Wall clock time and date at job start Tue Mar 31 2020 21:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21287 * 119.99640 * 2 1 4 4 N 1.34778 * 120.00092 * 180.02562 * 2 1 3 5 5 C 1.47481 * 125.59053 * 359.92649 * 4 2 1 6 6 C 1.54330 * 107.03387 * 181.08701 * 5 4 2 7 7 C 1.55155 * 103.09995 * 22.23909 * 6 5 4 8 8 H 1.09000 * 111.00501 * 82.48629 * 7 6 5 9 9 C 1.50704 * 111.00413 * 206.29568 * 7 6 5 10 10 O 1.21276 * 119.99926 * 0.02562 * 9 7 6 11 11 N 1.34774 * 119.99809 * 179.97438 * 9 7 6 12 12 C 1.46503 * 120.00058 * 179.97438 * 11 9 7 13 13 H 1.09002 * 109.46832 * 325.00703 * 12 11 9 14 14 C 1.52999 * 109.46655 * 85.00159 * 12 11 9 15 15 C 1.52994 * 109.47538 * 205.00109 * 12 11 9 16 16 C 1.53037 * 109.46077 * 300.03190 * 15 12 11 17 17 C 1.53195 * 109.31290 * 178.59933 * 16 15 12 18 18 N 1.46930 * 108.76443 * 54.65219 * 17 16 15 19 19 C 1.36944 * 120.62947 * 126.36138 * 18 17 16 20 20 H 1.07995 * 120.00025 * 208.02130 * 19 18 17 21 21 C 1.38813 * 119.99845 * 28.02212 * 19 18 17 22 22 N 1.31627 * 120.00126 * 17.52394 * 21 19 18 23 23 Si 1.86798 * 120.00086 * 197.52368 * 21 19 18 24 24 H 1.48496 * 109.47401 * 94.06453 * 23 21 19 25 25 H 1.48492 * 109.47381 * 214.06996 * 23 21 19 26 26 H 1.48510 * 109.46770 * 334.06859 * 23 21 19 27 27 C 1.46920 * 118.73874 * 306.38549 * 18 17 16 28 28 C 1.53036 * 109.46207 * 179.97438 * 15 12 11 29 29 C 1.47427 * 125.64844 * 179.97438 * 4 2 1 30 30 H 1.09008 * 109.47120 * 270.00132 * 1 2 3 31 31 H 1.09001 * 109.47591 * 29.99559 * 1 2 3 32 32 H 1.09001 * 109.46971 * 150.00453 * 1 2 3 33 33 H 1.08998 * 110.03298 * 61.73059 * 5 4 2 34 34 H 1.09002 * 109.96808 * 300.40754 * 5 4 2 35 35 H 1.09003 * 110.72014 * 263.78963 * 6 5 4 36 36 H 1.08999 * 110.71930 * 140.68928 * 6 5 4 37 37 H 0.97006 * 120.00361 * 0.02562 * 11 9 7 38 38 H 1.09005 * 109.47535 * 299.99945 * 14 12 11 39 39 H 1.09003 * 109.47581 * 60.00663 * 14 12 11 40 40 H 1.09001 * 109.47226 * 180.02562 * 14 12 11 41 41 H 1.09004 * 109.45899 * 60.00076 * 15 12 11 42 42 H 1.08999 * 109.49648 * 298.55912 * 16 15 12 43 43 H 1.09002 * 109.50268 * 58.66217 * 16 15 12 44 44 H 1.09000 * 109.59854 * 294.86429 * 17 16 15 45 45 H 1.09004 * 109.70283 * 174.50195 * 17 16 15 46 46 H 0.96997 * 119.99777 * 179.97438 * 22 21 19 47 47 H 1.09000 * 109.58789 * 293.81968 * 27 18 17 48 48 H 1.09000 * 109.70305 * 173.46598 * 27 18 17 49 49 H 1.08997 * 109.49693 * 301.34012 * 28 15 12 50 50 H 1.09001 * 109.49906 * 61.40450 * 28 15 12 51 51 H 1.09004 * 110.36673 * 36.99072 * 29 4 2 52 52 H 1.09000 * 110.36706 * 274.66996 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.5714 -2.5102 0.0004 6 6 2.7281 -3.5315 0.0273 7 6 3.9082 -2.7111 0.6118 8 1 3.8587 -2.6764 1.7002 9 6 5.2318 -3.2655 0.1516 10 8 5.2629 -4.2315 -0.5809 11 7 6.3809 -2.6871 0.5533 12 6 7.6677 -3.2263 0.1064 13 1 7.5993 -4.3114 0.0277 14 6 8.0203 -2.6370 -1.2608 15 6 8.7548 -2.8558 1.1172 16 6 8.8500 -1.3324 1.2280 17 6 9.9149 -0.9655 2.2664 18 7 11.1769 -1.6240 1.9021 19 6 12.3301 -0.8974 1.7698 20 1 13.1080 -1.2360 1.1016 21 6 12.4992 0.2743 2.4946 22 7 11.7410 0.5147 3.5433 23 14 13.8028 1.5100 1.9817 24 1 13.1916 2.5378 1.1013 25 1 14.3668 2.1646 3.1893 26 1 14.8866 0.8097 1.2465 27 6 11.1779 -3.0766 1.6820 28 6 10.0987 -3.4198 0.6504 29 6 3.6480 -1.3123 -0.0011 30 1 -0.3634 0.0000 1.0277 31 1 -0.3634 0.8900 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 0.9745 -2.6500 -0.9008 34 1 0.9464 -2.6347 0.8847 35 1 2.9605 -3.8776 -0.9798 36 1 2.4846 -4.3729 0.6761 37 1 6.3561 -1.9141 1.1389 38 1 7.2459 -2.9011 -1.9810 39 1 8.0888 -1.5520 -1.1822 40 1 8.9775 -3.0385 -1.5936 41 1 8.5033 -3.2757 2.0912 42 1 9.1260 -0.9138 0.2602 43 1 7.8859 -0.9291 1.5379 44 1 9.5968 -1.3052 3.2521 45 1 10.0574 0.1150 2.2807 46 1 11.8594 1.3334 4.0500 47 1 10.9628 -3.5885 2.6200 48 1 12.1528 -3.3911 1.3094 49 1 10.0234 -4.5024 0.5491 50 1 10.3625 -2.9817 -0.3122 51 1 4.1061 -0.5375 0.6137 52 1 4.0333 -1.2666 -1.0197 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997846521.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:07 Heat of formation + Delta-G solvation = -60.026906 kcal Electronic energy + Delta-G solvation = -30203.658948 eV Core-core repulsion = 26203.123868 eV Total energy + Delta-G solvation = -4000.535080 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.76801 -39.71530 -38.27936 -37.21647 -35.32380 -33.07440 -32.46343 -31.04670 -30.21625 -30.01808 -29.28310 -28.52585 -25.48567 -24.46803 -23.53331 -22.58400 -22.11547 -20.56053 -20.04134 -19.68804 -18.68423 -17.77319 -17.38787 -16.71452 -16.20366 -15.97572 -15.66043 -15.11456 -14.84729 -14.56165 -14.23775 -14.08714 -13.84179 -13.76604 -13.53147 -13.30984 -13.09599 -12.97603 -12.89398 -12.67538 -12.49641 -12.43580 -12.30261 -11.93868 -11.71042 -11.60808 -11.49834 -11.27788 -11.20132 -10.84766 -10.73679 -10.50444 -10.29096 -10.17716 -10.15973 -9.95393 -9.82168 -9.57202 -9.37382 -9.08136 -9.02748 -8.46715 -6.67386 -5.79455 -3.21410 2.28185 2.39100 2.62562 3.13719 3.37691 3.45135 3.46071 3.90530 4.09983 4.42735 4.48030 4.49874 4.73510 4.79387 4.83223 4.86947 4.99359 5.03270 5.11826 5.15582 5.31496 5.33966 5.39087 5.39731 5.44778 5.51853 5.54683 5.63920 5.70096 5.72936 5.83828 5.85466 6.00658 6.11521 6.13563 6.26125 6.33407 6.44289 6.54310 6.59812 6.71604 6.75264 6.81656 6.99375 7.09793 7.35084 7.47595 7.63920 7.79729 7.79923 8.13264 8.44943 9.21304 9.84916 10.41589 11.29040 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014533 B = 0.002505 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.139194 B =11174.029416 C =12560.744346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.525 3.475 3 O -0.543 6.543 4 N -0.622 5.622 5 C 0.100 3.900 6 C -0.112 4.112 7 C -0.128 4.128 8 H 0.111 0.889 9 C 0.525 3.475 10 O -0.541 6.541 11 N -0.717 5.717 12 C 0.145 3.855 13 H 0.082 0.918 14 C -0.163 4.163 15 C -0.085 4.085 16 C -0.137 4.137 17 C 0.171 3.829 18 N -0.592 5.592 19 C -0.251 4.251 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.903 5.903 23 Si 0.901 3.099 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.279 1.279 27 C 0.146 3.854 28 C -0.126 4.126 29 C 0.118 3.882 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.402 0.598 38 H 0.050 0.950 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.062 0.938 43 H 0.042 0.958 44 H 0.016 0.984 45 H 0.086 0.914 46 H 0.253 0.747 47 H 0.016 0.984 48 H 0.054 0.946 49 H 0.051 0.949 50 H 0.064 0.936 51 H 0.088 0.912 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.867 -8.022 -6.278 25.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.315 3.685 3 O -0.419 6.419 4 N -0.358 5.358 5 C -0.023 4.023 6 C -0.151 4.151 7 C -0.150 4.150 8 H 0.129 0.871 9 C 0.310 3.690 10 O -0.418 6.418 11 N -0.368 5.368 12 C 0.041 3.959 13 H 0.100 0.900 14 C -0.221 4.221 15 C -0.104 4.104 16 C -0.176 4.176 17 C 0.045 3.955 18 N -0.314 5.314 19 C -0.381 4.381 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.547 5.547 23 Si 0.731 3.269 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.204 1.204 27 C 0.019 3.981 28 C -0.166 4.166 29 C -0.005 4.005 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.238 0.762 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.034 0.966 45 H 0.105 0.895 46 H 0.063 0.937 47 H 0.034 0.966 48 H 0.072 0.928 49 H 0.069 0.931 50 H 0.083 0.917 51 H 0.106 0.894 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -22.531 -7.926 -6.690 24.803 hybrid contribution 0.593 0.992 0.205 1.174 sum -21.938 -6.933 -6.485 23.904 Atomic orbital electron populations 1.21887 0.91172 1.04913 1.04844 1.20555 0.90457 0.81923 0.75598 1.90769 1.70744 1.30583 1.49843 1.48674 1.07043 1.06079 1.73963 1.22233 0.96543 0.81358 1.02158 1.22542 0.91817 0.96909 1.03783 1.22560 0.93625 0.96189 1.02587 0.87079 1.20072 0.85124 0.83423 0.80407 1.90692 1.87488 1.27068 1.36522 1.46284 1.05848 1.33665 1.51041 1.21128 0.81741 0.98559 0.94428 0.89964 1.22226 1.01673 1.01864 0.96296 1.21316 0.93933 0.97737 0.97458 1.22295 0.99288 0.93737 1.02256 1.20753 0.83208 0.99484 0.92027 1.44042 1.05286 1.00767 1.81340 1.19203 0.95914 1.04325 1.18634 0.91699 1.25037 0.98635 1.00625 0.95400 1.70039 1.42035 1.25865 1.16800 0.86290 0.81318 0.81688 0.77575 1.21485 1.21811 1.20407 1.20883 0.95975 0.86481 0.94744 1.22072 0.95124 0.98580 1.00781 1.22090 0.81257 0.95479 1.01678 0.88718 0.88778 0.90153 0.90740 0.90824 0.88859 0.89261 0.76208 0.93049 0.91882 0.91192 0.91445 0.91979 0.93920 0.96613 0.89539 0.93680 0.96633 0.92793 0.93068 0.91721 0.89386 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 9.90 36.00 0.36 -0.57 16 2 C 0.53 5.31 7.96 -10.99 -0.09 5.22 16 3 O -0.54 -8.11 17.36 5.55 0.10 -8.02 16 4 N -0.62 -5.37 3.34 -170.13 -0.57 -5.94 16 5 C 0.10 0.55 6.14 -2.81 -0.02 0.53 16 6 C -0.11 -0.77 6.07 -24.89 -0.15 -0.92 16 7 C -0.13 -1.07 3.43 -89.61 -0.31 -1.38 16 8 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 9 C 0.52 6.09 7.11 -10.98 -0.08 6.01 16 10 O -0.54 -8.00 15.38 5.56 0.09 -7.92 16 11 N -0.72 -8.38 5.00 -53.81 -0.27 -8.65 16 12 C 0.15 1.95 2.40 -67.93 -0.16 1.78 16 13 H 0.08 1.18 7.58 -51.93 -0.39 0.78 16 14 C -0.16 -2.17 8.78 37.16 0.33 -1.85 16 15 C -0.09 -1.30 2.14 -90.58 -0.19 -1.50 16 16 C -0.14 -2.37 4.81 -26.61 -0.13 -2.50 16 17 C 0.17 3.91 5.31 -3.71 -0.02 3.89 16 18 N -0.59 -14.43 2.99 -172.32 -0.52 -14.94 16 19 C -0.25 -6.80 9.58 -15.06 -0.14 -6.95 16 20 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 21 C 0.00 0.04 4.90 -17.43 -0.09 -0.04 16 22 N -0.90 -25.98 11.22 55.49 0.62 -25.36 16 23 Si 0.90 21.65 29.59 -169.99 -5.03 16.62 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 C 0.15 2.96 6.51 -3.71 -0.02 2.94 16 28 C -0.13 -2.06 4.97 -26.61 -0.13 -2.19 16 29 C 0.12 1.11 6.37 -2.52 -0.02 1.10 16 30 H 0.09 0.39 8.14 -51.92 -0.42 -0.03 16 31 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.27 7.12 -51.93 -0.37 -0.10 16 33 H 0.07 0.31 7.87 -51.93 -0.41 -0.10 16 34 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.09 0.78 7.39 -51.93 -0.38 0.40 16 36 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.40 4.26 6.85 -40.82 -0.28 3.98 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.87 6.46 -51.93 -0.34 0.53 16 40 H 0.07 0.93 6.46 -51.93 -0.34 0.59 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.06 1.13 6.51 -51.93 -0.34 0.79 16 43 H 0.04 0.64 6.46 -51.93 -0.34 0.30 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 2.25 6.06 -51.93 -0.31 1.93 16 46 H 0.25 7.06 8.31 -40.82 -0.34 6.73 16 47 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.05 1.08 7.94 -51.93 -0.41 0.67 16 49 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.06 1.08 6.51 -51.93 -0.34 0.74 16 51 H 0.09 0.89 8.04 -51.93 -0.42 0.48 16 52 H 0.07 0.77 8.03 -51.93 -0.42 0.36 16 LS Contribution 399.48 15.07 6.02 6.02 Total: -1.00 -33.83 399.48 -9.28 -43.10 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -8.86 Total: 1.51 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -0.87 Total: 3.58 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.73 Total: -54.90 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.18 Total: -15.93 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.83 -9.28 -43.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997846521.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.922 kcal (2) G-P(sol) polarization free energy of solvation -33.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds