Wall clock time and date at job start Tue Mar 31 2020 21:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21282 * 119.99746 * 2 1 4 4 N 1.34767 * 119.99947 * 180.02562 * 2 1 3 5 5 C 1.47422 * 125.65202 * 0.02641 * 4 2 1 6 6 C 1.54908 * 104.83523 * 204.09387 * 5 4 2 7 7 C 1.55160 * 101.57805 * 322.98713 * 6 5 4 8 8 H 1.08995 * 110.72191 * 277.13627 * 7 6 5 9 9 C 1.50703 * 110.71682 * 154.04434 * 7 6 5 10 10 O 1.21280 * 120.00588 * 359.97438 * 9 7 6 11 11 N 1.34777 * 119.99837 * 179.97438 * 9 7 6 12 12 C 1.46505 * 120.00237 * 179.97438 * 11 9 7 13 13 H 1.08997 * 109.46759 * 324.99942 * 12 11 9 14 14 C 1.52996 * 109.46928 * 85.00038 * 12 11 9 15 15 C 1.53004 * 109.46942 * 205.00301 * 12 11 9 16 16 C 1.53042 * 109.46078 * 300.02446 * 15 12 11 17 17 C 1.53188 * 109.30812 * 178.60408 * 16 15 12 18 18 N 1.46920 * 108.76734 * 54.65734 * 17 16 15 19 19 C 1.36937 * 120.63217 * 126.40206 * 18 17 16 20 20 H 1.08005 * 120.00684 * 207.66753 * 19 18 17 21 21 C 1.38816 * 119.99778 * 27.66325 * 19 18 17 22 22 N 1.31611 * 120.00237 * 17.36969 * 21 19 18 23 23 Si 1.86806 * 119.99874 * 197.36697 * 21 19 18 24 24 H 1.48499 * 109.47138 * 60.00497 * 23 21 19 25 25 H 1.48503 * 109.47020 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47102 * 299.99887 * 23 21 19 27 27 C 1.46925 * 118.73879 * 306.38104 * 18 17 16 28 28 C 1.53048 * 109.45347 * 179.97438 * 15 12 11 29 29 C 1.47029 * 125.64929 * 179.71685 * 4 2 1 30 30 H 1.08996 * 109.47009 * 239.99641 * 1 2 3 31 31 H 1.09002 * 109.47134 * 0.02562 * 1 2 3 32 32 H 1.09005 * 109.47021 * 119.99466 * 1 2 3 33 33 H 1.09005 * 110.36661 * 322.92879 * 5 4 2 34 34 H 1.09001 * 110.37113 * 85.14046 * 5 4 2 35 35 H 1.09003 * 111.00748 * 81.05961 * 6 5 4 36 36 H 1.09004 * 111.00552 * 204.91651 * 6 5 4 37 37 H 0.97003 * 119.99734 * 0.02562 * 11 9 7 38 38 H 1.08998 * 109.47022 * 180.02562 * 14 12 11 39 39 H 1.08997 * 109.47661 * 300.00571 * 14 12 11 40 40 H 1.09004 * 109.46844 * 60.00197 * 14 12 11 41 41 H 1.08994 * 109.45988 * 60.00636 * 15 12 11 42 42 H 1.08993 * 109.49664 * 298.57199 * 16 15 12 43 43 H 1.09004 * 109.49388 * 58.66473 * 16 15 12 44 44 H 1.08997 * 109.60011 * 294.86876 * 17 16 15 45 45 H 1.08999 * 109.58441 * 174.43820 * 17 16 15 46 46 H 0.97005 * 120.00555 * 179.97438 * 22 21 19 47 47 H 1.08996 * 109.58571 * 293.81554 * 27 18 17 48 48 H 1.09005 * 109.58615 * 173.39480 * 27 18 17 49 49 H 1.09002 * 109.49729 * 301.33434 * 28 15 12 50 50 H 1.08994 * 109.49870 * 61.43509 * 28 15 12 51 51 H 1.09007 * 109.87855 * 298.39718 * 29 4 2 52 52 H 1.08999 * 109.88195 * 59.55705 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1671 -0.0005 5 6 1.5730 -2.5102 -0.0017 6 6 2.6547 -3.4356 0.6094 7 6 3.9549 -2.8232 0.0248 8 1 4.1379 -3.1965 -0.9827 9 6 5.1311 -3.1142 0.9209 10 8 4.9734 -3.7508 1.9411 11 7 6.3583 -2.6669 0.5887 12 6 7.5017 -2.9493 1.4601 13 1 7.1774 -2.9360 2.5006 14 6 8.0728 -4.3277 1.1214 15 6 8.5796 -1.8844 1.2481 16 6 9.0342 -1.9028 -0.2131 17 6 10.0881 -0.8123 -0.4295 18 7 11.1732 -1.0041 0.5422 19 6 12.4742 -1.0987 0.1255 20 1 13.1893 -1.6584 0.7103 21 6 12.8741 -0.4752 -1.0485 22 7 12.1278 0.4704 -1.5786 23 14 14.4715 -0.9784 -1.8760 24 1 14.4100 -2.4175 -2.2371 25 1 14.6689 -0.1684 -3.1049 26 1 15.6050 -0.7497 -0.9444 27 6 10.8360 -1.0921 1.9695 28 6 9.7736 -2.1794 2.1590 29 6 3.6440 -1.3119 -0.0065 30 1 -0.3633 -0.5139 0.8899 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3633 -0.5138 -0.8901 33 1 0.6735 -2.5201 0.6140 34 1 1.3381 -2.8195 -1.0201 35 1 2.6500 -3.3764 1.6979 36 1 2.5228 -4.4646 0.2751 37 1 6.4844 -2.1574 -0.2271 38 1 8.9231 -4.5380 1.7700 39 1 7.3048 -5.0863 1.2723 40 1 8.3970 -4.3409 0.0808 41 1 8.1726 -0.9026 1.4895 42 1 9.4642 -2.8764 -0.4481 43 1 8.1789 -1.7161 -0.8626 44 1 9.6351 0.1682 -0.2826 45 1 10.4866 -0.8850 -1.4414 46 1 12.4074 0.9064 -2.3988 47 1 10.4442 -0.1344 2.3120 48 1 11.7281 -1.3495 2.5405 49 1 9.4447 -2.1894 3.1982 50 1 10.1966 -3.1503 1.9014 51 1 4.0569 -0.8650 -0.9109 52 1 4.0678 -0.8298 0.8744 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997846522.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:11 Heat of formation + Delta-G solvation = -82.786737 kcal Electronic energy + Delta-G solvation = -30226.292784 eV Core-core repulsion = 26224.770764 eV Total energy + Delta-G solvation = -4001.522020 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.62456 -40.65470 -39.57869 -38.11461 -36.77472 -34.56036 -33.40845 -32.50206 -31.62080 -30.77133 -30.44613 -29.41471 -27.15497 -25.47376 -24.66660 -23.98998 -23.26167 -21.94350 -20.97222 -20.40956 -20.15010 -18.72352 -18.44927 -17.98992 -17.31575 -16.89388 -16.77245 -16.46438 -15.98128 -15.74161 -15.51890 -15.44585 -15.17768 -14.80713 -14.54347 -14.48359 -14.14742 -14.10519 -13.76564 -13.67786 -13.56724 -13.24290 -13.15474 -13.01020 -12.95252 -12.88081 -12.64808 -12.53296 -12.47750 -12.38530 -12.17339 -11.95233 -11.85461 -11.71703 -11.54787 -11.22966 -11.07307 -10.98987 -10.81115 -10.51275 -10.09020 -9.75835 -8.67082 -7.86628 -5.31303 1.46936 1.48739 1.51412 1.55705 1.57312 1.93615 2.23269 2.51813 3.27292 3.29226 3.46121 3.69466 3.71916 3.83230 3.86869 3.90160 4.04308 4.16161 4.23627 4.33217 4.39313 4.43880 4.47871 4.56910 4.58000 4.61848 4.63715 4.71280 4.74496 4.78643 4.81909 4.94216 4.95653 4.97861 5.02853 5.08160 5.16884 5.20886 5.23991 5.25761 5.27526 5.33172 5.42896 5.51669 5.58577 5.67588 5.81339 6.39918 6.45991 6.52719 7.08778 7.16247 7.19789 7.88265 8.39537 9.19341 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015930 B = 0.002435 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.284353 B =11498.109354 C =12468.854018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.512 3.488 3 O -0.606 6.606 4 N -0.621 5.621 5 C 0.099 3.901 6 C -0.110 4.110 7 C -0.115 4.115 8 H 0.141 0.859 9 C 0.523 3.477 10 O -0.573 6.573 11 N -0.715 5.715 12 C 0.156 3.844 13 H 0.074 0.926 14 C -0.155 4.155 15 C -0.077 4.077 16 C -0.119 4.119 17 C 0.176 3.824 18 N -0.610 5.610 19 C -0.261 4.261 20 H 0.066 0.934 21 C -0.052 4.052 22 N -0.936 5.936 23 Si 0.966 3.034 24 H -0.277 1.277 25 H -0.295 1.295 26 H -0.277 1.277 27 C 0.140 3.860 28 C -0.115 4.115 29 C 0.115 3.885 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.409 0.591 38 H 0.071 0.929 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.068 0.932 44 H -0.010 1.010 45 H 0.054 0.946 46 H 0.249 0.751 47 H 0.007 0.993 48 H 0.053 0.947 49 H 0.076 0.924 50 H 0.067 0.933 51 H 0.078 0.922 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.563 -11.291 1.468 27.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.304 3.696 3 O -0.488 6.488 4 N -0.355 5.355 5 C -0.022 4.022 6 C -0.148 4.148 7 C -0.136 4.136 8 H 0.159 0.841 9 C 0.310 3.690 10 O -0.453 6.453 11 N -0.367 5.367 12 C 0.052 3.948 13 H 0.092 0.908 14 C -0.213 4.213 15 C -0.096 4.096 16 C -0.158 4.158 17 C 0.050 3.950 18 N -0.333 5.333 19 C -0.392 4.392 20 H 0.083 0.917 21 C -0.247 4.247 22 N -0.582 5.582 23 Si 0.794 3.206 24 H -0.203 1.203 25 H -0.221 1.221 26 H -0.203 1.203 27 C 0.014 3.986 28 C -0.154 4.154 29 C -0.008 4.008 30 H 0.130 0.870 31 H 0.106 0.894 32 H 0.134 0.866 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.088 0.912 36 H 0.131 0.869 37 H 0.246 0.754 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.008 0.992 45 H 0.072 0.928 46 H 0.058 0.942 47 H 0.025 0.975 48 H 0.072 0.928 49 H 0.095 0.905 50 H 0.086 0.914 51 H 0.096 0.904 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -25.361 -11.027 2.069 27.732 hybrid contribution 1.551 0.773 -0.788 1.903 sum -23.810 -10.255 1.281 25.956 Atomic orbital electron populations 1.21920 0.87196 1.06081 1.06571 1.21502 0.92361 0.81265 0.74466 1.90737 1.72350 1.32917 1.52757 1.48691 1.06651 1.07390 1.72778 1.22707 0.97138 0.78942 1.03371 1.22723 0.90557 1.00446 1.01116 1.22437 0.93906 0.95507 1.01799 0.84091 1.20686 0.84287 0.78165 0.85888 1.90681 1.85474 1.41611 1.27515 1.46247 1.07385 1.56041 1.27026 1.20856 0.84863 0.94765 0.94359 0.90751 1.22151 1.00942 0.95630 1.02577 1.21184 0.94551 0.97692 0.96158 1.22059 0.98207 0.99941 0.95608 1.20595 0.87291 0.93077 0.94021 1.44323 1.02781 1.84980 1.01264 1.19482 0.87624 1.24994 1.07063 0.91671 1.25777 1.01148 0.96370 1.01404 1.70184 1.40971 1.25238 1.21789 0.85367 0.79950 0.77683 0.77611 1.20279 1.22133 1.20289 1.21052 0.96715 0.95574 0.85249 1.21933 0.95082 0.99463 0.98947 1.21721 0.82375 0.94842 1.01910 0.87027 0.89413 0.86550 0.87576 0.87965 0.91222 0.86909 0.75430 0.91061 0.92909 0.91938 0.92261 0.92000 0.91315 0.99224 0.92798 0.94170 0.97464 0.92838 0.90530 0.91409 0.90386 0.93712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.33 71.24 0.66 -0.73 16 2 C 0.51 10.27 7.96 87.66 0.70 10.97 16 3 O -0.61 -19.35 17.41 -3.03 -0.05 -19.40 16 4 N -0.62 -9.98 3.33 -811.78 -2.70 -12.68 16 5 C 0.10 0.71 6.69 86.86 0.58 1.29 16 6 C -0.11 -1.21 6.18 31.99 0.20 -1.01 16 7 C -0.11 -1.65 3.32 -10.35 -0.03 -1.68 16 8 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 9 C 0.52 11.56 6.98 87.66 0.61 12.18 16 10 O -0.57 -16.68 15.37 -3.03 -0.05 -16.73 16 11 N -0.72 -15.86 5.00 -442.52 -2.21 -18.07 16 12 C 0.16 4.00 2.40 44.99 0.11 4.11 16 13 H 0.07 2.08 7.58 -2.39 -0.02 2.07 16 14 C -0.15 -3.77 8.78 71.98 0.63 -3.14 16 15 C -0.08 -2.32 2.14 -10.76 -0.02 -2.34 16 16 C -0.12 -4.06 4.81 30.67 0.15 -3.91 16 17 C 0.18 8.29 5.31 86.36 0.46 8.75 16 18 N -0.61 -30.44 2.99 -699.12 -2.09 -32.54 16 19 C -0.26 -14.38 9.59 84.03 0.81 -13.57 16 20 H 0.07 3.50 7.89 -2.91 -0.02 3.47 16 21 C -0.05 -2.90 4.91 84.86 0.42 -2.48 16 22 N -0.94 -55.57 11.19 21.65 0.24 -55.33 16 23 Si 0.97 44.87 29.59 68.60 2.03 46.90 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 26 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 27 C 0.14 5.77 6.52 86.36 0.56 6.33 16 28 C -0.11 -3.67 4.97 30.67 0.15 -3.52 16 29 C 0.12 2.15 6.47 86.73 0.56 2.71 16 30 H 0.11 0.47 7.85 -2.39 -0.02 0.45 16 31 H 0.09 0.90 8.12 -2.39 -0.02 0.88 16 32 H 0.12 0.38 8.14 -2.38 -0.02 0.36 16 33 H 0.11 0.30 7.48 -2.38 -0.02 0.28 16 34 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.07 1.13 7.41 -2.39 -0.02 1.11 16 36 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.41 7.97 6.85 -92.71 -0.63 7.34 16 38 H 0.07 1.72 6.46 -2.39 -0.02 1.70 16 39 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.06 1.53 6.46 -2.38 -0.02 1.51 16 41 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.06 2.14 6.51 -2.39 -0.02 2.12 16 43 H 0.07 1.96 6.46 -2.39 -0.02 1.94 16 44 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 45 H 0.05 2.89 6.04 -2.39 -0.01 2.88 16 46 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 47 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 48 H 0.05 2.17 7.93 -2.38 -0.02 2.15 16 49 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 50 H 0.07 2.16 6.51 -2.39 -0.02 2.14 16 51 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 52 H 0.04 1.09 7.82 -2.39 -0.02 1.07 16 Total: -1.00 -78.74 399.63 1.98 -76.76 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.28 Total: 17.15 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: 6.54 Total: 13.94 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -6.76 Total: -118.62 kcal Atomic # 8 Polarization: -36.03 SS G_CDS: -0.10 Total: -36.13 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -78.74 1.98 -76.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997846522.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.032 kcal (2) G-P(sol) polarization free energy of solvation -78.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds