Wall clock time and date at job start Tue Mar 31 2020 21:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21282 * 120.00471 * 2 1 4 4 N 1.34778 * 119.99823 * 180.02562 * 2 1 3 5 5 C 1.47426 * 125.65023 * 0.03681 * 4 2 1 6 6 C 1.54905 * 104.83582 * 204.09329 * 5 4 2 7 7 C 1.55156 * 101.58178 * 322.99364 * 6 5 4 8 8 C 1.47024 * 125.64751 * 179.97438 * 4 2 1 9 9 H 1.08997 * 109.88473 * 298.39322 * 8 4 2 10 10 C 1.50705 * 109.88002 * 59.56200 * 8 4 2 11 11 O 1.21277 * 120.00291 * 18.54427 * 10 8 4 12 12 N 1.34779 * 119.99516 * 198.54462 * 10 8 4 13 13 C 1.46504 * 119.99573 * 179.97438 * 12 10 8 14 14 H 1.09000 * 109.47297 * 324.99708 * 13 12 10 15 15 C 1.53001 * 109.47054 * 85.00077 * 13 12 10 16 16 C 1.52995 * 109.46913 * 204.99937 * 13 12 10 17 17 C 1.53042 * 109.46343 * 300.06638 * 16 13 12 18 18 C 1.53186 * 109.31673 * 178.61325 * 17 16 13 19 19 N 1.46926 * 108.77541 * 54.63737 * 18 17 16 20 20 C 1.36933 * 120.63223 * 126.36998 * 19 18 17 21 21 H 1.08002 * 119.99772 * 331.86008 * 20 19 18 22 22 C 1.38808 * 120.00132 * 151.86793 * 20 19 18 23 23 N 1.31622 * 120.00149 * 343.05781 * 22 20 19 24 24 Si 1.86799 * 120.00167 * 163.06372 * 22 20 19 25 25 H 1.48504 * 109.47244 * 359.97438 * 24 22 20 26 26 H 1.48505 * 109.47538 * 119.99680 * 24 22 20 27 27 H 1.48502 * 109.47350 * 239.99694 * 24 22 20 28 28 C 1.46926 * 118.73690 * 306.39079 * 19 18 17 29 29 C 1.53038 * 109.46233 * 180.02562 * 16 13 12 30 30 H 1.09004 * 109.46839 * 239.99965 * 1 2 3 31 31 H 1.09006 * 109.46748 * 359.97438 * 1 2 3 32 32 H 1.08994 * 109.47284 * 119.99250 * 1 2 3 33 33 H 1.09002 * 110.36697 * 322.93782 * 5 4 2 34 34 H 1.09003 * 110.36431 * 85.14774 * 5 4 2 35 35 H 1.08999 * 111.00143 * 81.06174 * 6 5 4 36 36 H 1.08992 * 111.00735 * 204.87635 * 6 5 4 37 37 H 1.09002 * 110.72075 * 277.13614 * 7 6 5 38 38 H 1.09001 * 110.71982 * 153.86341 * 7 6 5 39 39 H 0.96997 * 120.00397 * 359.97438 * 12 10 8 40 40 H 1.08998 * 109.46715 * 179.97438 * 15 13 12 41 41 H 1.08993 * 109.47017 * 299.99923 * 15 13 12 42 42 H 1.08996 * 109.47093 * 60.00090 * 15 13 12 43 43 H 1.09009 * 109.46384 * 60.02751 * 16 13 12 44 44 H 1.09003 * 109.49903 * 298.57116 * 17 16 13 45 45 H 1.09007 * 109.49515 * 58.66243 * 17 16 13 46 46 H 1.09005 * 109.59242 * 294.85138 * 18 17 16 47 47 H 1.09000 * 109.71041 * 174.49348 * 18 17 16 48 48 H 0.96998 * 120.00198 * 180.02562 * 23 22 20 49 49 H 1.08996 * 109.58715 * 293.81939 * 28 19 18 50 50 H 1.09004 * 109.69942 * 173.46425 * 28 19 18 51 51 H 1.08997 * 109.49861 * 301.33623 * 29 16 13 52 52 H 1.09001 * 109.49735 * 61.39939 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.5730 -2.5103 -0.0019 6 6 2.6544 -3.4358 0.6093 7 6 3.9548 -2.8234 0.0251 8 6 3.6439 -1.3120 -0.0011 9 1 4.0605 -0.8632 -0.9029 10 6 4.2251 -0.6482 1.2207 11 8 3.5158 -0.4049 2.1739 12 7 5.5331 -0.3249 1.2541 13 6 6.0979 0.3208 2.4416 14 1 5.3572 0.9910 2.8777 15 6 6.4861 -0.7467 3.4666 16 6 7.3394 1.1220 2.0446 17 6 8.3787 0.1811 1.4307 18 6 9.6060 0.9918 1.0028 19 7 10.0933 1.7576 2.1582 20 6 11.4000 1.6638 2.5565 21 1 11.9582 0.7585 2.3686 22 6 12.0072 2.7321 3.2020 23 7 11.4671 3.9309 3.1414 24 14 13.5911 2.4687 4.1567 25 1 13.9887 1.0404 4.0715 26 1 14.6643 3.3170 3.5790 27 1 13.3792 2.8390 5.5791 28 6 9.1516 2.6255 2.8783 29 6 7.9297 1.7960 3.2853 30 1 -0.3633 -0.5139 0.8900 31 1 -0.3633 1.0277 0.0005 32 1 -0.3633 -0.5137 -0.8900 33 1 0.6733 -2.5202 0.6135 34 1 1.3384 -2.8195 -1.0205 35 1 2.6495 -3.3767 1.6977 36 1 2.5222 -4.4648 0.2754 37 1 4.1381 -3.1966 -0.9825 38 1 4.8048 -3.0313 0.6750 39 1 6.1005 -0.5199 0.4919 40 1 6.9068 -0.2662 4.3499 41 1 5.6017 -1.3174 3.7494 42 1 7.2269 -1.4168 3.0305 43 1 7.0626 1.8828 1.3146 44 1 8.6745 -0.5651 2.1682 45 1 7.9500 -0.3165 0.5607 46 1 9.3304 1.6764 0.2007 47 1 10.3888 0.3177 0.6549 48 1 11.8916 4.6775 3.5922 49 1 8.8388 3.4433 2.2292 50 1 9.6321 3.0296 3.7694 51 1 7.1814 2.4481 3.7358 52 1 8.2293 1.0344 4.0052 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997876099.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:01 Heat of formation + Delta-G solvation = -79.303767 kcal Electronic energy + Delta-G solvation = -30772.221128 eV Core-core repulsion = 26770.850140 eV Total energy + Delta-G solvation = -4001.370987 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.81489 -40.46027 -39.35617 -38.12951 -36.75725 -34.52188 -33.26415 -32.72587 -31.53905 -31.03589 -30.30666 -29.43587 -27.16742 -25.39502 -24.59040 -23.95492 -23.01944 -22.17211 -21.43474 -20.38940 -20.03427 -18.75827 -18.45319 -18.09638 -17.20754 -16.91461 -16.44800 -16.32522 -15.92905 -15.71418 -15.54856 -15.36318 -15.17892 -14.83631 -14.62866 -14.44619 -14.13709 -14.10114 -13.87486 -13.72681 -13.54299 -13.31702 -13.07219 -13.04676 -12.98479 -12.92546 -12.65259 -12.47158 -12.30512 -12.15795 -12.13662 -11.99984 -11.92271 -11.69809 -11.62339 -11.21782 -11.01879 -10.99614 -10.87402 -10.54268 -10.09887 -9.70982 -8.67747 -7.86865 -5.32551 1.45594 1.47549 1.47880 1.58068 1.64852 1.95341 2.30305 2.51372 3.27735 3.44719 3.58406 3.66961 3.69991 3.83854 3.84748 3.89253 4.02298 4.06649 4.27544 4.35111 4.39125 4.43684 4.52489 4.56915 4.58541 4.58681 4.71309 4.72831 4.77279 4.85906 4.88984 4.91716 4.95275 4.97878 5.01457 5.07992 5.13958 5.20252 5.23881 5.24898 5.29507 5.33288 5.40596 5.52500 5.56294 5.66410 5.77222 6.39690 6.44412 6.57600 7.12396 7.14981 7.26588 7.87103 8.39402 9.19813 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025566 B = 0.002383 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.935603 B =11748.490832 C =12156.556910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.513 3.487 3 O -0.600 6.600 4 N -0.606 5.606 5 C 0.095 3.905 6 C -0.129 4.129 7 C -0.113 4.113 8 C 0.110 3.890 9 H 0.101 0.899 10 C 0.505 3.495 11 O -0.576 6.576 12 N -0.712 5.712 13 C 0.159 3.841 14 H 0.053 0.947 15 C -0.151 4.151 16 C -0.075 4.075 17 C -0.112 4.112 18 C 0.139 3.861 19 N -0.609 5.609 20 C -0.257 4.257 21 H 0.070 0.930 22 C -0.056 4.056 23 N -0.939 5.939 24 Si 0.967 3.033 25 H -0.263 1.263 26 H -0.294 1.294 27 H -0.292 1.292 28 C 0.179 3.821 29 C -0.121 4.121 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.120 0.880 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.057 0.943 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.086 0.914 39 H 0.411 0.589 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.074 0.926 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.084 0.916 46 H 0.008 0.992 47 H 0.059 0.941 48 H 0.248 0.752 49 H -0.012 1.012 50 H 0.052 0.948 51 H 0.054 0.946 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.380 -20.878 -9.365 32.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.305 3.695 3 O -0.481 6.481 4 N -0.340 5.340 5 C -0.025 4.025 6 C -0.167 4.167 7 C -0.151 4.151 8 C 0.002 3.998 9 H 0.119 0.881 10 C 0.291 3.709 11 O -0.455 6.455 12 N -0.365 5.365 13 C 0.054 3.946 14 H 0.071 0.929 15 C -0.209 4.209 16 C -0.094 4.094 17 C -0.151 4.151 18 C 0.014 3.986 19 N -0.333 5.333 20 C -0.387 4.387 21 H 0.088 0.912 22 C -0.250 4.250 23 N -0.585 5.585 24 Si 0.795 3.205 25 H -0.187 1.187 26 H -0.221 1.221 27 H -0.219 1.219 28 C 0.053 3.947 29 C -0.161 4.161 30 H 0.122 0.878 31 H 0.102 0.898 32 H 0.139 0.861 33 H 0.109 0.891 34 H 0.123 0.877 35 H 0.076 0.924 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.105 0.895 39 H 0.248 0.752 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.093 0.907 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.103 0.897 46 H 0.026 0.974 47 H 0.078 0.922 48 H 0.057 0.943 49 H 0.006 0.994 50 H 0.071 0.929 51 H 0.073 0.927 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -22.569 -19.964 -8.642 31.347 hybrid contribution 1.382 1.117 0.500 1.846 sum -21.187 -18.847 -8.143 29.503 Atomic orbital electron populations 1.21884 0.87643 1.05790 1.06305 1.21425 0.92299 0.81636 0.74146 1.90725 1.72185 1.33020 1.52194 1.48516 1.05328 1.07481 1.72652 1.22722 0.97434 0.79186 1.03194 1.22834 0.92935 1.00700 1.00259 1.22718 0.99541 0.87793 1.05040 1.21743 0.83072 0.99770 0.95185 0.88128 1.21444 0.81948 0.77887 0.89630 1.90640 1.60511 1.55225 1.39146 1.46051 1.09579 1.61305 1.19544 1.20741 0.93772 0.94004 0.86039 0.92885 1.22114 1.01175 0.98755 0.98822 1.21151 0.93670 0.97076 0.97497 1.21957 0.94986 0.97482 1.00671 1.21084 0.95444 0.93500 0.88588 1.44318 1.06348 1.51543 1.31083 1.19575 0.88792 0.97169 1.33186 0.91197 1.25840 1.01281 0.94477 1.03449 1.70208 1.42456 0.99417 1.46446 0.85214 0.79376 0.77971 0.77938 1.18725 1.22086 1.21908 1.20522 0.88435 0.90302 0.95409 1.22048 0.97334 0.99482 0.97218 0.87796 0.89768 0.86121 0.89090 0.87696 0.92423 0.85902 0.85983 0.89496 0.75183 0.91732 0.93354 0.90693 0.92719 0.91255 0.89720 0.97378 0.92239 0.94255 0.99375 0.92911 0.92690 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.33 71.24 0.66 -1.44 16 2 C 0.51 12.61 7.30 87.66 0.64 13.25 16 3 O -0.60 -21.97 16.71 -3.04 -0.05 -22.02 16 4 N -0.61 -11.28 2.79 -792.16 -2.21 -13.49 16 5 C 0.10 0.77 6.69 86.85 0.58 1.35 16 6 C -0.13 -0.96 7.09 31.98 0.23 -0.74 16 7 C -0.11 -1.04 6.48 31.78 0.21 -0.83 16 8 C 0.11 2.06 3.29 44.60 0.15 2.21 16 9 H 0.10 1.77 8.14 -2.39 -0.02 1.76 16 10 C 0.50 13.96 6.15 87.66 0.54 14.50 16 11 O -0.58 -21.11 15.63 -3.02 -0.05 -21.16 16 12 N -0.71 -17.96 5.00 -442.53 -2.21 -20.18 16 13 C 0.16 4.77 2.40 44.99 0.11 4.88 16 14 H 0.05 1.92 7.58 -2.39 -0.02 1.90 16 15 C -0.15 -4.08 8.78 71.98 0.63 -3.44 16 16 C -0.07 -2.47 2.14 -10.77 -0.02 -2.49 16 17 C -0.11 -3.42 4.81 30.67 0.15 -3.27 16 18 C 0.14 5.59 6.52 86.36 0.56 6.15 16 19 N -0.61 -30.77 2.99 -699.10 -2.09 -32.87 16 20 C -0.26 -14.17 9.58 84.03 0.81 -13.36 16 21 H 0.07 3.71 7.89 -2.91 -0.02 3.69 16 22 C -0.06 -3.15 4.92 84.86 0.42 -2.73 16 23 N -0.94 -57.05 11.19 21.65 0.24 -56.80 16 24 Si 0.97 45.39 29.59 68.60 2.03 47.42 16 25 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 26 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 27 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 28 C 0.18 8.98 5.30 86.36 0.46 9.44 16 29 C -0.12 -4.75 4.96 30.67 0.15 -4.60 16 30 H 0.10 1.06 7.85 -2.38 -0.02 1.04 16 31 H 0.08 1.28 8.12 -2.38 -0.02 1.26 16 32 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.09 0.54 7.48 -2.39 -0.02 0.53 16 34 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.12 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.12 0.39 8.14 -2.39 -0.02 0.38 16 38 H 0.09 0.87 7.82 -2.39 -0.02 0.86 16 39 H 0.41 8.05 6.84 -92.71 -0.63 7.42 16 40 H 0.06 1.83 6.46 -2.39 -0.02 1.81 16 41 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.07 1.81 6.46 -2.39 -0.02 1.79 16 43 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 44 H 0.07 2.11 6.51 -2.39 -0.02 2.10 16 45 H 0.08 1.92 6.46 -2.38 -0.02 1.90 16 46 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 47 H 0.06 2.29 7.93 -2.39 -0.02 2.27 16 48 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 49 H -0.01 -0.65 8.14 -2.39 -0.02 -0.66 16 50 H 0.05 2.99 6.06 -2.39 -0.01 2.98 16 51 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 52 H 0.06 2.50 6.51 -2.39 -0.02 2.49 16 Total: -1.00 -84.74 398.82 2.20 -82.54 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.28 Total: 17.70 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: 6.26 Total: 18.85 kcal Atomic # 7 Polarization: -117.07 SS G_CDS: -6.27 Total: -123.34 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -0.10 Total: -43.18 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -84.74 2.20 -82.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997876099.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.234 kcal (2) G-P(sol) polarization free energy of solvation -84.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds