Wall clock time and date at job start Tue Mar 31 2020 20:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.50606 * 2 1 4 4 C 1.53099 * 109.50421 * 239.91671 * 2 1 3 5 5 N 1.47007 * 109.26175 * 183.21256 * 4 2 1 6 6 C 1.46903 * 111.00618 * 182.39148 * 5 4 2 7 7 C 1.47020 * 110.74662 * 58.61717 * 5 4 2 8 8 C 1.53097 * 109.25967 * 301.38329 * 7 5 4 9 9 H 1.08998 * 109.50646 * 296.87142 * 8 7 5 10 10 C 1.50697 * 109.50482 * 176.78454 * 8 7 5 11 11 O 1.21284 * 119.99864 * 244.99772 * 10 8 7 12 12 N 1.34772 * 120.00144 * 65.00426 * 10 8 7 13 13 C 1.46503 * 120.00189 * 180.02562 * 12 10 8 14 14 C 1.53144 * 109.43818 * 119.87133 * 13 12 10 15 15 C 1.53691 * 108.88297 * 66.17206 * 14 13 12 16 16 H 1.09004 * 112.10306 * 187.61834 * 15 14 13 17 17 C 1.54611 * 107.83383 * 312.23263 * 15 14 13 18 18 C 1.54816 * 104.65269 * 88.54809 * 17 15 14 19 19 C 1.54608 * 104.65473 * 0.02562 * 18 17 15 20 20 H 1.09001 * 112.69222 * 147.19038 * 19 18 17 21 21 C 1.53153 * 109.43351 * 240.09333 * 13 12 10 22 22 N 1.48289 * 104.25739 * 25.25285 * 19 18 17 23 23 C 1.36940 * 128.20765 * 138.40884 * 22 19 18 24 24 H 1.07994 * 120.00061 * 344.47656 * 23 22 19 25 25 C 1.38811 * 119.99850 * 164.48677 * 23 22 19 26 26 N 1.31619 * 120.00385 * 351.54161 * 25 23 22 27 27 Si 1.86805 * 120.00061 * 171.54144 * 25 23 22 28 28 H 1.48500 * 109.47159 * 270.00130 * 27 25 23 29 29 H 1.48506 * 109.46773 * 29.99992 * 27 25 23 30 30 H 1.48498 * 109.47058 * 150.00039 * 27 25 23 31 31 O 1.43014 * 109.25828 * 56.85197 * 8 7 5 32 32 H 1.08998 * 109.47298 * 180.08500 * 1 2 3 33 33 H 1.09004 * 109.46906 * 300.08459 * 1 2 3 34 34 H 1.08997 * 109.47566 * 60.07875 * 1 2 3 35 35 H 1.09007 * 109.50557 * 63.27661 * 4 2 1 36 36 H 1.09001 * 109.54260 * 303.17434 * 4 2 1 37 37 H 1.08997 * 109.47040 * 300.32578 * 6 5 4 38 38 H 1.09001 * 109.46347 * 60.32044 * 6 5 4 39 39 H 1.08994 * 109.47388 * 180.32338 * 6 5 4 40 40 H 1.09007 * 109.50378 * 181.45109 * 7 5 4 41 41 H 1.09003 * 109.50906 * 61.32415 * 7 5 4 42 42 H 0.97004 * 120.00320 * 359.97438 * 12 10 8 43 43 H 1.08998 * 109.43380 * 359.95574 * 13 12 10 44 44 H 1.09004 * 109.56250 * 306.35140 * 14 13 12 45 45 H 1.09006 * 109.66893 * 186.05768 * 14 13 12 46 46 H 1.09001 * 110.38126 * 207.48264 * 17 15 14 47 47 H 1.09005 * 110.38137 * 329.84259 * 17 15 14 48 48 H 1.09001 * 110.33527 * 241.26805 * 18 17 15 49 49 H 1.09004 * 110.62535 * 118.88743 * 18 17 15 50 50 H 1.08997 * 109.56988 * 53.63725 * 21 13 12 51 51 H 1.09001 * 109.56671 * 173.88594 * 21 13 12 52 52 H 0.96999 * 120.00430 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7234 -1.2487 5 7 3.5092 -0.7879 -1.2050 6 6 4.0445 -1.4259 -2.4152 7 6 3.9639 -1.4885 0.0050 8 6 3.4335 -0.7574 1.2411 9 1 3.8541 0.2475 1.2781 10 6 3.8298 -1.5148 2.4822 11 8 2.9778 -2.0182 3.1834 12 7 5.1310 -1.6326 2.8131 13 6 5.5163 -2.3693 4.0193 14 6 6.4175 -3.5455 3.6320 15 6 7.7397 -2.9961 3.0734 16 1 8.3682 -3.7839 2.6579 17 6 7.3973 -1.8988 2.0394 18 6 7.3034 -0.5949 2.8688 19 6 7.5990 -1.0333 4.3216 20 1 8.1155 -0.2642 4.8961 21 6 6.2693 -1.4333 4.9693 22 7 8.4131 -2.2638 4.1733 23 6 9.5202 -2.6380 4.8871 24 1 10.0471 -1.9109 5.4871 25 6 9.9653 -3.9520 4.8393 26 7 9.2353 -4.8730 4.2467 27 14 11.6005 -4.4131 5.6159 28 1 12.6838 -4.2709 4.6101 29 1 11.8727 -3.5149 6.7668 30 1 11.5450 -5.8199 6.0881 31 8 2.0076 -0.6768 1.1659 32 1 -0.3634 -1.0276 0.0015 33 1 -0.3633 0.5152 0.8893 34 1 -0.3634 0.5126 -0.8906 35 1 1.7271 -0.1786 -2.1391 36 1 1.6331 -1.7337 -1.2775 37 1 3.6479 -2.4377 -2.4983 38 1 3.7507 -0.8473 -3.2910 39 1 5.1320 -1.4658 -2.3541 40 1 5.0536 -1.5021 0.0298 41 1 3.5866 -2.5111 -0.0030 42 1 5.8125 -1.2302 2.2522 43 1 4.6219 -2.7458 4.5156 44 1 5.9226 -4.1495 2.8715 45 1 6.6189 -4.1582 4.5108 46 1 8.1876 -1.8208 1.2928 47 1 6.4416 -2.1129 1.5609 48 1 6.3018 -0.1711 2.7962 49 1 8.0461 0.1285 2.5323 50 1 5.6698 -0.5423 5.1552 51 1 6.4620 -1.9470 5.9112 52 1 9.5465 -5.7911 4.2130 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021297021.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:47 Heat of formation + Delta-G solvation = 31.520989 kcal Electronic energy + Delta-G solvation = -32117.156205 eV Core-core repulsion = 28120.590940 eV Total energy + Delta-G solvation = -3996.565265 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.23115 -39.94279 -38.00807 -35.93094 -34.19431 -33.18214 -32.15717 -31.33288 -30.35189 -29.59932 -28.75440 -27.33052 -25.45824 -24.34914 -23.33591 -22.71341 -21.69293 -20.76236 -20.28952 -19.63822 -19.27035 -17.53586 -16.98913 -16.46025 -16.25747 -15.85247 -15.37206 -15.03917 -14.89197 -14.34781 -14.20708 -13.86195 -13.79986 -13.29756 -13.04596 -12.95499 -12.92284 -12.74877 -12.63901 -12.45792 -12.20517 -12.12550 -12.07204 -11.79454 -11.65443 -11.56362 -11.38187 -10.99776 -10.94339 -10.87584 -10.67400 -10.39210 -10.29743 -10.06295 -9.81218 -9.75684 -9.52992 -9.38606 -9.29996 -8.74214 -8.66022 -8.20662 -6.86668 -5.81211 -3.16913 2.82308 3.00720 3.35895 3.42114 3.43445 3.50806 4.03372 4.42487 4.49227 4.61313 4.71389 4.85443 4.92512 5.07927 5.09592 5.13527 5.17913 5.23026 5.29679 5.30953 5.38339 5.38954 5.52644 5.55857 5.58686 5.59754 5.63038 5.75991 5.77380 5.83341 5.90922 5.97413 6.00688 6.15686 6.27938 6.48945 6.52130 6.54779 6.55507 6.60167 6.62881 6.76345 6.87112 6.94130 6.99837 7.13427 7.48729 7.51304 7.70388 7.88497 8.18363 8.55662 9.08678 9.70737 10.48654 11.30900 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022694 B = 0.003058 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.497058 B = 9152.946156 C = 9654.549841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.086 3.914 3 H 0.068 0.932 4 C 0.020 3.980 5 N -0.540 5.540 6 C 0.023 3.977 7 C 0.026 3.974 8 C 0.079 3.921 9 H 0.088 0.912 10 C 0.503 3.497 11 O -0.532 6.532 12 N -0.732 5.732 13 C 0.143 3.857 14 C -0.124 4.124 15 C 0.181 3.819 16 H 0.114 0.886 17 C -0.173 4.173 18 C -0.161 4.161 19 C 0.150 3.850 20 H 0.068 0.932 21 C -0.138 4.138 22 N -0.583 5.583 23 C -0.224 4.224 24 H 0.076 0.924 25 C -0.004 4.004 26 N -0.912 5.912 27 Si 0.910 3.090 28 H -0.289 1.289 29 H -0.281 1.281 30 H -0.291 1.291 31 O -0.352 6.352 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.045 0.955 37 H 0.029 0.971 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.052 0.948 42 H 0.427 0.573 43 H 0.083 0.917 44 H 0.043 0.957 45 H 0.085 0.915 46 H 0.060 0.940 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.062 0.938 50 H 0.049 0.951 51 H 0.074 0.926 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.996 9.794 -12.670 20.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 H 0.086 0.914 4 C -0.108 4.108 5 N -0.265 5.265 6 C -0.125 4.125 7 C -0.102 4.102 8 C 0.017 3.983 9 H 0.106 0.894 10 C 0.287 3.713 11 O -0.409 6.409 12 N -0.407 5.407 13 C 0.040 3.960 14 C -0.164 4.164 15 C 0.074 3.926 16 H 0.131 0.869 17 C -0.212 4.212 18 C -0.201 4.201 19 C 0.041 3.959 20 H 0.087 0.913 21 C -0.179 4.179 22 N -0.304 5.304 23 C -0.352 4.352 24 H 0.093 0.907 25 C -0.201 4.201 26 N -0.558 5.558 27 Si 0.741 3.259 28 H -0.217 1.217 29 H -0.207 1.207 30 H -0.218 1.218 31 O -0.270 6.270 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.070 0.930 42 H 0.287 0.713 43 H 0.101 0.899 44 H 0.061 0.939 45 H 0.104 0.896 46 H 0.079 0.921 47 H 0.092 0.908 48 H 0.095 0.905 49 H 0.080 0.920 50 H 0.067 0.933 51 H 0.092 0.908 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.302 9.642 -11.964 19.684 hybrid contribution 0.921 -0.895 -0.111 1.289 sum -11.381 8.747 -12.074 18.757 Atomic orbital electron populations 1.21727 0.92434 1.03201 1.02697 1.22226 0.95153 0.95657 0.84180 0.91360 1.22894 0.87786 1.00582 0.99530 1.62221 1.09101 1.52704 1.02424 1.22407 1.00974 0.97147 0.91928 1.22730 1.01505 0.96583 0.89425 1.21948 0.83494 0.99670 0.93188 0.89398 1.20213 0.84269 0.80889 0.85957 1.90672 1.50605 1.47202 1.52384 1.49032 1.07055 1.55689 1.28875 1.21111 0.97835 0.92504 0.84595 1.22382 0.96421 0.95547 1.02070 1.21519 0.91723 0.92855 0.86522 0.86856 1.23525 1.00359 0.97590 0.99768 1.23356 1.00490 0.97547 0.98700 1.21427 0.90692 0.91032 0.92703 0.91337 1.22431 0.97721 0.98507 0.99201 1.45181 1.29090 1.18654 1.37430 1.18993 1.00470 0.93074 1.22680 0.90653 1.24842 0.99038 0.95343 1.00890 1.69836 1.36792 1.01153 1.48027 0.86148 0.83461 0.77518 0.78768 1.21669 1.20688 1.21763 1.88137 1.18466 1.78165 1.42228 0.91710 0.91288 0.90886 0.89472 0.93635 0.95258 0.90997 0.90716 0.88824 0.92976 0.71309 0.89884 0.93865 0.89603 0.92089 0.90773 0.90481 0.91974 0.93270 0.90766 0.93634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.57 37.16 0.36 -0.84 16 2 C 0.09 0.90 3.43 -26.68 -0.09 0.81 16 3 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 4 C 0.02 0.19 4.95 -3.71 -0.02 0.17 16 5 N -0.54 -5.52 4.99 -242.59 -1.21 -6.73 16 6 C 0.02 0.19 9.61 60.07 0.58 0.77 16 7 C 0.03 0.31 4.90 -3.71 -0.02 0.29 16 8 C 0.08 1.08 3.22 -27.83 -0.09 0.99 16 9 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 10 C 0.50 8.48 7.18 -10.99 -0.08 8.40 16 11 O -0.53 -11.17 15.84 -14.28 -0.23 -11.39 16 12 N -0.73 -11.73 2.73 -53.66 -0.15 -11.88 16 13 C 0.14 2.67 3.15 -67.78 -0.21 2.45 16 14 C -0.12 -2.57 5.42 -26.30 -0.14 -2.72 16 15 C 0.18 3.90 3.16 -65.72 -0.21 3.69 16 16 H 0.11 2.83 6.28 -51.93 -0.33 2.51 16 17 C -0.17 -2.93 5.78 -24.93 -0.14 -3.07 16 18 C -0.16 -2.57 5.78 -24.93 -0.14 -2.71 16 19 C 0.15 2.86 4.29 -65.99 -0.28 2.58 16 20 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 21 C -0.14 -2.54 5.47 -26.54 -0.15 -2.69 16 22 N -0.58 -13.52 2.83 -153.03 -0.43 -13.95 16 23 C -0.22 -5.83 10.38 -15.06 -0.16 -5.99 16 24 H 0.08 1.93 7.84 -52.49 -0.41 1.51 16 25 C 0.00 -0.11 5.43 -17.43 -0.09 -0.20 16 26 N -0.91 -24.91 10.60 55.49 0.59 -24.32 16 27 Si 0.91 21.20 29.56 -169.99 -5.03 16.18 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 30 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 31 O -0.35 -5.13 9.65 -55.07 -0.53 -5.66 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.59 8.13 -51.93 -0.42 0.16 16 40 H 0.09 1.02 7.09 -51.92 -0.37 0.65 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.43 6.19 1.78 -65.29 -0.12 6.07 16 43 H 0.08 1.67 6.90 -51.93 -0.36 1.31 16 44 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.09 2.06 8.04 -51.93 -0.42 1.64 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.07 1.12 4.35 -51.93 -0.23 0.90 16 48 H 0.08 1.10 5.25 -51.93 -0.27 0.82 16 49 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 51 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 52 H 0.25 6.82 8.31 -40.82 -0.34 6.49 16 LS Contribution 383.46 15.07 5.78 5.78 Total: -1.00 -30.53 383.46 -10.92 -41.45 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -8.82 Total: 8.60 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -0.89 Total: 1.93 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: -1.20 Total: -56.88 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.76 Total: -17.05 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.53 -10.92 -41.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021297021.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.968 kcal (2) G-P(sol) polarization free energy of solvation -30.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds