Wall clock time and date at job start Tue Mar 31 2020 20:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47453 * 2 1 4 4 N 1.46506 * 109.46888 * 119.99446 * 2 1 3 5 5 C 1.34774 * 120.00145 * 275.00304 * 4 2 1 6 6 O 1.21284 * 119.99831 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00125 * 180.02562 * 5 4 2 8 8 H 1.09002 * 109.59827 * 265.64670 * 7 5 4 9 9 C 1.52988 * 109.60760 * 145.31978 * 7 5 4 10 10 C 1.51781 * 110.87994 * 326.54657 * 9 7 5 11 11 C 1.51789 * 113.70239 * 293.06672 * 10 9 7 12 12 C 1.52896 * 110.87036 * 66.89892 * 11 10 9 13 13 C 1.51421 * 108.38971 * 274.96957 * 12 11 10 14 14 O 1.21281 * 119.89668 * 251.18149 * 13 12 11 15 15 N 1.33372 * 120.21557 * 71.20626 * 13 12 11 16 16 C 1.52994 * 109.47221 * 239.99555 * 2 1 3 17 17 C 1.53043 * 109.46044 * 180.02562 * 16 2 1 18 18 C 1.53193 * 109.31156 * 178.61187 * 17 16 2 19 19 N 1.46923 * 108.77418 * 54.63763 * 18 17 16 20 20 C 1.36934 * 120.63224 * 126.41245 * 19 18 17 21 21 H 1.08004 * 120.00037 * 324.35806 * 20 19 18 22 22 C 1.38814 * 120.00338 * 144.36072 * 20 19 18 23 23 N 1.31620 * 119.99779 * 358.63187 * 22 20 19 24 24 Si 1.86797 * 120.00104 * 178.63374 * 22 20 19 25 25 H 1.48505 * 109.46985 * 90.00161 * 24 22 20 26 26 H 1.48506 * 109.47161 * 209.99618 * 24 22 20 27 27 H 1.48499 * 109.47498 * 329.99960 * 24 22 20 28 28 C 1.46927 * 118.73962 * 306.38761 * 19 18 17 29 29 C 1.53038 * 109.46288 * 60.00240 * 16 2 1 30 30 H 1.08996 * 109.47082 * 300.00845 * 1 2 3 31 31 H 1.09006 * 109.46733 * 60.00208 * 1 2 3 32 32 H 1.08999 * 109.47378 * 180.02562 * 1 2 3 33 33 H 0.96994 * 119.99823 * 94.99828 * 4 2 1 34 34 H 1.08994 * 109.19334 * 206.18616 * 9 7 5 35 35 H 1.08999 * 109.19304 * 86.90535 * 9 7 5 36 36 H 1.09000 * 108.61490 * 54.11747 * 10 9 7 37 37 H 1.09003 * 108.61380 * 172.02157 * 10 9 7 38 38 H 1.08996 * 109.22402 * 187.06750 * 11 10 9 39 39 H 1.09001 * 109.22282 * 306.41139 * 11 10 9 40 40 H 1.09008 * 109.72363 * 155.28335 * 12 11 10 41 41 H 1.08997 * 109.80938 * 34.71635 * 12 11 10 42 42 H 0.97005 * 119.78498 * 180.25878 * 15 13 12 43 43 H 1.09008 * 109.46100 * 300.03065 * 16 2 1 44 44 H 1.08989 * 109.49912 * 298.56582 * 17 16 2 45 45 H 1.08998 * 109.49982 * 58.66598 * 17 16 2 46 46 H 1.08997 * 109.59029 * 294.84698 * 18 17 16 47 47 H 1.08999 * 109.70193 * 174.49512 * 18 17 16 48 48 H 0.96996 * 119.99840 * 180.02562 * 23 22 20 49 49 H 1.09005 * 109.58668 * 293.82396 * 28 19 18 50 50 H 1.09000 * 109.70286 * 173.46749 * 28 19 18 51 51 H 1.09001 * 109.49862 * 301.33752 * 29 16 2 52 52 H 1.08997 * 109.50033 * 61.39869 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1469 -0.0181 2.3572 6 8 1.8589 1.1588 2.4114 7 6 2.6498 -0.7283 3.5876 8 1 1.8038 -1.0821 4.1769 9 6 3.4934 0.2334 4.4267 10 6 4.2455 1.2084 3.5393 11 6 5.3145 0.5544 2.6829 12 6 4.6863 -0.3693 1.6389 13 6 4.4482 -1.7210 2.2785 14 8 5.1310 -2.6705 1.9572 15 7 3.4898 -1.8710 3.1937 16 6 2.0400 -0.7213 -1.2491 17 6 3.5704 -0.7217 -1.2485 18 6 4.0773 -1.4747 -2.4826 19 7 3.4746 -0.8772 -3.6818 20 6 4.2602 -0.4518 -4.7195 21 1 5.2254 -0.0098 -4.5202 22 6 3.8163 -0.5884 -6.0276 23 7 2.6519 -1.1513 -6.2720 24 14 4.8714 0.0267 -7.4411 25 1 5.7730 -1.0621 -7.8960 26 1 3.9968 0.4472 -8.5652 27 1 5.6832 1.1838 -6.9859 28 6 2.0127 -0.7452 -3.7468 29 6 1.5298 0.0002 -2.4986 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 2.2489 -1.6316 1.1528 34 1 4.2088 -0.3392 5.0169 35 1 2.8403 0.7905 5.0983 36 1 3.5302 1.7052 2.8838 37 1 4.7179 1.9606 4.1711 38 1 5.8891 1.3278 2.1734 39 1 5.9813 -0.0249 3.3216 40 1 5.3623 -0.4795 0.7908 41 1 3.7381 0.0475 1.2996 42 1 3.3451 -2.7389 3.6022 43 1 1.6761 -1.7489 -1.2492 44 1 3.9345 0.3053 -1.2740 45 1 3.9338 -1.2147 -0.3469 46 1 3.7907 -2.5241 -2.4137 47 1 5.1629 -1.3957 -2.5411 48 1 2.3419 -1.2472 -7.1861 49 1 1.5576 -1.7352 -3.7810 50 1 1.7336 -0.1838 -4.6384 51 1 0.4401 0.0213 -2.4871 52 1 1.9133 1.0204 -2.5117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997296535.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:57 Heat of formation + Delta-G solvation = -42.261426 kcal Electronic energy + Delta-G solvation = -32392.046245 eV Core-core repulsion = 28392.281534 eV Total energy + Delta-G solvation = -3999.764711 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.87065 -39.23302 -38.19709 -36.39697 -35.49862 -34.33190 -32.87282 -31.63032 -31.05994 -29.67715 -29.19488 -27.16890 -25.44891 -24.71429 -23.32044 -22.11686 -21.84893 -20.56627 -20.36323 -20.01096 -18.91378 -18.05047 -17.67125 -16.72147 -16.25155 -15.97845 -15.58801 -15.12420 -14.84089 -14.36338 -14.26564 -14.14043 -13.88112 -13.65736 -13.49902 -13.37538 -13.16296 -12.92053 -12.86121 -12.81879 -12.31677 -12.26265 -11.96511 -11.69895 -11.42935 -11.23054 -11.17865 -10.96649 -10.88427 -10.80227 -10.66339 -10.44060 -10.19779 -10.14937 -10.12224 -9.91212 -9.89946 -9.52482 -9.46682 -9.34392 -8.93074 -8.44446 -6.50403 -5.76316 -3.28535 2.22072 2.41041 2.85903 3.00861 3.38704 3.45145 3.46452 4.22906 4.25182 4.40522 4.50494 4.54553 4.71929 4.88037 4.92629 5.01867 5.16575 5.26516 5.31414 5.41831 5.43348 5.48599 5.52206 5.66144 5.69663 5.71619 5.75111 5.82878 5.89274 5.91861 5.96644 6.05295 6.12732 6.21135 6.25161 6.37701 6.42497 6.45809 6.53382 6.65245 6.72396 6.80690 6.84957 6.89572 7.04105 7.28137 7.44506 7.76690 7.81951 7.92865 7.98866 8.54936 9.27788 9.87048 10.47631 11.31151 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017275 B = 0.003368 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.408451 B = 8312.741207 C = 8979.153317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 H 0.089 0.911 4 N -0.720 5.720 5 C 0.511 3.489 6 O -0.523 6.523 7 C 0.122 3.878 8 H 0.124 0.876 9 C -0.115 4.115 10 C -0.156 4.156 11 C -0.110 4.110 12 C -0.179 4.179 13 C 0.520 3.480 14 O -0.536 6.536 15 N -0.726 5.726 16 C -0.085 4.085 17 C -0.133 4.133 18 C 0.146 3.854 19 N -0.592 5.592 20 C -0.253 4.253 21 H 0.062 0.938 22 C 0.008 3.992 23 N -0.906 5.906 24 Si 0.903 3.097 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.279 1.279 28 C 0.172 3.828 29 C -0.134 4.134 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.401 0.599 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.104 0.896 41 H 0.121 0.879 42 H 0.404 0.596 43 H 0.066 0.934 44 H 0.058 0.942 45 H 0.053 0.947 46 H 0.015 0.985 47 H 0.052 0.948 48 H 0.254 0.746 49 H 0.015 0.985 50 H 0.091 0.909 51 H 0.052 0.948 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.238 1.827 22.621 22.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.107 0.893 4 N -0.372 5.372 5 C 0.298 3.702 6 O -0.400 6.400 7 C 0.014 3.986 8 H 0.142 0.858 9 C -0.154 4.154 10 C -0.193 4.193 11 C -0.148 4.148 12 C -0.220 4.220 13 C 0.308 3.692 14 O -0.412 6.412 15 N -0.383 5.383 16 C -0.104 4.104 17 C -0.172 4.172 18 C 0.020 3.980 19 N -0.315 5.315 20 C -0.383 4.383 21 H 0.079 0.921 22 C -0.191 4.191 23 N -0.550 5.550 24 Si 0.733 3.267 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.204 1.204 28 C 0.047 3.953 29 C -0.173 4.173 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.237 0.763 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.121 0.879 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.122 0.878 41 H 0.139 0.861 42 H 0.241 0.759 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.071 0.929 46 H 0.033 0.967 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.033 0.967 50 H 0.109 0.891 51 H 0.071 0.929 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.123 2.350 22.186 22.528 hybrid contribution 0.492 -0.658 -0.519 0.971 sum -2.631 1.692 21.668 21.892 Atomic orbital electron populations 1.22194 0.95270 1.02028 1.02478 1.21288 0.94023 0.97581 0.83446 0.89309 1.46563 1.66178 1.14545 1.09937 1.20429 0.77525 0.87557 0.84720 1.90664 1.49771 1.14970 1.84605 1.21590 0.94704 0.87713 0.94624 0.85786 1.21554 0.98896 0.97217 0.97702 1.21666 0.99171 0.98712 0.99743 1.21175 0.98097 0.98659 0.96902 1.22954 1.06314 0.92739 0.99958 1.20751 0.78740 0.91250 0.78499 1.90790 1.46558 1.41957 1.61900 1.46054 1.35636 1.12951 1.43638 1.21356 0.96579 0.99286 0.93182 1.22273 0.94437 1.01258 0.99255 1.20886 0.96597 0.93877 0.86642 1.43967 1.01918 1.69840 1.15796 1.19152 1.00908 1.33346 0.84858 0.92061 1.25299 0.97294 0.98659 0.97802 1.69920 1.19358 1.46670 1.19035 0.86291 0.79838 0.78452 0.82166 1.21319 1.21655 1.20433 1.20812 0.83436 0.96692 0.94404 1.22296 0.98744 1.00042 0.96249 0.92686 0.90780 0.92649 0.76333 0.90562 0.89808 0.87892 0.91595 0.90535 0.92092 0.87759 0.86147 0.75884 0.91574 0.92326 0.92859 0.96711 0.92912 0.93611 0.96702 0.89063 0.92934 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.13 37.16 0.34 -1.55 16 2 C 0.14 1.78 1.87 -67.93 -0.13 1.65 16 3 H 0.09 1.27 7.58 -51.93 -0.39 0.88 16 4 N -0.72 -7.75 2.50 -53.81 -0.13 -7.89 16 5 C 0.51 5.27 4.14 -10.99 -0.05 5.23 16 6 O -0.52 -6.76 13.65 5.55 0.08 -6.69 16 7 C 0.12 0.88 3.79 -68.71 -0.26 0.62 16 8 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 9 C -0.11 -0.82 5.33 -27.36 -0.15 -0.96 16 10 C -0.16 -1.41 5.17 -27.96 -0.14 -1.55 16 11 C -0.11 -1.10 5.64 -27.40 -0.15 -1.25 16 12 C -0.18 -2.09 3.46 -27.58 -0.10 -2.19 16 13 C 0.52 6.18 5.45 -11.26 -0.06 6.12 16 14 O -0.54 -8.60 17.92 5.56 0.10 -8.50 16 15 N -0.73 -5.86 4.59 -54.57 -0.25 -6.11 16 16 C -0.08 -1.30 1.79 -90.58 -0.16 -1.47 16 17 C -0.13 -2.23 4.37 -26.61 -0.12 -2.35 16 18 C 0.15 3.10 6.52 -3.71 -0.02 3.08 16 19 N -0.59 -14.75 2.98 -172.32 -0.51 -15.26 16 20 C -0.25 -6.95 9.55 -15.06 -0.14 -7.09 16 21 H 0.06 1.67 7.83 -52.48 -0.41 1.26 16 22 C 0.01 0.22 5.22 -17.43 -0.09 0.13 16 23 N -0.91 -26.10 10.88 55.49 0.60 -25.50 16 24 Si 0.90 21.74 29.55 -169.99 -5.02 16.71 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 C 0.17 4.02 5.22 -3.71 -0.02 4.00 16 29 C -0.13 -2.40 5.04 -26.61 -0.13 -2.53 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.88 6.40 -51.93 -0.33 0.55 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.40 4.20 6.73 -40.82 -0.27 3.93 16 34 H 0.08 0.49 8.05 -51.93 -0.42 0.07 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.10 1.16 4.72 -51.93 -0.24 0.92 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.60 7.86 -51.93 -0.41 0.19 16 40 H 0.10 1.37 7.33 -51.92 -0.38 0.99 16 41 H 0.12 1.44 2.55 -51.93 -0.13 1.31 16 42 H 0.40 2.57 8.91 -40.82 -0.36 2.21 16 43 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 44 H 0.06 1.03 8.14 -51.94 -0.42 0.60 16 45 H 0.05 0.80 4.32 -51.93 -0.22 0.58 16 46 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.05 1.13 7.93 -51.93 -0.41 0.71 16 48 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 49 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 50 H 0.09 2.41 6.14 -51.93 -0.32 2.09 16 51 H 0.05 0.84 6.36 -51.93 -0.33 0.51 16 52 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 375.66 15.07 5.66 5.66 Total: -1.00 -32.04 375.66 -9.30 -41.33 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -8.43 Total: 6.35 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -1.39 Total: -0.11 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -0.30 Total: -54.76 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: 0.18 Total: -15.19 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.04 -9.30 -41.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997296535.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.927 kcal (2) G-P(sol) polarization free energy of solvation -32.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds