Wall clock time and date at job start Tue Mar 31 2020 21:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47345 * 2 1 4 4 N 1.46502 * 109.47342 * 239.99833 * 2 1 3 5 5 C 1.34781 * 119.99609 * 84.99775 * 4 2 1 6 6 O 1.21274 * 120.00050 * 0.02562 * 5 4 2 7 7 C 1.50701 * 119.99765 * 180.02562 * 5 4 2 8 8 H 1.09006 * 109.30028 * 40.41663 * 7 5 4 9 9 C 1.52923 * 109.30047 * 281.04074 * 7 5 4 10 10 C 1.53346 * 108.67263 * 188.93602 * 9 7 5 11 11 C 1.53064 * 108.42576 * 67.53245 * 10 9 7 12 12 C 1.50180 * 109.89020 * 311.09190 * 11 10 9 13 13 O 1.21281 * 118.24937 * 197.55705 * 12 11 10 14 14 N 1.33357 * 123.50520 * 17.59407 * 12 11 10 15 15 C 1.46502 * 117.94370 * 177.79629 * 14 12 11 16 16 C 1.52998 * 109.47011 * 120.00338 * 2 1 3 17 17 C 1.53039 * 109.46172 * 179.97438 * 16 2 1 18 18 C 1.53189 * 109.31545 * 181.38232 * 17 16 2 19 19 N 1.46927 * 108.77733 * 305.36270 * 18 17 16 20 20 C 1.36936 * 120.63241 * 233.58639 * 19 18 17 21 21 H 1.08007 * 119.99801 * 151.83235 * 20 19 18 22 22 C 1.38813 * 120.00005 * 331.83410 * 20 19 18 23 23 N 1.31615 * 119.99942 * 343.07472 * 22 20 19 24 24 Si 1.86799 * 119.99873 * 163.07730 * 22 20 19 25 25 H 1.48507 * 109.47204 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47370 * 119.99983 * 24 22 20 27 27 H 1.48501 * 109.46966 * 239.99949 * 24 22 20 28 28 C 1.46931 * 118.73334 * 53.60640 * 19 18 17 29 29 C 1.53041 * 109.45854 * 299.99644 * 16 2 1 30 30 H 1.09000 * 109.46759 * 60.00329 * 1 2 3 31 31 H 1.09003 * 109.47120 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47167 * 300.00180 * 1 2 3 33 33 H 0.97002 * 120.00418 * 265.00905 * 4 2 1 34 34 H 1.08998 * 109.60106 * 308.69232 * 9 7 5 35 35 H 1.09000 * 109.60472 * 69.17664 * 9 7 5 36 36 H 1.09000 * 109.67264 * 307.79263 * 10 9 7 37 37 H 1.09009 * 109.70319 * 187.28254 * 10 9 7 38 38 H 1.09008 * 109.39679 * 190.97360 * 11 10 9 39 39 H 1.08997 * 109.40501 * 71.22734 * 11 10 9 40 40 H 1.08995 * 109.46850 * 269.97189 * 15 14 12 41 41 H 1.08997 * 109.47216 * 29.97216 * 15 14 12 42 42 H 1.09002 * 109.46773 * 149.97846 * 15 14 12 43 43 H 1.09000 * 109.46613 * 59.96873 * 16 2 1 44 44 H 1.08999 * 109.50013 * 61.42990 * 17 16 2 45 45 H 1.09003 * 109.49846 * 301.33514 * 17 16 2 46 46 H 1.09004 * 109.58810 * 185.57510 * 18 17 16 47 47 H 1.09003 * 109.58627 * 65.15012 * 18 17 16 48 48 H 0.96999 * 119.99981 * 179.97438 * 23 22 20 49 49 H 1.09004 * 109.58647 * 66.18352 * 28 19 18 50 50 H 1.09004 * 109.58046 * 186.46145 * 28 19 18 51 51 H 1.08997 * 109.49821 * 58.66597 * 29 16 2 52 52 H 1.09002 * 109.52643 * 298.58292 * 29 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3571 6 8 1.8590 1.1585 -2.4115 7 6 2.6489 -0.7288 -3.5877 8 1 2.2066 -1.7239 -3.6347 9 6 4.1706 -0.8599 -3.5105 10 6 4.6878 -1.3775 -4.8581 11 6 4.4622 -0.2911 -5.9125 12 6 3.0507 0.2153 -5.8304 13 8 2.6050 0.8287 -6.7770 14 7 2.2615 0.0271 -4.7721 15 6 0.9206 0.6166 -4.8022 16 6 2.0400 -0.7213 1.2492 17 6 3.5704 -0.7218 1.2487 18 6 4.0773 -1.4746 2.4827 19 7 3.4745 -0.8770 3.6820 20 6 4.2602 -0.4515 4.7197 21 1 3.9248 0.3543 5.3559 22 6 5.4878 -1.0557 4.9538 23 7 5.7576 -2.2271 4.4179 24 14 6.7568 -0.2062 6.0296 25 1 6.2127 1.0906 6.5071 26 1 7.0751 -1.0692 7.1954 27 1 7.9918 0.0360 5.2412 28 6 2.0126 -0.7450 3.7468 29 6 1.5297 0.0003 2.4986 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.2490 -1.6319 -1.1527 34 1 4.6113 0.1144 -3.2994 35 1 4.4375 -1.5632 -2.7217 36 1 4.1435 -2.2795 -5.1381 37 1 5.7522 -1.6000 -4.7823 38 1 4.6406 -0.7067 -6.9043 39 1 5.1534 0.5331 -5.7369 40 1 0.9562 1.6217 -4.3819 41 1 0.5684 0.6659 -5.8325 42 1 0.2398 0.0009 -4.2144 43 1 1.6761 -1.7488 1.2493 44 1 3.9345 0.3053 1.2741 45 1 3.9338 -1.2148 0.3470 46 1 5.1628 -1.3933 2.5401 47 1 3.7905 -2.5240 2.4139 48 1 6.6156 -2.6491 4.5812 49 1 1.5575 -1.7349 3.7811 50 1 1.7356 -0.1844 4.6397 51 1 0.4400 0.0214 2.4870 52 1 1.9132 1.0206 2.5122 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997846488.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:32 Heat of formation + Delta-G solvation = -59.362738 kcal Electronic energy + Delta-G solvation = -30837.640739 eV Core-core repulsion = 26837.134459 eV Total energy + Delta-G solvation = -4000.506280 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.22643 -39.67308 -38.09005 -36.50553 -35.45557 -34.26692 -33.04215 -31.42600 -30.29743 -30.06989 -28.75819 -27.33337 -25.71302 -25.22739 -23.18137 -22.60997 -22.04633 -21.03646 -20.54057 -19.23681 -18.93803 -17.69901 -16.97615 -16.75638 -16.70707 -15.82240 -15.56673 -15.11317 -14.90071 -14.56783 -14.40452 -14.08834 -13.85578 -13.68257 -13.57113 -13.43947 -13.39054 -13.04667 -12.69859 -12.46880 -12.37841 -12.32580 -12.19262 -11.89624 -11.72851 -11.55257 -11.43032 -11.32542 -11.27260 -11.01043 -10.73434 -10.47828 -10.34259 -10.25461 -10.20791 -9.94341 -9.83287 -9.57488 -9.52995 -9.06988 -8.85937 -8.50903 -6.70246 -5.82878 -3.24964 2.32459 2.36105 2.67170 3.09402 3.34077 3.42551 3.44702 4.16866 4.22702 4.28513 4.38631 4.46677 4.63017 4.76978 4.89946 4.98516 5.14423 5.17999 5.25048 5.30713 5.34374 5.34671 5.44224 5.46401 5.48328 5.54615 5.56521 5.65924 5.74635 5.75001 5.85357 5.91792 6.02304 6.03706 6.06651 6.20631 6.26017 6.37082 6.50591 6.55680 6.62920 6.72092 6.78551 6.94269 7.13044 7.31075 7.39246 7.59928 7.76625 7.89818 8.06679 8.41735 9.18200 9.81583 10.38007 11.25562 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016180 B = 0.002700 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.152507 B =10368.723220 C =11557.301705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.145 3.855 3 H 0.086 0.914 4 N -0.713 5.713 5 C 0.504 3.496 6 O -0.528 6.528 7 C 0.127 3.873 8 H 0.097 0.903 9 C -0.130 4.130 10 C -0.121 4.121 11 C -0.136 4.136 12 C 0.519 3.481 13 O -0.554 6.554 14 N -0.587 5.587 15 C 0.081 3.919 16 C -0.084 4.084 17 C -0.133 4.133 18 C 0.172 3.828 19 N -0.592 5.592 20 C -0.250 4.250 21 H 0.065 0.935 22 C 0.002 3.998 23 N -0.903 5.903 24 Si 0.900 3.100 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.289 1.289 28 C 0.146 3.854 29 C -0.126 4.126 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.401 0.599 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.054 0.946 45 H 0.046 0.954 46 H 0.086 0.914 47 H 0.016 0.984 48 H 0.253 0.747 49 H 0.016 0.984 50 H 0.053 0.947 51 H 0.055 0.945 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.643 -1.550 -17.082 18.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.104 0.896 4 N -0.364 5.364 5 C 0.288 3.712 6 O -0.403 6.403 7 C 0.019 3.981 8 H 0.115 0.885 9 C -0.168 4.168 10 C -0.159 4.159 11 C -0.176 4.176 12 C 0.308 3.692 13 O -0.433 6.433 14 N -0.319 5.319 15 C -0.061 4.061 16 C -0.103 4.103 17 C -0.172 4.172 18 C 0.046 3.954 19 N -0.315 5.315 20 C -0.380 4.380 21 H 0.083 0.917 22 C -0.197 4.197 23 N -0.548 5.548 24 Si 0.730 3.270 25 H -0.203 1.203 26 H -0.217 1.217 27 H -0.216 1.216 28 C 0.019 3.981 29 C -0.165 4.165 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.235 0.765 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.064 0.936 46 H 0.104 0.896 47 H 0.034 0.966 48 H 0.063 0.937 49 H 0.034 0.966 50 H 0.072 0.928 51 H 0.073 0.927 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.927 -0.462 -17.568 18.890 hybrid contribution 0.798 -0.177 0.758 1.115 sum -6.129 -0.639 -16.810 17.904 Atomic orbital electron populations 1.22203 0.95583 1.01902 1.02306 1.21182 0.93542 0.97620 0.83556 0.89607 1.46101 1.66604 1.14152 1.09592 1.20639 0.78291 0.87661 0.84652 1.90722 1.49443 1.15586 1.84583 1.20972 0.97561 0.95305 0.84231 0.88543 1.21901 0.91398 1.04055 0.99419 1.21661 1.02873 0.98031 0.93300 1.21695 0.93404 1.00497 1.01966 1.20151 0.87949 0.79566 0.81545 1.90714 1.74305 1.42106 1.36140 1.46902 1.16055 1.53216 1.15763 1.21756 0.82009 0.99615 1.02714 1.21333 0.97264 0.99009 0.92706 1.22221 0.93545 1.01588 0.99853 1.20757 0.99414 0.92623 0.82620 1.44060 0.99527 1.72027 1.15912 1.19231 0.99440 1.11676 1.07673 0.91716 1.25032 1.00086 0.95310 0.99252 1.70033 1.22880 1.13965 1.47921 0.86250 0.81721 0.79105 0.79876 1.20256 1.21735 1.21573 1.20894 0.86106 0.96412 0.94682 1.22077 0.98729 1.00012 0.95716 0.92785 0.92634 0.91064 0.76505 0.89965 0.88526 0.90716 0.89645 0.87977 0.88032 0.90925 0.90619 0.92019 0.91448 0.92726 0.93570 0.89593 0.96609 0.93744 0.96576 0.92804 0.92684 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.13 37.16 0.34 -1.45 16 2 C 0.14 1.79 2.16 -67.93 -0.15 1.64 16 3 H 0.09 1.27 7.58 -51.93 -0.39 0.88 16 4 N -0.71 -7.29 4.36 -53.81 -0.23 -7.53 16 5 C 0.50 5.67 6.28 -10.98 -0.07 5.60 16 6 O -0.53 -7.97 14.00 5.56 0.08 -7.89 16 7 C 0.13 1.10 3.08 -69.53 -0.21 0.89 16 8 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 9 C -0.13 -0.93 5.29 -26.59 -0.14 -1.07 16 10 C -0.12 -0.69 6.03 -26.52 -0.16 -0.85 16 11 C -0.14 -1.05 6.03 -28.10 -0.17 -1.22 16 12 C 0.52 6.11 7.47 -11.87 -0.09 6.03 16 13 O -0.55 -8.62 16.18 5.56 0.09 -8.53 16 14 N -0.59 -6.42 2.96 -176.51 -0.52 -6.94 16 15 C 0.08 0.93 8.69 59.85 0.52 1.45 16 16 C -0.08 -1.19 1.79 -90.58 -0.16 -1.36 16 17 C -0.13 -2.24 5.22 -26.61 -0.14 -2.38 16 18 C 0.17 3.80 5.30 -3.71 -0.02 3.78 16 19 N -0.59 -14.14 2.99 -172.31 -0.52 -14.66 16 20 C -0.25 -6.69 9.58 -15.06 -0.14 -6.84 16 21 H 0.07 1.72 7.89 -52.48 -0.41 1.30 16 22 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 23 N -0.90 -25.40 11.20 55.49 0.62 -24.78 16 24 Si 0.90 21.28 29.59 -169.99 -5.03 16.25 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 C 0.15 2.86 6.52 -3.71 -0.02 2.84 16 29 C -0.13 -1.97 5.04 -26.61 -0.13 -2.10 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.77 6.40 -51.93 -0.33 0.44 16 33 H 0.40 3.21 8.39 -40.82 -0.34 2.87 16 34 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.37 8.13 -51.93 -0.42 -0.05 16 37 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 38 H 0.10 0.69 8.14 -51.92 -0.42 0.26 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.97 6.95 -51.93 -0.36 0.61 16 41 H 0.08 0.88 7.13 -51.93 -0.37 0.51 16 42 H 0.06 0.61 7.75 -51.93 -0.40 0.20 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.05 0.66 7.41 -51.93 -0.38 0.28 16 46 H 0.09 2.18 6.06 -51.93 -0.31 1.87 16 47 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 49 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 51 H 0.05 0.73 6.36 -51.93 -0.33 0.40 16 52 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 397.21 15.07 5.99 5.99 Total: -1.00 -33.25 397.21 -9.47 -42.72 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -9.11 Total: 0.48 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -0.84 Total: 4.91 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.65 Total: -53.91 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: 0.17 Total: -16.43 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.25 -9.47 -42.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997846488.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.642 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds