Wall clock time and date at job start Tue Mar 31 2020 21:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46415 * 2 1 4 4 N 1.46500 * 109.47420 * 119.99921 * 2 1 3 5 5 C 1.34774 * 119.99786 * 275.00408 * 4 2 1 6 6 O 1.21287 * 120.00419 * 359.97438 * 5 4 2 7 7 C 1.50701 * 119.99956 * 179.97438 * 5 4 2 8 8 H 1.08997 * 109.29672 * 40.41222 * 7 5 4 9 9 C 1.52928 * 109.30024 * 281.03666 * 7 5 4 10 10 C 1.53341 * 108.67353 * 188.93598 * 9 7 5 11 11 C 1.53067 * 108.42830 * 67.52986 * 10 9 7 12 12 C 1.50182 * 109.88958 * 311.09704 * 11 10 9 13 13 O 1.21281 * 118.24359 * 197.56222 * 12 11 10 14 14 N 1.33355 * 123.50801 * 17.58581 * 12 11 10 15 15 C 1.46500 * 117.94412 * 177.79811 * 14 12 11 16 16 C 1.53001 * 109.47210 * 240.00301 * 2 1 3 17 17 C 1.53040 * 109.45993 * 59.99537 * 16 2 1 18 18 C 1.53192 * 109.31031 * 181.37351 * 17 16 2 19 19 N 1.46928 * 108.77639 * 305.36311 * 18 17 16 20 20 C 1.36931 * 120.63565 * 233.58613 * 19 18 17 21 21 H 1.07997 * 120.00424 * 152.32218 * 20 19 18 22 22 C 1.38810 * 119.99773 * 332.32908 * 20 19 18 23 23 N 1.31618 * 120.00182 * 342.64001 * 22 20 19 24 24 Si 1.86804 * 119.99942 * 162.91635 * 22 20 19 25 25 H 1.48504 * 109.47026 * 179.72100 * 24 22 20 26 26 H 1.48499 * 109.47078 * 299.72147 * 24 22 20 27 27 H 1.48504 * 109.46920 * 59.72407 * 24 22 20 28 28 C 1.46926 * 118.73503 * 53.86164 * 19 18 17 29 29 C 1.53042 * 109.44917 * 180.02562 * 16 2 1 30 30 H 1.09000 * 109.47147 * 60.00001 * 1 2 3 31 31 H 1.09001 * 109.46723 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46884 * 299.99865 * 1 2 3 33 33 H 0.96996 * 120.00161 * 94.99604 * 4 2 1 34 34 H 1.08998 * 109.60055 * 308.68965 * 9 7 5 35 35 H 1.08999 * 109.60129 * 69.17773 * 9 7 5 36 36 H 1.09003 * 109.67067 * 307.79570 * 10 9 7 37 37 H 1.09004 * 109.70576 * 187.28206 * 10 9 7 38 38 H 1.08999 * 109.39895 * 190.97452 * 11 10 9 39 39 H 1.08993 * 109.40293 * 71.22736 * 11 10 9 40 40 H 1.09001 * 109.46740 * 269.97516 * 15 14 12 41 41 H 1.08991 * 109.47268 * 29.97530 * 15 14 12 42 42 H 1.09000 * 109.46678 * 149.97984 * 15 14 12 43 43 H 1.09000 * 109.45389 * 300.02434 * 16 2 1 44 44 H 1.08999 * 109.49685 * 61.42311 * 17 16 2 45 45 H 1.09000 * 109.52708 * 301.34254 * 17 16 2 46 46 H 1.09005 * 109.58669 * 185.58018 * 18 17 16 47 47 H 1.08997 * 109.70754 * 65.21972 * 18 17 16 48 48 H 0.97000 * 120.00243 * 180.02562 * 23 22 20 49 49 H 1.09004 * 109.58783 * 65.93076 * 28 19 18 50 50 H 1.09002 * 109.58800 * 186.35178 * 28 19 18 51 51 H 1.09004 * 109.49679 * 298.57219 * 29 16 2 52 52 H 1.09001 * 109.49643 * 58.66534 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0185 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3571 6 8 1.8590 1.1587 2.4115 7 6 2.6490 -0.7287 3.5877 8 1 3.4596 -1.4020 3.3094 9 6 1.5092 -1.5431 4.2013 10 6 1.9655 -2.0763 5.5647 11 6 2.1288 -0.8901 6.5182 12 6 2.9412 0.1873 5.8588 13 8 3.4377 1.0426 6.5609 14 7 3.1453 0.2542 4.5427 15 6 3.9174 1.3862 4.0243 16 6 2.0401 -0.7212 -1.2493 17 6 1.5297 0.0004 -2.4986 18 6 2.0138 -0.7440 -3.7469 19 7 3.4756 -0.8765 -3.6814 20 6 4.2619 -0.4510 -4.7185 21 1 5.2756 -0.1290 -4.5309 22 6 3.7562 -0.4333 -6.0111 23 7 2.6760 -1.1257 -6.3047 24 14 4.6130 0.5669 -7.3358 25 1 3.8841 0.4143 -8.6206 26 1 4.6285 1.9988 -6.9425 27 1 6.0076 0.0828 -7.4974 28 6 4.0773 -1.4799 -2.4845 29 6 3.5705 -0.7214 -1.2484 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2491 -1.6317 1.1526 34 1 0.6341 -0.9066 4.3318 35 1 1.2625 -2.3783 3.5458 36 1 2.9187 -2.5937 5.4560 37 1 1.2176 -2.7641 5.9594 38 1 2.6350 -1.2214 7.4249 39 1 1.1463 -0.4956 6.7770 40 1 3.2422 2.2088 3.7885 41 1 4.6363 1.7105 4.7765 42 1 4.4478 1.0814 3.1222 43 1 1.6762 -1.7487 -1.2493 44 1 1.9134 1.0206 -2.5118 45 1 0.4400 0.0218 -2.4874 46 1 1.7375 -0.1808 -4.6384 47 1 1.5586 -1.7337 -3.7843 48 1 2.3228 -1.1137 -7.2080 49 1 3.7867 -2.5284 -2.4185 50 1 5.1630 -1.4024 -2.5426 51 1 3.9345 0.3057 -1.2736 52 1 3.9337 -1.2146 -0.3467 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997409840.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:17 Heat of formation + Delta-G solvation = -58.852145 kcal Electronic energy + Delta-G solvation = -30694.156754 eV Core-core repulsion = 26693.672615 eV Total energy + Delta-G solvation = -4000.484139 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.26033 -39.69374 -38.08485 -36.54679 -35.47060 -34.30252 -33.00156 -31.60068 -30.35388 -29.67534 -29.00574 -27.35508 -25.67478 -25.26331 -23.14243 -22.67575 -22.09405 -21.03874 -20.54558 -19.23915 -19.00755 -17.71282 -16.98808 -16.77389 -16.70288 -15.96815 -15.53373 -15.16050 -14.85075 -14.60949 -14.29553 -14.07321 -13.99197 -13.85356 -13.61846 -13.39793 -13.33774 -12.99604 -12.71163 -12.44735 -12.39406 -12.34224 -12.24044 -11.95907 -11.84296 -11.52477 -11.44352 -11.37752 -11.17630 -11.01621 -10.72503 -10.48865 -10.36169 -10.25523 -10.21592 -9.96518 -9.85040 -9.60592 -9.49598 -9.12308 -8.84625 -8.48794 -6.70118 -5.81561 -3.23599 2.28725 2.33551 2.64972 3.06102 3.36718 3.42593 3.44195 4.10620 4.15211 4.20789 4.30493 4.47784 4.58449 4.72070 4.88703 4.93205 5.13857 5.16465 5.21173 5.25566 5.27400 5.34721 5.36394 5.41681 5.47014 5.55104 5.60695 5.64711 5.65862 5.79325 5.85806 5.91603 6.01180 6.03512 6.11136 6.19603 6.26555 6.38120 6.44845 6.56518 6.66232 6.72101 6.79635 6.93890 7.11281 7.31474 7.37894 7.62643 7.76963 7.87290 8.04034 8.42693 9.19070 9.82625 10.38895 11.26767 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023971 B = 0.002338 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.796144 B =11974.127304 C =12332.111282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.086 0.914 4 N -0.714 5.714 5 C 0.503 3.497 6 O -0.527 6.527 7 C 0.126 3.874 8 H 0.098 0.902 9 C -0.127 4.127 10 C -0.121 4.121 11 C -0.136 4.136 12 C 0.518 3.482 13 O -0.553 6.553 14 N -0.586 5.586 15 C 0.080 3.920 16 C -0.083 4.083 17 C -0.133 4.133 18 C 0.171 3.829 19 N -0.592 5.592 20 C -0.253 4.253 21 H 0.064 0.936 22 C 0.002 3.998 23 N -0.904 5.904 24 Si 0.901 3.099 25 H -0.290 1.290 26 H -0.284 1.284 27 H -0.283 1.283 28 C 0.146 3.854 29 C -0.125 4.125 30 H 0.072 0.928 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.400 0.600 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.088 0.912 47 H 0.017 0.983 48 H 0.254 0.746 49 H 0.016 0.984 50 H 0.052 0.948 51 H 0.058 0.942 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.336 -4.654 21.666 22.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.104 0.896 4 N -0.365 5.365 5 C 0.287 3.713 6 O -0.402 6.402 7 C 0.018 3.982 8 H 0.116 0.884 9 C -0.165 4.165 10 C -0.159 4.159 11 C -0.175 4.175 12 C 0.306 3.694 13 O -0.431 6.431 14 N -0.319 5.319 15 C -0.062 4.062 16 C -0.102 4.102 17 C -0.173 4.173 18 C 0.045 3.955 19 N -0.315 5.315 20 C -0.382 4.382 21 H 0.082 0.918 22 C -0.196 4.196 23 N -0.548 5.548 24 Si 0.731 3.269 25 H -0.216 1.216 26 H -0.210 1.210 27 H -0.209 1.209 28 C 0.019 3.981 29 C -0.165 4.165 30 H 0.091 0.909 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.234 0.766 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.106 0.894 47 H 0.035 0.965 48 H 0.064 0.936 49 H 0.034 0.966 50 H 0.070 0.930 51 H 0.076 0.924 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.359 -3.373 21.885 22.569 hybrid contribution 0.444 -0.042 -0.958 1.057 sum -3.914 -3.414 20.927 21.562 Atomic orbital electron populations 1.22195 0.95448 1.01953 1.02386 1.21206 0.93761 0.97575 0.83359 0.89594 1.46126 1.66740 1.14072 1.09572 1.20640 0.78541 0.87651 0.84495 1.90732 1.49207 1.15608 1.84674 1.20976 0.98246 0.90446 0.88510 0.88437 1.21876 0.97050 0.99930 0.97693 1.21663 1.02941 0.97310 0.93991 1.21686 1.01600 0.94469 0.99770 1.20129 0.80904 0.86906 0.81415 1.90722 1.50209 1.41038 1.61163 1.46899 1.53371 1.25797 1.05809 1.21784 0.96131 0.89283 0.99013 1.21337 0.96435 0.99274 0.93202 1.22263 0.98848 1.00097 0.96099 1.20772 0.83260 0.96826 0.94614 1.44056 1.02062 1.69621 1.15743 1.19138 0.97008 1.36396 0.85698 0.91816 1.25022 0.98417 0.99157 0.97024 1.70017 1.24583 1.40796 1.19402 0.86387 0.78952 0.80461 0.81079 1.21625 1.21025 1.20894 1.20974 0.96550 0.93783 0.86787 1.22118 0.94471 1.01330 0.98549 0.90924 0.92607 0.92815 0.76609 0.90126 0.88821 0.90627 0.89785 0.87955 0.88125 0.90891 0.90549 0.91770 0.91446 0.92517 0.92793 0.89423 0.96497 0.93585 0.96618 0.92965 0.92351 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.13 37.16 0.34 -1.52 16 2 C 0.14 1.79 2.16 -67.93 -0.15 1.64 16 3 H 0.09 1.28 7.58 -51.93 -0.39 0.88 16 4 N -0.71 -6.95 4.36 -53.80 -0.23 -7.19 16 5 C 0.50 5.43 6.28 -10.99 -0.07 5.36 16 6 O -0.53 -7.81 14.00 5.55 0.08 -7.74 16 7 C 0.13 1.02 3.08 -69.52 -0.21 0.80 16 8 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 9 C -0.13 -0.71 5.29 -26.59 -0.14 -0.85 16 10 C -0.12 -0.54 6.03 -26.52 -0.16 -0.70 16 11 C -0.14 -0.93 6.03 -28.10 -0.17 -1.10 16 12 C 0.52 5.86 7.47 -11.87 -0.09 5.77 16 13 O -0.55 -8.47 16.18 5.56 0.09 -8.38 16 14 N -0.59 -6.28 2.96 -176.51 -0.52 -6.80 16 15 C 0.08 0.95 8.69 59.85 0.52 1.47 16 16 C -0.08 -1.19 1.79 -90.58 -0.16 -1.35 16 17 C -0.13 -2.32 5.04 -26.61 -0.13 -2.45 16 18 C 0.17 3.86 5.31 -3.71 -0.02 3.84 16 19 N -0.59 -14.23 2.99 -172.05 -0.51 -14.74 16 20 C -0.25 -6.79 9.59 -15.06 -0.14 -6.94 16 21 H 0.06 1.69 7.89 -52.49 -0.41 1.28 16 22 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 23 N -0.90 -25.68 11.19 55.49 0.62 -25.06 16 24 Si 0.90 21.43 29.59 -169.99 -5.03 16.40 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 C 0.15 2.85 6.54 -3.49 -0.02 2.83 16 29 C -0.13 -1.94 5.23 -26.39 -0.14 -2.08 16 30 H 0.07 0.86 6.40 -51.93 -0.33 0.53 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.40 2.91 8.39 -40.82 -0.34 2.56 16 34 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 35 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.30 8.13 -51.93 -0.42 -0.12 16 37 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 1.00 6.95 -51.93 -0.36 0.64 16 41 H 0.08 0.93 7.13 -51.93 -0.37 0.56 16 42 H 0.06 0.69 7.75 -51.93 -0.40 0.29 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.05 0.83 6.36 -51.93 -0.33 0.50 16 46 H 0.09 2.26 6.04 -51.93 -0.31 1.95 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.25 7.01 8.31 -40.82 -0.34 6.68 16 49 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 51 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 52 H 0.05 0.59 7.40 -51.93 -0.38 0.20 16 LS Contribution 397.21 15.07 5.99 5.99 Total: -1.00 -33.53 397.21 -9.47 -43.00 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -9.11 Total: -0.18 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -0.84 Total: 4.69 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.65 Total: -53.79 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: 0.17 Total: -16.12 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.53 -9.47 -43.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997409840.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.849 kcal (2) G-P(sol) polarization free energy of solvation -33.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds