Wall clock time and date at job start Tue Mar 31 2020 21:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21282 * 120.00471 * 2 1 4 4 N 1.34778 * 119.99823 * 180.02562 * 2 1 3 5 5 C 1.47426 * 125.65023 * 0.03681 * 4 2 1 6 6 C 1.54905 * 104.83582 * 204.09329 * 5 4 2 7 7 C 1.55156 * 101.58178 * 322.99364 * 6 5 4 8 8 C 1.47024 * 125.64751 * 179.97438 * 4 2 1 9 9 H 1.08997 * 109.88473 * 298.39322 * 8 4 2 10 10 C 1.50705 * 109.88002 * 59.56200 * 8 4 2 11 11 O 1.21277 * 120.00291 * 18.54427 * 10 8 4 12 12 N 1.34779 * 119.99516 * 198.54462 * 10 8 4 13 13 C 1.46504 * 119.99573 * 179.97438 * 12 10 8 14 14 H 1.09000 * 109.47297 * 324.99708 * 13 12 10 15 15 C 1.53001 * 109.47054 * 85.00077 * 13 12 10 16 16 C 1.52995 * 109.46913 * 204.99937 * 13 12 10 17 17 C 1.53042 * 109.46343 * 300.06638 * 16 13 12 18 18 C 1.53186 * 109.31673 * 178.61325 * 17 16 13 19 19 N 1.46926 * 108.77541 * 54.63737 * 18 17 16 20 20 C 1.36933 * 120.63223 * 126.36998 * 19 18 17 21 21 H 1.08002 * 119.99772 * 331.86008 * 20 19 18 22 22 C 1.38808 * 120.00132 * 151.86793 * 20 19 18 23 23 N 1.31622 * 120.00149 * 343.05781 * 22 20 19 24 24 Si 1.86799 * 120.00167 * 163.06372 * 22 20 19 25 25 H 1.48504 * 109.47244 * 359.97438 * 24 22 20 26 26 H 1.48505 * 109.47538 * 119.99680 * 24 22 20 27 27 H 1.48502 * 109.47350 * 239.99694 * 24 22 20 28 28 C 1.46926 * 118.73690 * 306.39079 * 19 18 17 29 29 C 1.53038 * 109.46233 * 180.02562 * 16 13 12 30 30 H 1.09004 * 109.46839 * 239.99965 * 1 2 3 31 31 H 1.09006 * 109.46748 * 359.97438 * 1 2 3 32 32 H 1.08994 * 109.47284 * 119.99250 * 1 2 3 33 33 H 1.09002 * 110.36697 * 322.93782 * 5 4 2 34 34 H 1.09003 * 110.36431 * 85.14774 * 5 4 2 35 35 H 1.08999 * 111.00143 * 81.06174 * 6 5 4 36 36 H 1.08992 * 111.00735 * 204.87635 * 6 5 4 37 37 H 1.09002 * 110.72075 * 277.13614 * 7 6 5 38 38 H 1.09001 * 110.71982 * 153.86341 * 7 6 5 39 39 H 0.96997 * 120.00397 * 359.97438 * 12 10 8 40 40 H 1.08998 * 109.46715 * 179.97438 * 15 13 12 41 41 H 1.08993 * 109.47017 * 299.99923 * 15 13 12 42 42 H 1.08996 * 109.47093 * 60.00090 * 15 13 12 43 43 H 1.09009 * 109.46384 * 60.02751 * 16 13 12 44 44 H 1.09003 * 109.49903 * 298.57116 * 17 16 13 45 45 H 1.09007 * 109.49515 * 58.66243 * 17 16 13 46 46 H 1.09005 * 109.59242 * 294.85138 * 18 17 16 47 47 H 1.09000 * 109.71041 * 174.49348 * 18 17 16 48 48 H 0.96998 * 120.00198 * 180.02562 * 23 22 20 49 49 H 1.08996 * 109.58715 * 293.81939 * 28 19 18 50 50 H 1.09004 * 109.69942 * 173.46425 * 28 19 18 51 51 H 1.08997 * 109.49861 * 301.33623 * 29 16 13 52 52 H 1.09001 * 109.49735 * 61.39939 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.5730 -2.5103 -0.0019 6 6 2.6544 -3.4358 0.6093 7 6 3.9548 -2.8234 0.0251 8 6 3.6439 -1.3120 -0.0011 9 1 4.0605 -0.8632 -0.9029 10 6 4.2251 -0.6482 1.2207 11 8 3.5158 -0.4049 2.1739 12 7 5.5331 -0.3249 1.2541 13 6 6.0979 0.3208 2.4416 14 1 5.3572 0.9910 2.8777 15 6 6.4861 -0.7467 3.4666 16 6 7.3394 1.1220 2.0446 17 6 8.3787 0.1811 1.4307 18 6 9.6060 0.9918 1.0028 19 7 10.0933 1.7576 2.1582 20 6 11.4000 1.6638 2.5565 21 1 11.9582 0.7585 2.3686 22 6 12.0072 2.7321 3.2020 23 7 11.4671 3.9309 3.1414 24 14 13.5911 2.4687 4.1567 25 1 13.9887 1.0404 4.0715 26 1 14.6643 3.3170 3.5790 27 1 13.3792 2.8390 5.5791 28 6 9.1516 2.6255 2.8783 29 6 7.9297 1.7960 3.2853 30 1 -0.3633 -0.5139 0.8900 31 1 -0.3633 1.0277 0.0005 32 1 -0.3633 -0.5137 -0.8900 33 1 0.6733 -2.5202 0.6135 34 1 1.3384 -2.8195 -1.0205 35 1 2.6495 -3.3767 1.6977 36 1 2.5222 -4.4648 0.2754 37 1 4.1381 -3.1966 -0.9825 38 1 4.8048 -3.0313 0.6750 39 1 6.1005 -0.5199 0.4919 40 1 6.9068 -0.2662 4.3499 41 1 5.6017 -1.3174 3.7494 42 1 7.2269 -1.4168 3.0305 43 1 7.0626 1.8828 1.3146 44 1 8.6745 -0.5651 2.1682 45 1 7.9500 -0.3165 0.5607 46 1 9.3304 1.6764 0.2007 47 1 10.3888 0.3177 0.6549 48 1 11.8916 4.6775 3.5922 49 1 8.8388 3.4433 2.2292 50 1 9.6321 3.0296 3.7694 51 1 7.1814 2.4481 3.7358 52 1 8.2293 1.0344 4.0052 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997876099.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:02 Heat of formation + Delta-G solvation = -54.343414 kcal Electronic energy + Delta-G solvation = -30771.138766 eV Core-core repulsion = 26770.850140 eV Total energy + Delta-G solvation = -4000.288625 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.90945 -39.28670 -38.02388 -37.20338 -35.20048 -32.95886 -32.30141 -31.28459 -30.33094 -29.74522 -29.14454 -28.53510 -25.43469 -24.37720 -23.30549 -22.47539 -22.03395 -20.96928 -20.21340 -19.39067 -18.60263 -17.70664 -17.29159 -16.61858 -16.20187 -15.64149 -15.42561 -14.95855 -14.73930 -14.47742 -14.21902 -13.97773 -13.81282 -13.68926 -13.51938 -13.22865 -13.10387 -13.00049 -12.76449 -12.61641 -12.45165 -12.36279 -12.10949 -11.73810 -11.68195 -11.62078 -11.43630 -11.36479 -11.20378 -10.88086 -10.70438 -10.40033 -10.12003 -10.06881 -10.06008 -9.99075 -9.82873 -9.48387 -9.37301 -8.92768 -8.83783 -8.44313 -6.63532 -5.76124 -3.18666 2.38059 2.58146 2.77013 3.31475 3.38222 3.46094 3.48069 4.02318 4.09428 4.45879 4.51431 4.55779 4.67194 4.81284 4.95085 5.01050 5.07651 5.10402 5.15883 5.21681 5.28075 5.36969 5.38754 5.42451 5.45808 5.53736 5.56697 5.70024 5.70656 5.78062 5.88584 5.90614 6.10852 6.15285 6.21055 6.29986 6.42344 6.47437 6.63526 6.67600 6.78239 6.82785 6.86565 7.02569 7.21805 7.42116 7.60659 7.70749 7.82066 7.98412 8.32032 8.48042 9.24262 9.88035 10.45162 11.32280 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025566 B = 0.002383 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.935603 B =11748.490832 C =12156.556910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.530 3.470 3 O -0.532 6.532 4 N -0.604 5.604 5 C 0.102 3.898 6 C -0.133 4.133 7 C -0.121 4.121 8 C 0.116 3.884 9 H 0.096 0.904 10 C 0.511 3.489 11 O -0.531 6.531 12 N -0.719 5.719 13 C 0.148 3.852 14 H 0.081 0.919 15 C -0.160 4.160 16 C -0.085 4.085 17 C -0.127 4.127 18 C 0.145 3.855 19 N -0.592 5.592 20 C -0.250 4.250 21 H 0.065 0.935 22 C 0.001 3.999 23 N -0.902 5.902 24 Si 0.901 3.099 25 H -0.278 1.278 26 H -0.291 1.291 27 H -0.289 1.289 28 C 0.172 3.828 29 C -0.133 4.133 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.398 0.602 40 H 0.070 0.930 41 H 0.049 0.951 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.043 0.957 46 H 0.015 0.985 47 H 0.052 0.948 48 H 0.253 0.747 49 H 0.017 0.983 50 H 0.087 0.913 51 H 0.049 0.951 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.332 -16.904 -7.970 28.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.319 3.681 3 O -0.408 6.408 4 N -0.340 5.340 5 C -0.020 4.020 6 C -0.171 4.171 7 C -0.159 4.159 8 C 0.009 3.991 9 H 0.114 0.886 10 C 0.295 3.705 11 O -0.407 6.407 12 N -0.372 5.372 13 C 0.044 3.956 14 H 0.099 0.901 15 C -0.218 4.218 16 C -0.104 4.104 17 C -0.167 4.167 18 C 0.019 3.981 19 N -0.314 5.314 20 C -0.380 4.380 21 H 0.083 0.917 22 C -0.198 4.198 23 N -0.547 5.547 24 Si 0.731 3.269 25 H -0.203 1.203 26 H -0.218 1.218 27 H -0.216 1.216 28 C 0.046 3.954 29 C -0.173 4.173 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.233 0.767 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.083 0.917 45 H 0.062 0.938 46 H 0.033 0.967 47 H 0.071 0.929 48 H 0.063 0.937 49 H 0.035 0.965 50 H 0.105 0.895 51 H 0.068 0.932 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.510 -15.896 -7.207 27.700 hybrid contribution 1.082 -0.116 0.120 1.095 sum -20.427 -16.012 -7.086 26.905 Atomic orbital electron populations 1.21870 0.91176 1.05494 1.03979 1.20487 0.90377 0.81933 0.75274 1.90767 1.70607 1.30565 1.48833 1.48287 1.05086 1.06317 1.74343 1.22350 0.97138 0.81596 1.00956 1.22802 0.93627 0.99004 1.01664 1.22629 0.99217 0.91028 1.03071 1.21526 0.82810 0.97367 0.97441 0.88606 1.20640 0.82302 0.78670 0.88911 1.90666 1.59554 1.53345 1.37124 1.46171 1.09293 1.61862 1.19824 1.21088 0.95504 0.94076 0.84975 0.90068 1.22208 1.00967 0.99182 0.99447 1.21314 0.92840 0.97118 0.99133 1.22108 0.97188 0.98336 0.99033 1.20878 0.93534 0.93610 0.90087 1.44044 1.06735 1.51172 1.29495 1.19210 0.87773 0.97211 1.33819 0.91746 1.25050 0.97913 0.94697 1.02093 1.70044 1.40793 0.98660 1.45199 0.86250 0.83257 0.77558 0.79857 1.20302 1.21775 1.21584 1.20761 0.87021 0.90162 0.97474 1.22252 0.99290 0.99859 0.95899 0.89390 0.88902 0.89563 0.90253 0.90903 0.90085 0.89270 0.89210 0.89308 0.76707 0.91124 0.93210 0.92168 0.91437 0.91732 0.93841 0.96684 0.92935 0.93705 0.96536 0.89464 0.93235 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 9.33 36.01 0.34 -0.91 16 2 C 0.53 6.61 7.30 -10.99 -0.08 6.53 16 3 O -0.53 -9.37 16.71 5.56 0.09 -9.28 16 4 N -0.60 -6.16 2.79 -164.32 -0.46 -6.62 16 5 C 0.10 0.60 6.69 -2.53 -0.02 0.58 16 6 C -0.13 -0.74 7.09 -24.59 -0.17 -0.91 16 7 C -0.12 -0.78 6.48 -24.89 -0.16 -0.94 16 8 C 0.12 1.19 3.29 -68.10 -0.22 0.97 16 9 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 10 C 0.51 7.20 6.15 -10.98 -0.07 7.13 16 11 O -0.53 -9.56 15.63 5.56 0.09 -9.47 16 12 N -0.72 -9.50 5.00 -53.80 -0.27 -9.77 16 13 C 0.15 2.24 2.40 -67.93 -0.16 2.08 16 14 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 15 C -0.16 -2.27 8.78 37.16 0.33 -1.94 16 16 C -0.08 -1.42 2.14 -90.58 -0.19 -1.62 16 17 C -0.13 -2.08 4.81 -26.61 -0.13 -2.20 16 18 C 0.15 2.99 6.52 -3.71 -0.02 2.96 16 19 N -0.59 -14.76 2.99 -172.32 -0.52 -15.28 16 20 C -0.25 -6.87 9.58 -15.06 -0.14 -7.01 16 21 H 0.06 1.74 7.89 -52.49 -0.41 1.32 16 22 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 23 N -0.90 -26.47 11.19 55.49 0.62 -25.85 16 24 Si 0.90 21.79 29.59 -169.99 -5.03 16.76 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 C 0.17 4.13 5.30 -3.71 -0.02 4.11 16 29 C -0.13 -2.56 4.96 -26.61 -0.13 -2.70 16 30 H 0.09 0.54 7.85 -51.93 -0.41 0.13 16 31 H 0.09 0.73 8.12 -51.93 -0.42 0.30 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.38 7.48 -51.93 -0.39 -0.01 16 34 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.60 7.82 -51.93 -0.41 0.19 16 39 H 0.40 4.38 6.84 -40.82 -0.28 4.10 16 40 H 0.07 1.03 6.46 -51.93 -0.34 0.70 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.81 6.46 -51.93 -0.34 0.47 16 43 H 0.07 1.21 8.14 -51.92 -0.42 0.79 16 44 H 0.06 1.08 6.51 -51.93 -0.34 0.75 16 45 H 0.04 0.57 6.46 -51.93 -0.34 0.24 16 46 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 48 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.09 2.36 6.06 -51.93 -0.31 2.04 16 51 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 52 H 0.06 1.17 6.51 -51.93 -0.34 0.83 16 LS Contribution 398.82 15.07 6.01 6.01 Total: -1.00 -36.21 398.82 -9.32 -45.53 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -8.90 Total: 1.89 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -0.95 Total: 6.08 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: -0.62 Total: -57.52 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.18 Total: -18.75 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.21 -9.32 -45.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997876099.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.810 kcal (2) G-P(sol) polarization free energy of solvation -36.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds