Wall clock time and date at job start Tue Mar 31 2020 21:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46768 * 2 1 4 4 N 1.46503 * 109.46757 * 240.00004 * 2 1 3 5 5 C 1.34778 * 120.00261 * 85.00539 * 4 2 1 6 6 O 1.21288 * 119.99741 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00132 * 179.97438 * 5 4 2 8 8 H 1.08994 * 109.29808 * 329.20119 * 7 5 4 9 9 C 1.52923 * 109.29592 * 88.58200 * 7 5 4 10 10 C 1.53351 * 108.67150 * 171.06486 * 9 7 5 11 11 C 1.53076 * 108.42457 * 292.46874 * 10 9 7 12 12 C 1.50172 * 109.88954 * 48.89811 * 11 10 9 13 13 O 1.21282 * 118.24374 * 162.39304 * 12 11 10 14 14 N 1.33359 * 123.51403 * 342.42190 * 12 11 10 15 15 C 1.46492 * 117.94908 * 182.24537 * 14 12 11 16 16 C 1.52997 * 109.47373 * 120.00054 * 2 1 3 17 17 C 1.53049 * 109.45609 * 300.00203 * 16 2 1 18 18 C 1.53195 * 109.30910 * 181.37337 * 17 16 2 19 19 N 1.46928 * 108.77204 * 305.36126 * 18 17 16 20 20 C 1.36945 * 120.62762 * 233.58626 * 19 18 17 21 21 H 1.08000 * 119.99456 * 152.06032 * 20 19 18 22 22 C 1.38804 * 120.00196 * 332.33190 * 20 19 18 23 23 N 1.31621 * 120.00247 * 158.30348 * 22 20 19 24 24 Si 1.86806 * 120.00096 * 338.31244 * 22 20 19 25 25 H 1.48498 * 109.47200 * 90.29596 * 24 22 20 26 26 H 1.48505 * 109.46901 * 210.29791 * 24 22 20 27 27 H 1.48499 * 109.46916 * 330.29660 * 24 22 20 28 28 C 1.46924 * 118.74253 * 53.86472 * 19 18 17 29 29 C 1.53040 * 109.44908 * 60.06023 * 16 2 1 30 30 H 1.09000 * 109.46768 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47027 * 299.99787 * 1 2 3 32 32 H 1.08998 * 109.47027 * 60.00164 * 1 2 3 33 33 H 0.97002 * 119.99502 * 264.99170 * 4 2 1 34 34 H 1.08996 * 109.60273 * 290.81852 * 9 7 5 35 35 H 1.08998 * 109.60589 * 51.31145 * 9 7 5 36 36 H 1.08999 * 109.67523 * 172.73296 * 10 9 7 37 37 H 1.09005 * 109.70095 * 52.21799 * 10 9 7 38 38 H 1.08993 * 109.39839 * 288.76990 * 11 10 9 39 39 H 1.08998 * 109.32975 * 168.98482 * 11 10 9 40 40 H 1.09005 * 109.47397 * 275.21005 * 15 14 12 41 41 H 1.08997 * 109.47542 * 35.21298 * 15 14 12 42 42 H 1.09000 * 109.47259 * 155.21293 * 15 14 12 43 43 H 1.08994 * 109.46171 * 180.02562 * 16 2 1 44 44 H 1.08996 * 109.49918 * 61.41764 * 17 16 2 45 45 H 1.09000 * 109.52314 * 301.33678 * 17 16 2 46 46 H 1.09002 * 109.58238 * 185.57708 * 18 17 16 47 47 H 1.09000 * 109.70793 * 65.22024 * 18 17 16 48 48 H 0.96997 * 120.00008 * 180.02562 * 23 22 20 49 49 H 1.09003 * 109.58372 * 65.92521 * 28 19 18 50 50 H 1.08993 * 109.59092 * 186.34879 * 28 19 18 51 51 H 1.09009 * 109.49730 * 298.57535 * 29 16 2 52 52 H 1.08994 * 109.49745 * 58.64090 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3572 6 8 1.8583 1.1584 -2.4117 7 6 2.6499 -0.7286 -3.5875 8 1 3.3374 -1.5205 -3.2906 9 6 1.4664 -1.3459 -4.3337 10 6 1.9589 -1.8680 -5.6889 11 6 2.3578 -0.6693 -6.5532 12 6 3.2492 0.2512 -5.7700 13 8 3.9127 1.0633 -6.3792 14 7 3.3506 0.2230 -4.4406 15 6 4.2205 1.2108 -3.7973 16 6 2.0401 -0.7212 1.2492 17 6 1.5297 0.0005 2.4986 18 6 2.0704 -0.7040 3.7469 19 7 1.7081 -2.1264 3.6813 20 6 1.0448 -2.7260 4.7186 21 1 0.4000 -3.5717 4.5303 22 6 1.1967 -2.2432 6.0111 23 7 0.2829 -2.5026 6.9222 24 14 2.6980 -1.2251 6.4575 25 1 2.4073 0.2128 6.2271 26 1 3.0337 -1.4394 7.8882 27 1 3.8463 -1.6397 5.6121 28 6 2.0764 -2.8949 2.4845 29 6 1.5310 -2.1645 1.2479 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6318 -1.1526 34 1 1.0568 -2.1709 -3.7510 35 1 0.6980 -0.5890 -4.4908 36 1 1.1607 -2.4249 -6.1797 37 1 2.8219 -2.5172 -5.5410 38 1 1.4617 -0.1305 -6.8608 39 1 2.8891 -1.0225 -7.4370 40 1 5.2471 0.8443 -3.7953 41 1 4.1713 2.1508 -4.3468 42 1 3.8903 1.3721 -2.7711 43 1 3.1300 -0.7207 1.2492 44 1 0.4401 -0.0213 2.5117 45 1 1.8728 1.0350 2.4874 46 1 1.6314 -0.2559 4.6383 47 1 3.1552 -0.6046 3.7843 48 1 0.3889 -2.1649 7.8253 49 1 3.1618 -2.9704 2.4184 50 1 1.6416 -3.8926 2.5426 51 1 0.4412 -2.1658 1.2729 52 1 1.8749 -2.6707 0.3461 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997846487.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:27 Heat of formation + Delta-G solvation = -49.701067 kcal Electronic energy + Delta-G solvation = -30760.233583 eV Core-core repulsion = 26760.146265 eV Total energy + Delta-G solvation = -4000.087318 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.36235 -39.85240 -38.43639 -36.62327 -35.64047 -34.39134 -33.07673 -31.63845 -30.53981 -30.27568 -29.09463 -27.43782 -25.83510 -25.30745 -23.41984 -22.87330 -22.72575 -21.17046 -20.64266 -19.19246 -18.87835 -17.89065 -17.05841 -16.83976 -16.75340 -16.13529 -15.71650 -15.11326 -15.06873 -14.74667 -14.65766 -14.36491 -14.11799 -14.01099 -13.89166 -13.62750 -13.47661 -13.04406 -12.89785 -12.69030 -12.50223 -12.27337 -12.24238 -12.02338 -11.91786 -11.82666 -11.76208 -11.51534 -11.46016 -11.13927 -10.74070 -10.68543 -10.52097 -10.38977 -10.19631 -9.96276 -9.86313 -9.67899 -9.48508 -9.28317 -9.00019 -8.63786 -7.01906 -5.99855 -3.35366 2.13626 2.27116 2.61055 2.97104 3.28272 3.45194 3.47680 4.06416 4.10397 4.17001 4.27274 4.48945 4.51845 4.65717 4.79688 4.88404 4.90543 4.95220 5.10234 5.12264 5.18824 5.23108 5.33339 5.34618 5.34650 5.41104 5.43025 5.46984 5.61708 5.63410 5.71088 5.79405 5.80814 5.91535 5.96040 6.00612 6.06155 6.15241 6.24456 6.36978 6.39541 6.41610 6.55769 6.62434 6.64965 6.92102 7.04227 7.24493 7.80705 7.92147 7.92521 8.28636 8.89975 9.67898 10.05894 11.16128 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026595 B = 0.002388 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.572788 B =11720.302542 C =12057.025487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 H 0.085 0.915 4 N -0.715 5.715 5 C 0.503 3.497 6 O -0.527 6.527 7 C 0.127 3.873 8 H 0.096 0.904 9 C -0.128 4.128 10 C -0.121 4.121 11 C -0.136 4.136 12 C 0.519 3.481 13 O -0.551 6.551 14 N -0.586 5.586 15 C 0.075 3.925 16 C -0.087 4.087 17 C -0.127 4.127 18 C 0.126 3.874 19 N -0.605 5.605 20 C -0.261 4.261 21 H 0.084 0.916 22 C 0.024 3.976 23 N -0.907 5.907 24 Si 0.882 3.118 25 H -0.287 1.287 26 H -0.303 1.303 27 H -0.273 1.273 28 C 0.148 3.852 29 C -0.131 4.131 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.401 0.599 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.053 0.947 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.055 0.945 46 H 0.074 0.926 47 H 0.022 0.978 48 H 0.263 0.737 49 H 0.020 0.980 50 H 0.063 0.937 51 H 0.070 0.930 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.457 0.533 -23.883 24.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.042 3.958 3 H 0.103 0.897 4 N -0.368 5.368 5 C 0.287 3.713 6 O -0.403 6.403 7 C 0.019 3.981 8 H 0.113 0.887 9 C -0.166 4.166 10 C -0.159 4.159 11 C -0.175 4.175 12 C 0.308 3.692 13 O -0.429 6.429 14 N -0.319 5.319 15 C -0.067 4.067 16 C -0.106 4.106 17 C -0.167 4.167 18 C 0.000 4.000 19 N -0.329 5.329 20 C -0.389 4.389 21 H 0.102 0.898 22 C -0.175 4.175 23 N -0.549 5.549 24 Si 0.712 3.288 25 H -0.215 1.215 26 H -0.231 1.231 27 H -0.198 1.198 28 C 0.022 3.978 29 C -0.170 4.170 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.237 0.763 34 H 0.112 0.888 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.073 0.927 46 H 0.092 0.908 47 H 0.040 0.960 48 H 0.073 0.927 49 H 0.038 0.962 50 H 0.081 0.919 51 H 0.089 0.911 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.526 1.791 -24.054 24.376 hybrid contribution 0.910 0.126 0.603 1.099 sum 4.436 1.918 -23.451 23.943 Atomic orbital electron populations 1.22234 0.94980 1.02605 1.02329 1.21136 0.94518 0.96914 0.83223 0.89703 1.46260 1.66597 1.14326 1.09572 1.20647 0.78386 0.87679 0.84554 1.90746 1.49162 1.15665 1.84706 1.20983 0.95714 0.91548 0.89865 0.88661 1.21876 0.96237 1.01640 0.96822 1.21667 1.02388 0.97204 0.94625 1.21691 1.00468 0.96193 0.99176 1.20152 0.82778 0.84718 0.81589 1.90727 1.45413 1.39377 1.67432 1.46908 1.45572 1.33622 1.05789 1.21847 0.92908 0.92748 0.99218 1.21327 1.00116 0.95942 0.93188 1.22078 1.01786 0.97868 0.94919 1.21333 0.96669 0.85372 0.96599 1.44354 1.67271 1.04020 1.17232 1.18896 1.19886 1.15251 0.84882 0.89795 1.25290 0.97792 0.98740 0.95678 1.69846 1.32912 1.48124 1.04058 0.86986 0.85701 0.79539 0.76569 1.21488 1.23140 1.19796 1.20994 0.96251 0.94677 0.85877 1.22201 1.01715 0.94650 0.98417 0.91863 0.90918 0.92864 0.76300 0.88759 0.89972 0.89703 0.90633 0.88036 0.87924 0.92827 0.90461 0.90064 0.91237 0.91001 0.92673 0.90752 0.95997 0.92741 0.96162 0.91888 0.91134 0.93365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 8.78 37.16 0.33 -1.56 16 2 C 0.15 1.66 2.40 -67.93 -0.16 1.50 16 3 H 0.08 1.09 7.58 -51.93 -0.39 0.70 16 4 N -0.72 -6.48 5.00 -53.80 -0.27 -6.74 16 5 C 0.50 5.08 5.76 -10.99 -0.06 5.02 16 6 O -0.53 -7.39 14.51 5.55 0.08 -7.31 16 7 C 0.13 0.96 3.13 -69.53 -0.22 0.74 16 8 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 9 C -0.13 -0.70 5.29 -26.59 -0.14 -0.84 16 10 C -0.12 -0.52 6.03 -26.51 -0.16 -0.68 16 11 C -0.14 -0.89 6.03 -28.10 -0.17 -1.06 16 12 C 0.52 5.66 7.47 -11.87 -0.09 5.57 16 13 O -0.55 -8.21 16.31 5.56 0.09 -8.12 16 14 N -0.59 -5.94 2.95 -176.52 -0.52 -6.46 16 15 C 0.08 0.82 9.48 59.84 0.57 1.39 16 16 C -0.09 -1.12 2.14 -90.58 -0.19 -1.32 16 17 C -0.13 -2.02 4.97 -26.61 -0.13 -2.15 16 18 C 0.13 2.58 4.22 -3.71 -0.02 2.56 16 19 N -0.60 -13.45 2.75 -172.05 -0.47 -13.92 16 20 C -0.26 -7.00 10.02 -15.06 -0.15 -7.15 16 21 H 0.08 2.41 8.06 -52.49 -0.42 1.98 16 22 C 0.02 0.68 5.20 -17.43 -0.09 0.59 16 23 N -0.91 -27.20 13.97 55.49 0.78 -26.42 16 24 Si 0.88 21.86 24.39 -169.99 -4.15 17.71 16 25 H -0.29 -6.85 6.51 56.52 0.37 -6.48 16 26 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 27 H -0.27 -6.67 6.89 56.52 0.39 -6.28 16 28 C 0.15 2.60 6.54 -3.49 -0.02 2.57 16 29 C -0.13 -1.73 4.83 -26.39 -0.13 -1.86 16 30 H 0.06 0.71 6.46 -51.93 -0.34 0.37 16 31 H 0.07 0.89 6.46 -51.93 -0.34 0.55 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.40 2.75 6.84 -40.82 -0.28 2.47 16 34 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 36 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.07 0.28 8.13 -51.93 -0.42 -0.14 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.96 7.39 -51.93 -0.38 0.57 16 42 H 0.08 0.92 5.42 -51.93 -0.28 0.64 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.07 1.19 6.51 -51.93 -0.34 0.85 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.07 1.71 4.55 -51.93 -0.24 1.47 16 47 H 0.02 0.45 7.22 -51.93 -0.38 0.08 16 48 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 49 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 51 H 0.07 1.01 6.51 -51.92 -0.34 0.67 16 52 H 0.05 0.47 6.46 -51.93 -0.34 0.14 16 LS Contribution 386.02 15.07 5.82 5.82 Total: -1.00 -34.35 386.02 -8.20 -42.56 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -8.72 Total: -0.43 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -0.84 Total: 3.31 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -0.49 Total: -53.55 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: 0.17 Total: -15.43 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.15 Total: 17.71 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.35 -8.20 -42.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997846487.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.142 kcal (2) G-P(sol) polarization free energy of solvation -34.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds