Wall clock time and date at job start Tue Mar 31 2020 20:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.50956 * 2 1 4 4 C 1.53100 * 109.54336 * 239.88816 * 2 1 3 5 5 N 1.47018 * 109.25926 * 183.19518 * 4 2 1 6 6 C 1.46899 * 111.00058 * 182.39366 * 5 4 2 7 7 C 1.47015 * 110.75060 * 58.61769 * 5 4 2 8 8 C 1.53101 * 109.25802 * 301.38436 * 7 5 4 9 9 H 1.09006 * 109.54078 * 296.89234 * 8 7 5 10 10 C 1.50703 * 109.50711 * 176.78698 * 8 7 5 11 11 O 1.21280 * 119.99730 * 245.21624 * 10 8 7 12 12 N 1.34780 * 120.00036 * 65.21426 * 10 8 7 13 13 C 1.46495 * 119.99785 * 180.02562 * 12 10 8 14 14 C 1.51225 * 111.07629 * 281.64453 * 13 12 10 15 15 C 1.56961 * 104.27480 * 274.68763 * 14 13 12 16 16 C 1.56278 * 106.00218 * 353.82036 * 15 14 13 17 17 C 1.50510 * 101.76090 * 334.98639 * 16 15 14 18 18 H 1.09001 * 107.73232 * 293.24219 * 17 16 15 19 19 N 1.42693 * 128.18736 * 161.34327 * 17 16 15 20 20 C 1.36935 * 127.09988 * 28.29256 * 19 17 16 21 21 H 1.08000 * 120.00049 * 342.73995 * 20 19 17 22 22 C 1.38810 * 120.00078 * 162.74784 * 20 19 17 23 23 N 1.31625 * 120.00144 * 171.11900 * 22 20 19 24 24 Si 1.86798 * 120.00088 * 351.11065 * 22 20 19 25 25 H 1.48493 * 109.47449 * 185.49020 * 24 22 20 26 26 H 1.48503 * 109.47040 * 305.49271 * 24 22 20 27 27 H 1.48501 * 109.46966 * 65.48763 * 24 22 20 28 28 C 1.49293 * 105.79552 * 208.02547 * 19 17 16 29 29 C 1.52146 * 111.09644 * 61.01499 * 13 12 10 30 30 O 1.43014 * 109.26141 * 56.84775 * 8 7 5 31 31 H 1.08996 * 109.46842 * 299.91550 * 1 2 3 32 32 H 1.09003 * 109.47098 * 59.91751 * 1 2 3 33 33 H 1.09006 * 109.47216 * 179.91316 * 1 2 3 34 34 H 1.08994 * 109.50526 * 303.12993 * 4 2 1 35 35 H 1.09001 * 109.50667 * 63.26465 * 4 2 1 36 36 H 1.09003 * 109.46991 * 59.99944 * 6 5 4 37 37 H 1.09000 * 109.47123 * 179.97438 * 6 5 4 38 38 H 1.08996 * 109.46921 * 299.99908 * 6 5 4 39 39 H 1.09008 * 109.50617 * 181.45304 * 7 5 4 40 40 H 1.09000 * 109.50890 * 61.32038 * 7 5 4 41 41 H 0.96992 * 119.99911 * 0.02562 * 12 10 8 42 42 H 1.08996 * 110.41292 * 34.21229 * 14 13 12 43 43 H 1.09006 * 110.41266 * 156.64709 * 14 13 12 44 44 H 1.08996 * 110.75950 * 234.33819 * 15 14 13 45 45 H 1.09007 * 109.55310 * 112.65507 * 15 14 13 46 46 H 1.09004 * 110.96862 * 216.86946 * 16 15 14 47 47 H 1.09001 * 111.00320 * 93.12220 * 16 15 14 48 48 H 0.97003 * 119.99933 * 356.51205 * 23 22 20 49 49 H 1.09002 * 110.04639 * 128.14756 * 28 19 17 50 50 H 1.08998 * 110.04926 * 249.62307 * 28 19 17 51 51 H 1.09003 * 111.14749 * 316.09382 * 29 13 12 52 52 H 1.08998 * 111.18431 * 191.88810 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0421 -0.7238 -1.2481 5 7 3.5102 -0.7875 -1.2036 6 6 4.0464 -1.4257 -2.4132 7 6 3.9649 -1.4870 0.0069 8 6 3.4334 -0.7555 1.2425 9 1 3.8527 0.2500 1.2793 10 6 3.8297 -1.5118 2.4843 11 8 2.9780 -2.0187 3.1832 12 7 5.1306 -1.6249 2.8181 13 6 5.5159 -2.3605 4.0249 14 6 5.2965 -1.5236 5.2652 15 6 6.6083 -0.6714 5.3941 16 6 7.5762 -1.2004 4.2870 17 6 7.0737 -2.6048 4.0857 18 1 7.2752 -3.1637 4.9996 19 7 7.2996 -3.4719 2.9752 20 6 8.3834 -3.4769 2.1382 21 1 9.0399 -2.6202 2.0997 22 6 8.6382 -4.5830 1.3392 23 7 9.5704 -4.5242 0.4118 24 14 7.6584 -6.1550 1.5802 25 1 8.2069 -7.2197 0.7025 26 1 7.7532 -6.5848 2.9985 27 1 6.2359 -5.9099 1.2314 28 6 6.1136 -4.3768 2.9183 29 6 5.0769 -3.8150 3.9431 30 8 2.0075 -0.6757 1.1665 31 1 -0.3633 0.5125 0.8907 32 1 -0.3633 0.5151 -0.8893 33 1 -0.3634 -1.0277 -0.0016 34 1 1.6347 -1.7344 -1.2756 35 1 1.7283 -0.1797 -2.1389 36 1 3.7479 -0.8511 -3.2900 37 1 5.1343 -1.4594 -2.3544 38 1 3.6549 -2.4398 -2.4928 39 1 5.0546 -1.4999 0.0323 40 1 3.5882 -2.5098 -0.0006 41 1 5.8117 -1.2191 2.2592 42 1 4.4219 -0.8848 5.1430 43 1 5.1815 -2.1635 6.1402 44 1 7.0576 -0.8003 6.3788 45 1 6.3787 0.3801 5.2212 46 1 8.6078 -1.2020 4.6391 47 1 7.4794 -0.6164 3.3718 48 1 10.0444 -3.6930 0.2525 49 1 5.6876 -4.3718 1.9149 50 1 6.4030 -5.3901 3.1968 51 1 4.0600 -3.8979 3.5595 52 1 5.1715 -4.3099 4.9097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991362538.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:36 Heat of formation + Delta-G solvation = -45.798709 kcal Electronic energy + Delta-G solvation = -32390.269742 eV Core-core repulsion = 28390.351643 eV Total energy + Delta-G solvation = -3999.918099 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.21409 -40.99142 -39.27127 -36.84293 -36.38141 -34.66196 -34.24001 -33.72767 -31.86996 -30.32542 -28.74622 -28.09722 -27.77817 -26.19822 -25.31104 -23.53616 -23.04961 -22.21362 -21.49531 -21.10900 -20.31112 -19.18690 -18.47636 -17.85007 -17.27395 -17.03810 -16.83842 -16.80192 -16.33506 -16.04263 -15.87890 -15.69480 -15.46455 -15.17957 -14.90809 -14.70493 -14.23061 -13.95698 -13.71744 -13.65387 -13.57759 -13.39152 -13.16799 -13.10255 -12.92623 -12.85000 -12.70526 -12.66525 -12.26581 -12.23398 -12.13650 -11.92625 -11.76485 -11.51729 -11.37061 -11.28544 -11.08490 -10.82489 -10.76729 -10.56813 -10.03070 -9.61758 -9.03706 -8.58944 -5.47924 1.37572 1.44077 1.49075 1.64332 1.76542 2.50657 2.62896 2.84127 2.91277 3.17539 3.44489 3.56323 3.65133 3.73186 3.74330 3.86015 3.95602 4.01394 4.08601 4.17306 4.22431 4.28090 4.29198 4.37179 4.40873 4.50110 4.52646 4.54557 4.62293 4.64225 4.66165 4.70372 4.82936 4.84871 4.87760 4.91657 4.94039 5.01467 5.03884 5.11672 5.17592 5.24196 5.29916 5.45100 5.63101 5.67288 5.68092 5.81407 6.02706 6.11534 6.52349 6.79196 7.18455 7.49423 8.17229 8.93284 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010708 B = 0.004834 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.216030 B = 5790.927466 C = 7262.375523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.081 3.919 3 H 0.079 0.921 4 C 0.021 3.979 5 N -0.540 5.540 6 C 0.023 3.977 7 C 0.036 3.964 8 C 0.089 3.911 9 H 0.107 0.893 10 C 0.523 3.477 11 O -0.555 6.555 12 N -0.687 5.687 13 C 0.139 3.861 14 C -0.106 4.106 15 C -0.101 4.101 16 C -0.112 4.112 17 C 0.145 3.855 18 H 0.029 0.971 19 N -0.606 5.606 20 C -0.293 4.293 21 H 0.058 0.942 22 C -0.069 4.069 23 N -0.968 5.968 24 Si 1.100 2.900 25 H -0.313 1.313 26 H -0.282 1.282 27 H -0.270 1.270 28 C 0.104 3.896 29 C -0.118 4.118 30 O -0.378 6.378 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.054 0.946 34 H 0.033 0.967 35 H 0.116 0.884 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.023 0.977 39 H 0.088 0.912 40 H 0.025 0.975 41 H 0.404 0.596 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.061 0.939 48 H 0.250 0.750 49 H 0.034 0.966 50 H 0.032 0.968 51 H 0.076 0.924 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.551 12.353 1.516 19.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.023 3.977 3 H 0.097 0.903 4 C -0.107 4.107 5 N -0.264 5.264 6 C -0.125 4.125 7 C -0.094 4.094 8 C 0.027 3.973 9 H 0.125 0.875 10 C 0.308 3.692 11 O -0.433 6.433 12 N -0.339 5.339 13 C 0.051 3.949 14 C -0.145 4.145 15 C -0.139 4.139 16 C -0.150 4.150 17 C 0.037 3.963 18 H 0.047 0.953 19 N -0.331 5.331 20 C -0.421 4.421 21 H 0.076 0.924 22 C -0.263 4.263 23 N -0.612 5.612 24 Si 0.930 3.070 25 H -0.242 1.242 26 H -0.209 1.209 27 H -0.196 1.196 28 C -0.020 4.020 29 C -0.157 4.157 30 O -0.297 6.297 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.134 0.866 36 H 0.115 0.885 37 H 0.085 0.915 38 H 0.041 0.959 39 H 0.106 0.894 40 H 0.043 0.957 41 H 0.240 0.760 42 H 0.086 0.914 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.098 0.902 46 H 0.084 0.916 47 H 0.079 0.921 48 H 0.059 0.941 49 H 0.052 0.948 50 H 0.050 0.950 51 H 0.095 0.905 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.170 10.839 1.589 19.531 hybrid contribution 1.027 0.507 -0.373 1.205 sum -15.142 11.347 1.216 18.961 Atomic orbital electron populations 1.21748 0.90734 1.02969 1.04050 1.22521 0.96406 0.95732 0.83018 0.90321 1.22985 0.86859 1.00309 1.00577 1.62283 1.09920 1.52170 1.02040 1.22456 1.00662 0.97212 0.92128 1.22548 1.01204 0.95227 0.90376 1.21810 0.83735 0.99993 0.91748 0.87530 1.20273 0.82557 0.80276 0.86108 1.90644 1.50678 1.48286 1.53695 1.45633 1.06466 1.54726 1.27050 1.21638 0.97524 0.90292 0.85418 1.22102 0.98248 0.98354 0.95778 1.22964 0.92906 0.99567 0.98470 1.21840 0.99554 0.94271 0.99376 1.21112 0.91946 0.92953 0.90318 0.95345 1.43914 1.18459 1.38136 1.32626 1.19996 1.03092 1.01394 1.17668 0.92395 1.26744 0.99985 1.03601 0.95944 1.70990 1.27168 1.28888 1.34182 0.83441 0.74851 0.73651 0.75017 1.24245 1.20926 1.19601 1.22838 0.87385 0.93788 0.97967 1.22492 0.98212 0.95072 0.99887 1.88083 1.18400 1.79084 1.44175 0.91488 0.87901 0.92720 0.94886 0.86608 0.88499 0.91516 0.95864 0.89369 0.95662 0.76002 0.91446 0.89531 0.89564 0.90236 0.91648 0.92070 0.94054 0.94812 0.95047 0.90532 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.57 71.98 0.69 -1.47 16 2 C 0.08 1.66 3.42 30.63 0.10 1.76 16 3 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 4 C 0.02 0.41 4.95 86.31 0.43 0.84 16 5 N -0.54 -12.75 4.99 -921.41 -4.59 -17.34 16 6 C 0.02 0.50 9.60 127.69 1.23 1.72 16 7 C 0.04 1.02 4.90 86.31 0.42 1.44 16 8 C 0.09 2.50 3.22 29.88 0.10 2.60 16 9 H 0.11 2.58 8.14 -2.38 -0.02 2.56 16 10 C 0.52 17.19 6.57 87.66 0.58 17.77 16 11 O -0.56 -21.64 14.63 15.93 0.23 -21.41 16 12 N -0.69 -21.70 4.45 -419.12 -1.87 -23.56 16 13 C 0.14 4.46 0.42 4.45 0.00 4.46 16 14 C -0.11 -2.75 6.26 31.40 0.20 -2.55 16 15 C -0.10 -2.27 6.97 33.12 0.23 -2.04 16 16 C -0.11 -3.33 6.47 30.93 0.20 -3.13 16 17 C 0.15 5.27 2.65 46.59 0.12 5.39 16 18 H 0.03 1.07 7.99 -2.39 -0.02 1.05 16 19 N -0.61 -27.45 3.03 -667.99 -2.02 -29.47 16 20 C -0.29 -15.86 10.59 84.03 0.89 -14.97 16 21 H 0.06 3.34 8.06 -2.91 -0.02 3.31 16 22 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 23 N -0.97 -60.52 13.71 21.65 0.30 -60.22 16 24 Si 1.10 54.41 24.58 68.60 1.69 56.09 16 25 H -0.31 -16.05 7.11 99.48 0.71 -15.34 16 26 H -0.28 -13.22 6.67 99.48 0.66 -12.56 16 27 H -0.27 -12.36 5.56 99.48 0.55 -11.81 16 28 C 0.10 4.42 4.51 86.96 0.39 4.82 16 29 C -0.12 -4.17 6.09 31.43 0.19 -3.98 16 30 O -0.38 -11.04 9.65 -130.02 -1.25 -12.30 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 34 H 0.03 0.74 8.14 -2.39 -0.02 0.73 16 35 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.09 2.65 8.02 -2.38 -0.02 2.63 16 40 H 0.03 0.83 8.14 -2.39 -0.02 0.82 16 41 H 0.40 12.59 7.48 -92.71 -0.69 11.90 16 42 H 0.07 1.82 7.73 -2.39 -0.02 1.80 16 43 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 44 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 46 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 47 H 0.06 1.85 7.20 -2.39 -0.02 1.83 16 48 H 0.25 15.58 8.73 -92.71 -0.81 14.77 16 49 H 0.03 1.55 6.53 -2.39 -0.02 1.54 16 50 H 0.03 1.40 4.45 -2.39 -0.01 1.39 16 51 H 0.08 2.86 6.28 -2.39 -0.01 2.85 16 52 H 0.10 2.97 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -70.62 388.81 -1.32 -71.94 By element: Atomic # 1 Polarization: 27.17 SS G_CDS: -0.03 Total: 27.14 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 6.24 Total: 9.12 kcal Atomic # 7 Polarization: -122.41 SS G_CDS: -8.19 Total: -130.60 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -1.02 Total: -33.70 kcal Atomic # 14 Polarization: 54.41 SS G_CDS: 1.69 Total: 56.09 kcal Total: -70.62 -1.32 -71.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991362538.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.141 kcal (2) G-P(sol) polarization free energy of solvation -70.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds