Wall clock time and date at job start Tue Mar 31 2020 21:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46948 * 2 1 4 4 N 1.46500 * 109.47172 * 120.00316 * 2 1 3 5 5 C 1.34780 * 120.00104 * 274.99957 * 4 2 1 6 6 O 1.21281 * 119.99430 * 0.02562 * 5 4 2 7 7 C 1.50694 * 120.00101 * 179.97438 * 5 4 2 8 8 H 1.09004 * 109.73508 * 95.63314 * 7 5 4 9 9 C 1.52992 * 109.60461 * 216.04130 * 7 5 4 10 10 C 1.51780 * 110.87505 * 33.29718 * 9 7 5 11 11 C 1.51796 * 113.80996 * 66.99564 * 10 9 7 12 12 C 1.53060 * 110.74497 * 293.17951 * 11 10 9 13 13 C 1.51428 * 108.49056 * 84.92861 * 12 11 10 14 14 O 1.21274 * 119.89577 * 108.77792 * 13 12 11 15 15 N 1.33365 * 120.20973 * 288.75778 * 13 12 11 16 16 C 1.53006 * 109.47252 * 240.00517 * 2 1 3 17 17 C 1.53032 * 109.45933 * 180.02562 * 16 2 1 18 18 C 1.53194 * 109.31145 * 178.60054 * 17 16 2 19 19 N 1.46928 * 108.76555 * 54.65450 * 18 17 16 20 20 C 1.36937 * 120.63190 * 126.36254 * 19 18 17 21 21 H 1.08003 * 119.99983 * 331.14353 * 20 19 18 22 22 C 1.38809 * 120.00083 * 151.14108 * 20 19 18 23 23 N 1.31624 * 119.99900 * 343.56635 * 22 20 19 24 24 Si 1.86798 * 119.99986 * 163.56432 * 22 20 19 25 25 H 1.48504 * 109.46999 * 90.00461 * 24 22 20 26 26 H 1.48507 * 109.47166 * 210.00005 * 24 22 20 27 27 H 1.48498 * 109.47147 * 330.00104 * 24 22 20 28 28 C 1.46921 * 118.73773 * 306.38345 * 19 18 17 29 29 C 1.53043 * 109.45990 * 59.96979 * 16 2 1 30 30 H 1.09000 * 109.47479 * 60.00331 * 1 2 3 31 31 H 1.09004 * 109.46846 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47110 * 299.99485 * 1 2 3 33 33 H 0.97000 * 119.99982 * 95.00124 * 4 2 1 34 34 H 1.08991 * 109.19676 * 272.93879 * 9 7 5 35 35 H 1.09003 * 109.19439 * 153.65286 * 9 7 5 36 36 H 1.09002 * 108.61457 * 188.10944 * 10 9 7 37 37 H 1.08999 * 108.61567 * 305.87196 * 10 9 7 38 38 H 1.08996 * 109.22387 * 53.51170 * 11 10 9 39 39 H 1.09008 * 109.21982 * 172.90168 * 11 10 9 40 40 H 1.09005 * 109.62861 * 204.62332 * 12 11 10 41 41 H 1.09000 * 109.63523 * 325.22432 * 12 11 10 42 42 H 0.97000 * 119.78343 * 179.72428 * 15 13 12 43 43 H 1.08995 * 109.45586 * 299.99799 * 16 2 1 44 44 H 1.09000 * 109.49796 * 298.56166 * 17 16 2 45 45 H 1.08999 * 109.50227 * 58.66211 * 17 16 2 46 46 H 1.08996 * 109.59905 * 294.86623 * 18 17 16 47 47 H 1.09000 * 109.70002 * 174.50452 * 18 17 16 48 48 H 0.97000 * 119.99885 * 179.97438 * 23 22 20 49 49 H 1.09003 * 109.59011 * 293.82109 * 28 19 18 50 50 H 1.09004 * 109.59046 * 173.39507 * 28 19 18 51 51 H 1.09003 * 109.49448 * 301.33774 * 29 16 2 52 52 H 1.09000 * 109.49490 * 61.43265 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0184 2.3572 6 8 1.8582 1.1582 2.4117 7 6 2.6489 -0.7290 3.5877 8 1 3.7224 -0.5709 3.6920 9 6 1.9278 -0.1870 4.8234 10 6 0.5010 0.2071 4.4875 11 6 -0.3900 -0.9672 4.1250 12 6 0.0601 -1.6029 2.8074 13 6 1.1622 -2.5976 3.1059 14 8 0.9452 -3.7869 3.0100 15 7 2.3707 -2.1699 3.4735 16 6 2.0401 -0.7212 -1.2493 17 6 3.5704 -0.7215 -1.2487 18 6 4.0773 -1.4746 -2.4827 19 7 3.4748 -0.8767 -3.6819 20 6 4.2607 -0.4503 -4.7191 21 1 5.2679 -0.1098 -4.5289 22 6 3.7630 -0.4557 -6.0149 23 7 2.6854 -1.1544 -6.3030 24 14 4.6224 0.5288 -7.3496 25 1 5.6499 -0.3190 -8.0060 26 1 3.6261 0.9696 -8.3588 27 1 5.2744 1.7182 -6.7453 28 6 2.0130 -0.7445 -3.7470 29 6 1.5292 0.0002 -2.4987 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 2.2491 -1.6318 1.1525 34 1 2.4625 0.6865 5.1961 35 1 1.9148 -0.9553 5.5965 36 1 0.0696 0.7186 5.3480 37 1 0.5204 0.9015 3.6475 38 1 -0.3412 -1.7130 4.9184 39 1 -1.4179 -0.6194 4.0222 40 1 -0.7812 -2.1170 2.3427 41 1 0.4362 -0.8297 2.1374 42 1 3.0710 -2.8126 3.6671 43 1 1.6767 -1.7487 -1.2492 44 1 3.9345 0.3055 -1.2741 45 1 3.9338 -1.2147 -0.3471 46 1 3.7905 -2.5239 -2.4141 47 1 5.1629 -1.3956 -2.5411 48 1 2.3373 -1.1579 -7.2084 49 1 1.5577 -1.7343 -3.7815 50 1 1.7362 -0.1815 -4.6384 51 1 0.4394 0.0207 -2.4868 52 1 1.9127 1.0204 -2.5121 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997296536.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:01 Heat of formation + Delta-G solvation = -62.940252 kcal Electronic energy + Delta-G solvation = -31885.240730 eV Core-core repulsion = 27884.579318 eV Total energy + Delta-G solvation = -4000.661412 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.72659 -40.29968 -39.50643 -37.38660 -36.81914 -35.17056 -34.53580 -32.86824 -32.02746 -31.42183 -30.51026 -28.11695 -27.12211 -25.51772 -24.72327 -23.70806 -23.03164 -21.70523 -21.27658 -20.95401 -20.39745 -18.87609 -18.69350 -18.42306 -17.37194 -16.90728 -16.75676 -16.26037 -16.05672 -15.76696 -15.32885 -15.17756 -15.10583 -14.94803 -14.86173 -14.73493 -14.37458 -14.29308 -14.04822 -13.69337 -13.59703 -13.43807 -13.27476 -12.91195 -12.76156 -12.63138 -12.55542 -12.40005 -12.17212 -12.07388 -12.01111 -11.80922 -11.77405 -11.55084 -11.50127 -11.21290 -11.07513 -10.94718 -10.80247 -10.54152 -10.18279 -9.90756 -8.65802 -7.87537 -5.33508 1.41388 1.45549 1.47243 1.48265 1.56878 2.03866 2.22652 2.50962 3.26938 3.41333 3.47704 3.67483 3.72847 3.75951 3.88816 3.94870 4.03400 4.07247 4.13912 4.31056 4.40204 4.43536 4.52717 4.57410 4.58722 4.72046 4.72822 4.78594 4.83588 4.88670 4.95575 5.00961 5.02462 5.03873 5.11058 5.15627 5.18992 5.23709 5.27569 5.34401 5.41352 5.44908 5.54168 5.59683 5.65681 5.76424 5.79169 6.02267 6.39708 6.41511 7.07900 7.13096 7.15845 7.87592 8.38906 9.18474 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023132 B = 0.002770 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.129895 B =10106.425457 C =10183.824905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.154 3.846 3 H 0.079 0.921 4 N -0.718 5.718 5 C 0.511 3.489 6 O -0.546 6.546 7 C 0.127 3.873 8 H 0.162 0.838 9 C -0.115 4.115 10 C -0.154 4.154 11 C -0.106 4.106 12 C -0.188 4.188 13 C 0.521 3.479 14 O -0.588 6.588 15 N -0.708 5.708 16 C -0.076 4.076 17 C -0.110 4.110 18 C 0.140 3.860 19 N -0.611 5.611 20 C -0.264 4.264 21 H 0.063 0.937 22 C -0.050 4.050 23 N -0.934 5.934 24 Si 0.965 3.035 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.271 1.271 28 C 0.178 3.822 29 C -0.120 4.120 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.404 0.596 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.128 0.872 42 H 0.416 0.584 43 H 0.066 0.934 44 H 0.051 0.949 45 H 0.077 0.923 46 H 0.011 0.989 47 H 0.050 0.950 48 H 0.250 0.750 49 H -0.006 1.006 50 H 0.050 0.950 51 H 0.076 0.924 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.016 2.701 25.406 25.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.050 3.950 3 H 0.097 0.903 4 N -0.371 5.371 5 C 0.299 3.701 6 O -0.424 6.424 7 C 0.019 3.981 8 H 0.179 0.821 9 C -0.153 4.153 10 C -0.192 4.192 11 C -0.144 4.144 12 C -0.228 4.228 13 C 0.309 3.691 14 O -0.468 6.468 15 N -0.363 5.363 16 C -0.095 4.095 17 C -0.149 4.149 18 C 0.014 3.986 19 N -0.335 5.335 20 C -0.395 4.395 21 H 0.081 0.919 22 C -0.245 4.245 23 N -0.580 5.580 24 Si 0.793 3.207 25 H -0.212 1.212 26 H -0.218 1.218 27 H -0.196 1.196 28 C 0.052 3.948 29 C -0.159 4.159 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.241 0.759 34 H 0.118 0.882 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.145 0.855 42 H 0.255 0.745 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.096 0.904 46 H 0.029 0.971 47 H 0.068 0.932 48 H 0.059 0.941 49 H 0.012 0.988 50 H 0.069 0.931 51 H 0.094 0.906 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.533 3.071 25.197 25.628 hybrid contribution 0.646 -0.608 -1.341 1.608 sum -2.887 2.462 23.856 24.156 Atomic orbital electron populations 1.22280 0.94440 1.02655 1.02871 1.20926 0.94456 0.96645 0.82981 0.90308 1.46494 1.66267 1.14627 1.09723 1.20910 0.76812 0.87218 0.85141 1.90685 1.50070 1.16629 1.84978 1.21803 1.04600 0.79009 0.92686 0.82094 1.21604 0.95707 1.02907 0.95110 1.21612 0.94941 0.98452 1.04150 1.21182 1.00632 0.97769 0.94805 1.23044 0.97718 1.00145 1.01882 1.20847 0.84450 0.89036 0.74722 1.90761 1.82411 1.19288 1.54349 1.45931 1.13025 1.08200 1.69128 1.21198 0.95738 0.99264 0.93305 1.21860 0.95046 1.00418 0.97618 1.21054 0.96449 0.94063 0.86990 1.44316 1.02457 1.70457 1.16239 1.19489 0.97937 1.35524 0.86516 0.91883 1.25800 0.99350 1.00207 0.99171 1.70181 1.26237 1.42324 1.19273 0.85315 0.77520 0.78894 0.78942 1.21180 1.21820 1.19567 1.20572 0.82899 0.95637 0.95691 1.22048 1.00138 0.98967 0.94753 0.90685 0.91874 0.91876 0.75912 0.88239 0.89251 0.90453 0.89994 0.92024 0.90053 0.89292 0.85500 0.74502 0.91519 0.93052 0.90408 0.97090 0.93174 0.94132 0.98750 0.93120 0.90604 0.93073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 7.91 71.98 0.57 -2.92 16 2 C 0.15 3.59 2.16 44.99 0.10 3.69 16 3 H 0.08 2.09 7.58 -2.39 -0.02 2.07 16 4 N -0.72 -13.65 2.65 -442.52 -1.17 -14.82 16 5 C 0.51 9.06 4.17 87.65 0.37 9.43 16 6 O -0.55 -12.72 13.74 -3.03 -0.04 -12.76 16 7 C 0.13 1.35 3.80 44.11 0.17 1.52 16 8 H 0.16 0.74 8.14 -2.38 -0.02 0.72 16 9 C -0.11 -1.12 5.34 30.19 0.16 -0.96 16 10 C -0.15 -2.08 5.16 29.80 0.15 -1.93 16 11 C -0.11 -1.57 5.67 30.22 0.17 -1.40 16 12 C -0.19 -3.42 5.31 30.10 0.16 -3.26 16 13 C 0.52 10.46 5.60 88.11 0.49 10.96 16 14 O -0.59 -17.11 17.92 -3.01 -0.05 -17.17 16 15 N -0.71 -8.89 4.59 -445.73 -2.05 -10.94 16 16 C -0.08 -2.20 1.79 -10.77 -0.02 -2.22 16 17 C -0.11 -3.41 5.22 30.67 0.16 -3.25 16 18 C 0.14 5.66 6.52 86.36 0.56 6.23 16 19 N -0.61 -30.53 2.99 -699.10 -2.09 -32.62 16 20 C -0.26 -14.63 9.58 84.03 0.80 -13.82 16 21 H 0.06 3.41 7.88 -2.91 -0.02 3.39 16 22 C -0.05 -2.80 4.92 84.86 0.42 -2.38 16 23 N -0.93 -55.49 11.22 21.65 0.24 -55.25 16 24 Si 0.97 45.02 29.58 68.60 2.03 47.05 16 25 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 26 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 27 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 28 C 0.18 8.44 5.29 86.36 0.46 8.89 16 29 C -0.12 -4.21 5.04 30.67 0.15 -4.05 16 30 H 0.07 1.61 6.40 -2.39 -0.02 1.60 16 31 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 32 H 0.06 1.29 7.46 -2.39 -0.02 1.27 16 33 H 0.40 7.42 6.61 -92.71 -0.61 6.81 16 34 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.09 0.71 8.05 -2.39 -0.02 0.69 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 1.50 4.77 -2.39 -0.01 1.49 16 38 H 0.06 0.92 7.86 -2.39 -0.02 0.90 16 39 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.09 1.76 8.13 -2.38 -0.02 1.74 16 41 H 0.13 2.33 1.11 -2.39 0.00 2.33 16 42 H 0.42 3.91 8.91 -92.71 -0.83 3.08 16 43 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.08 1.92 7.41 -2.39 -0.02 1.90 16 46 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 47 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 48 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 49 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 50 H 0.05 2.75 6.10 -2.38 -0.01 2.74 16 51 H 0.08 2.33 6.36 -2.39 -0.02 2.31 16 52 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -71.76 379.77 1.25 -70.51 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: -0.49 Total: 21.50 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 4.88 Total: 4.52 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -5.07 Total: -113.64 kcal Atomic # 8 Polarization: -29.83 SS G_CDS: -0.10 Total: -29.93 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -71.76 1.25 -70.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997296536.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.567 kcal (2) G-P(sol) polarization free energy of solvation -71.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds