97432 -33.44508 -31.69597 -30.25093 -28.54271 -28.02771 -27.37020 -26.11363 -25.83970 -23.49691 -22.49551 -21.98032 -21.49503 -21.19530 -20.16039 -18.46450 -18.29084 -17.82459 -17.26606 -17.04072 -16.74615 -16.35614 -16.24186 -15.87680 -15.70472 -15.61380 -15.56576 -14.93875 -14.66711 -14.20478 -14.06236 -13.95176 -13.65043 -13.52012 -13.32933 -13.08700 -13.05150 -12.94413 -12.85560 -12.83147 -12.71422 -12.59585 -12.22557 -12.18722 -12.12038 -12.03547 -11.80205 -11.74293 -11.54953 -11.35004 -11.02805 -10.74390 -10.69828 -10.53232 -9.95426 -9.50620 -8.86121 -7.81632 -5.17830 1.49946 1.51787 1.56160 1.57979 1.84122 2.52316 2.68877 2.96556 3.09200 3.38568 3.59596 3.68395 3.75819 3.81454 3.88716 3.92521 4.07624 4.10451 4.20886 4.30013 4.32311 4.39243 4.42452 4.50283 4.54955 4.56027 4.58789 4.62107 4.66512 4.70209 4.80134 4.83571 4.94523 4.97933 4.99745 5.02882 5.06608 5.11801 5.22550 5.23419 5.29362 5.50026 5.56391 5.60809 5.67230 5.76737 5.77632 5.90526 6.06253 6.19519 6.61367 7.05914 7.26201 7.78778 8.51198 9.30031 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010827 B = 0.004081 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.390370 B = 6859.114023 C = 7627.832802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.076 3.924 3 H 0.066 0.934 4 C 0.026 3.974 5 N -0.551 5.551 6 C 0.025 3.975 7 C 0.043 3.957 8 C 0.082 3.918 9 H 0.085 0.915 10 C 0.522 3.478 11 O -0.561 6.561 12 N -0.681 5.681 13 C 0.139 3.861 14 C -0.108 4.108 15 C -0.102 4.102 16 C -0.108 4.108 17 C 0.149 3.851 18 H 0.018 0.982 19 N -0.596 5.596 20 C -0.233 4.233 21 H 0.091 0.909 22 C -0.060 4.060 23 N -0.952 5.952 24 Si 0.972 3.028 25 H -0.273 1.273 26 H -0.302 1.302 27 H -0.280 1.280 28 C 0.191 3.809 29 C -0.130 4.130 30 O -0.381 6.381 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.042 0.958 36 H 0.031 0.969 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.043 0.957 41 H 0.404 0.596 42 H 0.061 0.939 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.073 0.927 47 H 0.067 0.933 48 H 0.245 0.755 49 H 0.001 0.999 50 H 0.030 0.970 51 H 0.080 0.920 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.853 -9.063 -15.260 19.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.018 3.982 3 H 0.084 0.916 4 C -0.102 4.102 5 N -0.276 5.276 6 C -0.122 4.122 7 C -0.086 4.086 8 C 0.021 3.979 9 H 0.103 0.897 10 C 0.307 3.693 11 O -0.439 6.439 12 N -0.333 5.333 13 C 0.051 3.949 14 C -0.147 4.147 15 C -0.140 4.140 16 C -0.147 4.147 17 C 0.040 3.960 18 H 0.035 0.965 19 N -0.319 5.319 20 C -0.361 4.361 21 H 0.108 0.892 22 C -0.254 4.254 23 N -0.600 5.600 24 Si 0.801 3.199 25 H -0.198 1.198 26 H -0.229 1.229 27 H -0.206 1.206 28 C 0.067 3.933 29 C -0.169 4.169 30 O -0.300 6.300 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.121 0.879 34 H 0.131 0.869 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.119 0.881 40 H 0.061 0.939 41 H 0.240 0.760 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.103 0.897 46 H 0.092 0.908 47 H 0.085 0.915 48 H 0.054 0.946 49 H 0.019 0.981 50 H 0.048 0.952 51 H 0.098 0.902 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.276 -8.807 -14.594 19.406 hybrid contribution 0.891 0.683 0.085 1.126 sum -8.385 -8.124 -14.509 18.623 Atomic orbital electron populations 1.21738 0.90783 1.03161 1.03766 1.22528 0.96449 0.95526 0.83671 0.91647 1.22898 0.87229 1.00409 0.99665 1.62215 1.09718 1.53032 1.02625 1.22463 1.01414 0.97063 0.91302 1.22520 1.01688 0.95380 0.88999 1.21836 0.83628 0.99533 0.92923 0.89725 1.20274 0.82621 0.80078 0.86286 1.90643 1.50726 1.48793 1.53774 1.45585 1.06377 1.54884 1.26442 1.21528 0.98406 0.91175 0.83811 1.21864 0.98756 0.92284 1.01749 1.22755 0.93151 0.97025 1.01019 1.21849 0.99587 0.95929 0.97316 1.21052 0.91287 0.86408 0.97269 0.96480 1.43771 1.20882 1.05954 1.61298 1.19366 0.97121 0.92086 1.27530 0.89166 1.25558 1.00930 0.97921 1.00946 1.70133 1.35710 1.10192 1.43997 0.85243 0.79333 0.77042 0.78244 1.19839 1.22902 1.20645 1.21666 0.85249 0.93404 0.93015 1.22655 0.98237 0.98396 0.97631 1.88083 1.18592 1.78912 1.44396 0.92114 0.92235 0.87855 0.86882 0.94013 0.95034 0.89369 0.90468 0.88118 0.93887 0.75970 0.91996 0.90192 0.90321 0.89735 0.90830 0.91477 0.94607 0.98086 0.95206 0.90177 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.57 71.98 0.69 -1.74 16 2 C 0.08 1.73 3.42 30.63 0.10 1.84 16 3 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 4 C 0.03 0.49 4.94 86.31 0.43 0.91 16 5 N -0.55 -11.50 4.99 -921.43 -4.59 -16.10 16 6 C 0.02 0.38 9.63 127.69 1.23 1.61 16 7 C 0.04 1.05 4.90 86.32 0.42 1.47 16 8 C 0.08 2.54 3.22 29.88 0.10 2.64 16 9 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 10 C 0.52 18.88 6.51 87.66 0.57 19.45 16 11 O -0.56 -23.94 14.66 15.93 0.23 -23.71 16 12 N -0.68 -23.81 4.35 -419.67 -1.83 -25.64 16 13 C 0.14 4.97 0.40 4.32 0.00 4.97 16 14 C -0.11 -3.19 6.04 30.94 0.19 -3.01 16 15 C -0.10 -2.44 6.93 32.67 0.23 -2.21 16 16 C -0.11 -3.19 6.47 30.94 0.20 -2.99 16 17 C 0.15 5.68 2.64 46.47 0.12 5.80 16 18 H 0.02 0.70 7.94 -2.39 -0.02 0.69 16 19 N -0.60 -28.63 3.12 -668.60 -2.09 -30.72 16 20 C -0.23 -12.08 10.29 84.03 0.86 -11.22 16 21 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 22 C -0.06 -3.29 5.49 84.86 0.47 -2.82 16 23 N -0.95 -56.17 10.55 21.65 0.23 -55.94 16 24 Si 0.97 44.12 29.55 68.60 2.03 46.15 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 26 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 27 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 28 C 0.19 9.54 5.33 86.96 0.46 10.00 16 29 C -0.13 -5.37 6.19 31.43 0.19 -5.17 16 30 O -0.38 -12.21 9.65 -130.02 -1.26 -13.46 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.11 1.51 8.11 -2.39 -0.02 1.49 16 35 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.03 0.46 8.14 -2.38 -0.02 0.44 16 37 H 0.09 1.03 8.08 -2.38 -0.02 1.01 16 38 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.10 2.26 8.01 -2.39 -0.02 2.24 16 40 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.40 13.99 7.68 -92.71 -0.71 13.28 16 42 H 0.06 1.96 6.86 -2.39 -0.02 1.95 16 43 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 46 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.07 1.96 7.38 -2.39 -0.02 1.94 16 48 H 0.24 14.29 8.31 -92.71 -0.77 13.52 16 49 H 0.00 0.05 7.98 -2.39 -0.02 0.03 16 50 H 0.03 1.68 7.05 -2.38 -0.02 1.66 16 51 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 52 H 0.05 2.42 7.18 -2.39 -0.02 2.40 16 Total: -1.00 -69.08 396.55 -0.83 -69.91 By element: Atomic # 1 Polarization: 29.79 SS G_CDS: 0.18 Total: 29.97 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: 6.27 Total: 19.53 kcal Atomic # 7 Polarization: -120.12 SS G_CDS: -8.28 Total: -128.40 kcal Atomic # 8 Polarization: -36.15 SS G_CDS: -1.02 Total: -37.17 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -69.08 -0.83 -69.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991362533.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.267 kcal (2) G-P(sol) polarization free energy of solvation -69.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds