Wall clock time and date at job start Tue Mar 31 2020 21:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46768 * 2 1 4 4 N 1.46503 * 109.46757 * 240.00004 * 2 1 3 5 5 C 1.34778 * 120.00261 * 85.00539 * 4 2 1 6 6 O 1.21288 * 119.99741 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00132 * 179.97438 * 5 4 2 8 8 H 1.08994 * 109.29808 * 329.20119 * 7 5 4 9 9 C 1.52923 * 109.29592 * 88.58200 * 7 5 4 10 10 C 1.53351 * 108.67150 * 171.06486 * 9 7 5 11 11 C 1.53076 * 108.42457 * 292.46874 * 10 9 7 12 12 C 1.50172 * 109.88954 * 48.89811 * 11 10 9 13 13 O 1.21282 * 118.24374 * 162.39304 * 12 11 10 14 14 N 1.33359 * 123.51403 * 342.42190 * 12 11 10 15 15 C 1.46492 * 117.94908 * 182.24537 * 14 12 11 16 16 C 1.52997 * 109.47373 * 120.00054 * 2 1 3 17 17 C 1.53049 * 109.45609 * 300.00203 * 16 2 1 18 18 C 1.53195 * 109.30910 * 181.37337 * 17 16 2 19 19 N 1.46928 * 108.77204 * 305.36126 * 18 17 16 20 20 C 1.36945 * 120.62762 * 233.58626 * 19 18 17 21 21 H 1.08000 * 119.99456 * 152.06032 * 20 19 18 22 22 C 1.38804 * 120.00196 * 332.33190 * 20 19 18 23 23 N 1.31621 * 120.00247 * 158.30348 * 22 20 19 24 24 Si 1.86806 * 120.00096 * 338.31244 * 22 20 19 25 25 H 1.48498 * 109.47200 * 90.29596 * 24 22 20 26 26 H 1.48505 * 109.46901 * 210.29791 * 24 22 20 27 27 H 1.48499 * 109.46916 * 330.29660 * 24 22 20 28 28 C 1.46924 * 118.74253 * 53.86472 * 19 18 17 29 29 C 1.53040 * 109.44908 * 60.06023 * 16 2 1 30 30 H 1.09000 * 109.46768 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47027 * 299.99787 * 1 2 3 32 32 H 1.08998 * 109.47027 * 60.00164 * 1 2 3 33 33 H 0.97002 * 119.99502 * 264.99170 * 4 2 1 34 34 H 1.08996 * 109.60273 * 290.81852 * 9 7 5 35 35 H 1.08998 * 109.60589 * 51.31145 * 9 7 5 36 36 H 1.08999 * 109.67523 * 172.73296 * 10 9 7 37 37 H 1.09005 * 109.70095 * 52.21799 * 10 9 7 38 38 H 1.08993 * 109.39839 * 288.76990 * 11 10 9 39 39 H 1.08998 * 109.32975 * 168.98482 * 11 10 9 40 40 H 1.09005 * 109.47397 * 275.21005 * 15 14 12 41 41 H 1.08997 * 109.47542 * 35.21298 * 15 14 12 42 42 H 1.09000 * 109.47259 * 155.21293 * 15 14 12 43 43 H 1.08994 * 109.46171 * 180.02562 * 16 2 1 44 44 H 1.08996 * 109.49918 * 61.41764 * 17 16 2 45 45 H 1.09000 * 109.52314 * 301.33678 * 17 16 2 46 46 H 1.09002 * 109.58238 * 185.57708 * 18 17 16 47 47 H 1.09000 * 109.70793 * 65.22024 * 18 17 16 48 48 H 0.96997 * 120.00008 * 180.02562 * 23 22 20 49 49 H 1.09003 * 109.58372 * 65.92521 * 28 19 18 50 50 H 1.08993 * 109.59092 * 186.34879 * 28 19 18 51 51 H 1.09009 * 109.49730 * 298.57535 * 29 16 2 52 52 H 1.08994 * 109.49745 * 58.64090 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1471 -0.0183 -2.3572 6 8 1.8583 1.1584 -2.4117 7 6 2.6499 -0.7286 -3.5875 8 1 3.3374 -1.5205 -3.2906 9 6 1.4664 -1.3459 -4.3337 10 6 1.9589 -1.8680 -5.6889 11 6 2.3578 -0.6693 -6.5532 12 6 3.2492 0.2512 -5.7700 13 8 3.9127 1.0633 -6.3792 14 7 3.3506 0.2230 -4.4406 15 6 4.2205 1.2108 -3.7973 16 6 2.0401 -0.7212 1.2492 17 6 1.5297 0.0005 2.4986 18 6 2.0704 -0.7040 3.7469 19 7 1.7081 -2.1264 3.6813 20 6 1.0448 -2.7260 4.7186 21 1 0.4000 -3.5717 4.5303 22 6 1.1967 -2.2432 6.0111 23 7 0.2829 -2.5026 6.9222 24 14 2.6980 -1.2251 6.4575 25 1 2.4073 0.2128 6.2271 26 1 3.0337 -1.4394 7.8882 27 1 3.8463 -1.6397 5.6121 28 6 2.0764 -2.8949 2.4845 29 6 1.5310 -2.1645 1.2479 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 2.2491 -1.6318 -1.1526 34 1 1.0568 -2.1709 -3.7510 35 1 0.6980 -0.5890 -4.4908 36 1 1.1607 -2.4249 -6.1797 37 1 2.8219 -2.5172 -5.5410 38 1 1.4617 -0.1305 -6.8608 39 1 2.8891 -1.0225 -7.4370 40 1 5.2471 0.8443 -3.7953 41 1 4.1713 2.1508 -4.3468 42 1 3.8903 1.3721 -2.7711 43 1 3.1300 -0.7207 1.2492 44 1 0.4401 -0.0213 2.5117 45 1 1.8728 1.0350 2.4874 46 1 1.6314 -0.2559 4.6383 47 1 3.1552 -0.6046 3.7843 48 1 0.3889 -2.1649 7.8253 49 1 3.1618 -2.9704 2.4184 50 1 1.6416 -3.8926 2.5426 51 1 0.4412 -2.1658 1.2729 52 1 1.8749 -2.6707 0.3461 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997846487.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:26 Heat of formation + Delta-G solvation = -74.212527 kcal Electronic energy + Delta-G solvation = -30761.296480 eV Core-core repulsion = 26760.146265 eV Total energy + Delta-G solvation = -4001.150215 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.11389 -40.77477 -39.62443 -37.47241 -36.82784 -35.04868 -34.50599 -33.18092 -31.83327 -31.30430 -30.13325 -28.17276 -27.11318 -26.24102 -24.82662 -24.19450 -23.25861 -22.50784 -21.61452 -20.27603 -19.64713 -18.84174 -18.47830 -17.79366 -17.59589 -17.29496 -16.80501 -16.33270 -16.00330 -15.88509 -15.57977 -15.28177 -15.24241 -15.07077 -14.91153 -14.73951 -14.46457 -14.39770 -14.02318 -13.87292 -13.56754 -13.51559 -13.22670 -13.15477 -12.96541 -12.89813 -12.62550 -12.52651 -12.30704 -12.15383 -11.99976 -11.96965 -11.84315 -11.68690 -11.53763 -11.27043 -11.14435 -11.02222 -10.70498 -10.61845 -10.14150 -9.80735 -8.87704 -8.15182 -5.44808 1.30459 1.37457 1.41405 1.48934 1.49915 1.88271 2.21188 2.42908 3.08067 3.40652 3.45566 3.55854 3.66467 3.77409 3.85619 3.87163 3.97774 4.04107 4.20712 4.30081 4.32370 4.39937 4.47755 4.51141 4.55686 4.56960 4.59019 4.74000 4.78088 4.80650 4.82243 4.85022 4.93254 4.96387 4.99355 5.04405 5.06122 5.13084 5.17680 5.23661 5.23965 5.30208 5.30991 5.35287 5.50799 5.68656 5.91241 6.16010 6.30270 6.52341 6.96738 7.02977 7.18719 7.67417 8.07911 9.04873 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.026595 B = 0.002388 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.572788 B =11720.302542 C =12057.025487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.159 3.841 3 H 0.072 0.928 4 N -0.701 5.701 5 C 0.505 3.495 6 O -0.570 6.570 7 C 0.126 3.874 8 H 0.131 0.869 9 C -0.126 4.126 10 C -0.112 4.112 11 C -0.132 4.132 12 C 0.509 3.491 13 O -0.603 6.603 14 N -0.588 5.588 15 C 0.078 3.922 16 C -0.076 4.076 17 C -0.121 4.121 18 C 0.120 3.880 19 N -0.620 5.620 20 C -0.243 4.243 21 H 0.053 0.947 22 C -0.037 4.037 23 N -0.957 5.957 24 Si 0.943 3.057 25 H -0.275 1.275 26 H -0.315 1.315 27 H -0.263 1.263 28 C 0.139 3.861 29 C -0.119 4.119 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.416 0.584 34 H 0.123 0.877 35 H 0.065 0.935 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.062 0.938 45 H 0.072 0.928 46 H 0.044 0.956 47 H 0.029 0.971 48 H 0.260 0.740 49 H 0.035 0.965 50 H 0.055 0.945 51 H 0.061 0.939 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.494 -0.760 -26.373 26.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.054 3.946 3 H 0.090 0.910 4 N -0.355 5.355 5 C 0.291 3.709 6 O -0.449 6.449 7 C 0.019 3.981 8 H 0.148 0.852 9 C -0.164 4.164 10 C -0.149 4.149 11 C -0.172 4.172 12 C 0.300 3.700 13 O -0.485 6.485 14 N -0.320 5.320 15 C -0.065 4.065 16 C -0.096 4.096 17 C -0.161 4.161 18 C -0.005 4.005 19 N -0.345 5.345 20 C -0.372 4.372 21 H 0.071 0.929 22 C -0.231 4.231 23 N -0.604 5.604 24 Si 0.772 3.228 25 H -0.202 1.202 26 H -0.244 1.244 27 H -0.188 1.188 28 C 0.015 3.985 29 C -0.158 4.158 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.255 0.745 34 H 0.141 0.859 35 H 0.083 0.917 36 H 0.127 0.873 37 H 0.107 0.893 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.063 0.937 47 H 0.047 0.953 48 H 0.069 0.931 49 H 0.053 0.947 50 H 0.074 0.926 51 H 0.079 0.921 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.580 0.459 -26.579 26.975 hybrid contribution 0.545 0.503 1.332 1.524 sum 5.125 0.962 -25.248 25.780 Atomic orbital electron populations 1.22179 0.95125 1.02818 1.01576 1.20796 0.94193 0.96255 0.83369 0.91018 1.46041 1.66001 1.14889 1.08524 1.21092 0.77415 0.87132 0.85255 1.90744 1.51033 1.17776 1.85374 1.21290 0.97161 0.91173 0.88446 0.85179 1.21962 0.94804 1.01916 0.97727 1.21679 1.03701 0.96131 0.93385 1.21756 0.99667 0.96411 0.99332 1.21020 0.82556 0.84661 0.81795 1.90698 1.47662 1.41660 1.68474 1.47064 1.45238 1.33630 1.06044 1.21733 0.93927 0.92377 0.98488 1.21203 1.00554 0.95459 0.92337 1.21963 1.01120 0.98723 0.94260 1.21364 0.96862 0.84603 0.97666 1.44518 1.67285 1.05232 1.17449 1.18875 1.18516 1.13678 0.86169 0.92883 1.25893 1.00197 1.01120 0.95905 1.69976 1.34929 1.51069 1.04414 0.85983 0.82475 0.78855 0.75465 1.20216 1.24367 1.18786 1.21251 0.97195 0.94485 0.85560 1.22084 1.01043 0.94554 0.98096 0.91109 0.91974 0.93382 0.74482 0.85905 0.91655 0.87258 0.89256 0.87557 0.86976 0.91655 0.92902 0.90494 0.90227 0.91965 0.90948 0.93737 0.95314 0.93132 0.94711 0.92598 0.92073 0.88701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.31 8.78 71.98 0.63 -2.68 16 2 C 0.16 3.12 2.40 44.99 0.11 3.23 16 3 H 0.07 1.68 7.58 -2.39 -0.02 1.67 16 4 N -0.70 -9.84 5.00 -442.52 -2.21 -12.05 16 5 C 0.51 8.73 5.76 87.66 0.51 9.24 16 6 O -0.57 -15.28 14.51 -3.05 -0.04 -15.33 16 7 C 0.13 1.45 3.13 44.36 0.14 1.59 16 8 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 9 C -0.13 -0.85 5.29 30.69 0.16 -0.69 16 10 C -0.11 -0.46 6.03 30.74 0.19 -0.28 16 11 C -0.13 -1.42 6.03 29.71 0.18 -1.24 16 12 C 0.51 10.57 7.47 87.71 0.65 11.22 16 13 O -0.60 -18.22 16.31 -3.03 -0.05 -18.27 16 14 N -0.59 -10.93 2.95 -831.55 -2.45 -13.38 16 15 C 0.08 1.66 9.48 127.77 1.21 2.87 16 16 C -0.08 -1.71 2.14 -10.77 -0.02 -1.74 16 17 C -0.12 -3.60 4.97 30.68 0.15 -3.45 16 18 C 0.12 4.73 4.22 86.36 0.36 5.10 16 19 N -0.62 -26.89 2.75 -698.25 -1.92 -28.82 16 20 C -0.24 -13.19 10.02 84.03 0.84 -12.35 16 21 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 22 C -0.04 -2.09 5.20 84.86 0.44 -1.65 16 23 N -0.96 -59.40 13.97 21.65 0.30 -59.10 16 24 Si 0.94 45.80 24.39 68.60 1.67 47.47 16 25 H -0.28 -12.68 6.51 99.48 0.65 -12.03 16 26 H -0.31 -15.71 7.11 99.48 0.71 -15.01 16 27 H -0.26 -12.19 6.89 99.48 0.69 -11.50 16 28 C 0.14 4.52 6.54 86.51 0.57 5.09 16 29 C -0.12 -2.68 4.83 30.82 0.15 -2.53 16 30 H 0.07 1.37 6.46 -2.39 -0.02 1.35 16 31 H 0.06 1.43 6.46 -2.39 -0.02 1.41 16 32 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.42 3.31 6.84 -92.71 -0.63 2.68 16 34 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.06 0.71 8.10 -2.39 -0.02 0.69 16 36 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 37 H 0.09 0.19 8.13 -2.38 -0.02 0.18 16 38 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.05 1.37 7.39 -2.39 -0.02 1.35 16 42 H 0.08 1.70 5.42 -2.39 -0.01 1.68 16 43 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.06 1.98 6.51 -2.39 -0.02 1.96 16 45 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.04 2.01 4.55 -2.39 -0.01 2.00 16 47 H 0.03 1.10 7.22 -2.39 -0.02 1.09 16 48 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 49 H 0.03 1.05 8.14 -2.39 -0.02 1.04 16 50 H 0.06 1.87 7.93 -2.39 -0.02 1.85 16 51 H 0.06 1.55 6.51 -2.38 -0.02 1.53 16 52 H 0.09 1.29 6.46 -2.39 -0.02 1.28 16 Total: -1.00 -79.89 386.02 1.77 -78.12 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.21 Total: 9.63 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 6.27 Total: 11.73 kcal Atomic # 7 Polarization: -107.06 SS G_CDS: -6.28 Total: -113.35 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -0.09 Total: -33.60 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 1.67 Total: 47.47 kcal Total: -79.89 1.77 -78.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997846487.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.908 kcal (2) G-P(sol) polarization free energy of solvation -79.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds