Wall clock time and date at job start Tue Mar 31 2020 20:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.50344 * 2 1 4 4 C 1.53101 * 109.54287 * 239.89321 * 2 1 3 5 5 N 1.47012 * 109.25664 * 183.19575 * 4 2 1 6 6 C 1.46897 * 110.99898 * 182.39198 * 5 4 2 7 7 C 1.47009 * 110.75502 * 58.61105 * 5 4 2 8 8 C 1.53095 * 109.26236 * 301.38839 * 7 5 4 9 9 H 1.09003 * 109.50257 * 296.91242 * 8 7 5 10 10 C 1.50698 * 109.50842 * 176.82403 * 8 7 5 11 11 O 1.21283 * 119.99912 * 244.99528 * 10 8 7 12 12 N 1.34777 * 119.99951 * 64.99930 * 10 8 7 13 13 C 1.46944 * 120.44060 * 359.72325 * 12 10 8 14 14 C 1.54069 * 108.30040 * 125.72077 * 13 12 10 15 15 H 1.08998 * 110.52516 * 172.26470 * 14 13 12 16 16 C 1.53376 * 109.34613 * 294.23849 * 14 13 12 17 17 C 1.53013 * 109.24937 * 60.52515 * 16 14 13 18 18 C 1.52917 * 110.29422 * 59.71603 * 17 16 14 19 19 C 1.53365 * 109.76318 * 300.63727 * 18 17 16 20 20 H 1.09012 * 111.08260 * 176.89077 * 19 18 17 21 21 C 1.46948 * 120.44211 * 179.97438 * 12 10 8 22 22 N 1.47563 * 107.98770 * 55.43557 * 19 18 17 23 23 C 1.36938 * 121.61054 * 122.25794 * 22 19 18 24 24 H 1.07997 * 119.99990 * 152.06117 * 23 22 19 25 25 C 1.38812 * 120.00302 * 332.06099 * 23 22 19 26 26 N 1.31626 * 119.99967 * 341.79726 * 25 23 22 27 27 Si 1.86796 * 120.00483 * 161.79698 * 25 23 22 28 28 H 1.48502 * 109.47309 * 89.99726 * 27 25 23 29 29 H 1.48500 * 109.47608 * 210.00177 * 27 25 23 30 30 H 1.48500 * 109.47109 * 330.00134 * 27 25 23 31 31 O 1.43016 * 109.50430 * 120.08563 * 2 1 3 32 32 H 1.08997 * 109.47526 * 299.91375 * 1 2 3 33 33 H 1.09000 * 109.47219 * 59.91399 * 1 2 3 34 34 H 1.08998 * 109.47293 * 179.91196 * 1 2 3 35 35 H 1.09000 * 109.50739 * 63.25482 * 4 2 1 36 36 H 1.09002 * 109.50134 * 303.12907 * 4 2 1 37 37 H 1.09001 * 109.47303 * 296.36292 * 6 5 4 38 38 H 1.08999 * 109.47051 * 56.36228 * 6 5 4 39 39 H 1.08999 * 109.46916 * 176.36460 * 6 5 4 40 40 H 1.09003 * 109.50609 * 61.32305 * 7 5 4 41 41 H 1.08997 * 109.50825 * 181.40635 * 7 5 4 42 42 H 1.09000 * 109.62275 * 245.48216 * 13 12 10 43 43 H 1.09000 * 109.62777 * 6.04645 * 13 12 10 44 44 H 1.08989 * 109.50753 * 180.45684 * 16 14 13 45 45 H 1.09000 * 109.50387 * 300.55277 * 16 14 13 46 46 H 1.08989 * 109.41750 * 180.68385 * 17 16 14 47 47 H 1.09004 * 109.41583 * 300.49010 * 17 16 14 48 48 H 1.08998 * 109.99367 * 180.08852 * 18 17 16 49 49 H 1.09000 * 108.52232 * 60.27395 * 18 17 16 50 50 H 1.08999 * 109.62857 * 353.97025 * 21 12 10 51 51 H 1.09004 * 109.62610 * 114.34819 * 21 12 10 52 52 H 0.96995 * 120.00427 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0421 -0.7237 -1.2482 5 7 3.5102 -0.7873 -1.2036 6 6 4.0464 -1.4255 -2.4132 7 6 3.9649 -1.4868 0.0068 8 6 3.4334 -0.7555 1.2424 9 1 3.8527 0.2500 1.2785 10 6 3.8306 -1.5113 2.4842 11 8 2.9792 -2.0152 3.1857 12 7 5.1320 -1.6271 2.8152 13 6 6.1718 -1.0255 1.9690 14 6 7.0451 -0.1128 2.8510 15 1 7.9093 0.2458 2.2919 16 6 6.2018 1.0652 3.3546 17 6 5.0334 0.5303 4.1853 18 6 5.5543 -0.2690 5.3803 19 6 6.4084 -1.4431 4.8863 20 1 6.8362 -1.9961 5.7227 21 6 5.5302 -2.3614 4.0241 22 7 7.4748 -0.8995 4.0233 23 6 8.7992 -1.1143 4.2972 24 1 9.5215 -1.1272 3.4945 25 6 9.2134 -1.3153 5.6068 26 7 8.4359 -0.9545 6.6057 27 14 10.8741 -2.0980 5.9515 28 1 11.9100 -1.0384 6.0489 29 1 10.8116 -2.8483 7.2315 30 1 11.2210 -3.0293 4.8482 31 8 2.0075 -0.6758 1.1665 32 1 -0.3634 0.5125 0.8907 33 1 -0.3634 0.5152 -0.8892 34 1 -0.3634 -1.0276 -0.0016 35 1 1.7282 -0.1796 -2.1389 36 1 1.6347 -1.7343 -1.2757 37 1 3.7067 -2.4603 -2.4591 38 1 3.6946 -0.8882 -3.2939 39 1 5.1357 -1.4017 -2.3841 40 1 3.5882 -2.5096 -0.0007 41 1 5.0545 -1.5004 0.0318 42 1 6.7861 -1.8114 1.5295 43 1 5.7057 -0.4366 1.1790 44 1 6.8193 1.7170 3.9724 45 1 5.8170 1.6273 2.5037 46 1 4.4252 1.3647 4.5345 47 1 4.4225 -0.1292 3.5689 48 1 4.7183 -0.6488 5.9676 49 1 6.1643 0.3900 5.9983 50 1 4.6420 -2.6514 4.5856 51 1 6.0925 -3.2520 3.7430 52 1 8.7254 -1.0946 7.5208 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039677133.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:23:03 Heat of formation + Delta-G solvation = -12.362757 kcal Electronic energy + Delta-G solvation = -32830.215786 eV Core-core repulsion = 28831.747579 eV Total energy + Delta-G solvation = -3998.468207 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.98852 -39.49220 -37.54445 -35.89214 -34.14788 -33.08614 -32.72288 -31.80694 -30.52633 -29.40541 -27.33901 -26.95967 -25.64399 -24.90964 -23.49721 -22.64024 -21.54027 -21.24817 -20.73659 -19.45425 -18.31390 -17.32081 -16.67162 -16.31397 -16.21443 -15.74528 -15.36558 -15.04273 -14.72412 -14.51066 -14.21461 -13.96886 -13.67081 -13.52671 -13.14232 -12.99453 -12.89414 -12.81290 -12.58615 -12.46591 -12.40397 -12.10394 -12.05658 -11.90202 -11.64128 -11.35646 -11.31226 -11.18287 -10.90160 -10.84135 -10.70288 -10.34090 -10.17591 -10.03440 -9.92545 -9.73921 -9.54964 -9.44816 -9.16655 -8.70792 -8.52849 -7.90356 -6.63651 -5.84444 -3.28149 2.83293 2.96496 3.33806 3.42151 3.43198 3.53992 3.91624 4.42461 4.51492 4.62766 4.66383 4.84253 4.95504 5.04168 5.13198 5.14186 5.18605 5.26102 5.30523 5.33327 5.41104 5.51027 5.58817 5.60562 5.63483 5.68408 5.73694 5.81554 5.87346 5.89746 5.95293 6.01031 6.14651 6.28768 6.44670 6.45931 6.50844 6.58468 6.61964 6.63479 6.72002 6.88240 6.94072 7.05191 7.09281 7.14931 7.50730 7.60668 7.73064 7.85462 8.34807 8.51833 9.10937 9.73332 10.35158 11.22166 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020825 B = 0.003577 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.203919 B = 7825.348312 C = 8394.681886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.086 3.914 3 H 0.069 0.931 4 C 0.021 3.979 5 N -0.540 5.540 6 C 0.025 3.975 7 C 0.021 3.979 8 C 0.080 3.920 9 H 0.092 0.908 10 C 0.522 3.478 11 O -0.531 6.531 12 N -0.586 5.586 13 C 0.086 3.914 14 C 0.152 3.848 15 H 0.078 0.922 16 C -0.123 4.123 17 C -0.136 4.136 18 C -0.113 4.113 19 C 0.179 3.821 20 H 0.116 0.884 21 C 0.094 3.906 22 N -0.578 5.578 23 C -0.253 4.253 24 H 0.067 0.933 25 C 0.006 3.994 26 N -0.894 5.894 27 Si 0.901 3.099 28 H -0.288 1.288 29 H -0.290 1.290 30 H -0.280 1.280 31 O -0.352 6.352 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.044 0.956 37 H 0.027 0.973 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.048 0.952 41 H 0.102 0.898 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.040 0.960 46 H 0.033 0.967 47 H 0.071 0.929 48 H 0.038 0.962 49 H 0.071 0.929 50 H 0.080 0.920 51 H 0.061 0.939 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.481 1.567 -16.102 19.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.028 3.972 3 H 0.087 0.913 4 C -0.107 4.107 5 N -0.264 5.264 6 C -0.123 4.123 7 C -0.107 4.107 8 C 0.018 3.982 9 H 0.109 0.891 10 C 0.309 3.691 11 O -0.407 6.407 12 N -0.320 5.320 13 C -0.038 4.038 14 C 0.043 3.957 15 H 0.096 0.904 16 C -0.162 4.162 17 C -0.174 4.174 18 C -0.152 4.152 19 C 0.072 3.928 20 H 0.134 0.866 21 C -0.029 4.029 22 N -0.299 5.299 23 C -0.382 4.382 24 H 0.085 0.915 25 C -0.193 4.193 26 N -0.538 5.538 27 Si 0.731 3.269 28 H -0.215 1.215 29 H -0.216 1.216 30 H -0.206 1.206 31 O -0.271 6.271 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.062 0.938 37 H 0.046 0.954 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.120 0.880 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.059 0.941 46 H 0.052 0.948 47 H 0.089 0.911 48 H 0.057 0.943 49 H 0.090 0.910 50 H 0.099 0.901 51 H 0.079 0.921 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.797 1.655 -15.378 18.863 hybrid contribution 0.837 -0.937 -0.007 1.257 sum -9.960 0.718 -15.385 18.342 Atomic orbital electron populations 1.21721 0.92450 1.03114 1.02727 1.22220 0.95122 0.95739 0.84128 0.91333 1.22890 0.87808 1.00461 0.99563 1.62222 1.09074 1.52735 1.02395 1.22390 1.01021 0.96932 0.91975 1.22931 1.02144 0.96280 0.89345 1.21946 0.83267 0.99941 0.93039 0.89072 1.19655 0.82823 0.80731 0.85916 1.90694 1.49466 1.47923 1.52648 1.48076 1.04482 1.53368 1.26089 1.22723 0.90357 0.97489 0.93257 1.21288 0.94490 0.89874 0.90005 0.90385 1.21950 0.97600 0.98134 0.98511 1.21994 0.97594 0.98993 0.98814 1.21742 0.98051 0.98853 0.96514 1.21137 0.86446 0.92239 0.92954 0.86619 1.22547 0.99519 0.95197 0.85660 1.44415 1.02053 1.57131 1.26296 1.19104 0.83638 1.44032 0.91416 0.91536 1.25023 0.97641 1.00715 0.95970 1.69986 1.37452 1.48039 0.98298 0.86330 0.83912 0.79249 0.77418 1.21497 1.21601 1.20553 1.88124 1.18533 1.78201 1.42206 0.91242 0.90911 0.91782 0.89494 0.93763 0.95427 0.91046 0.90770 0.93385 0.87995 0.91349 0.90492 0.92036 0.94137 0.94850 0.91067 0.94334 0.91009 0.90131 0.92078 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.57 37.16 0.36 -0.92 16 2 C 0.09 0.97 3.42 -26.68 -0.09 0.88 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 4 C 0.02 0.21 4.95 -3.71 -0.02 0.19 16 5 N -0.54 -5.74 4.98 -242.60 -1.21 -6.95 16 6 C 0.02 0.21 9.60 60.06 0.58 0.78 16 7 C 0.02 0.26 4.51 -3.72 -0.02 0.25 16 8 C 0.08 1.18 2.35 -27.83 -0.07 1.12 16 9 H 0.09 1.31 7.45 -51.93 -0.39 0.92 16 10 C 0.52 9.45 4.48 -10.99 -0.05 9.40 16 11 O -0.53 -11.56 15.90 -14.26 -0.23 -11.78 16 12 N -0.59 -10.37 1.64 -171.97 -0.28 -10.65 16 13 C 0.09 1.36 4.57 -3.24 -0.01 1.35 16 14 C 0.15 2.85 3.58 -66.59 -0.24 2.61 16 15 H 0.08 1.42 8.01 -51.93 -0.42 1.00 16 16 C -0.12 -2.26 5.63 -26.53 -0.15 -2.41 16 17 C -0.14 -2.66 5.56 -26.77 -0.15 -2.81 16 18 C -0.11 -2.47 5.53 -26.58 -0.15 -2.61 16 19 C 0.18 4.01 2.66 -66.87 -0.18 3.84 16 20 H 0.12 2.95 5.90 -51.92 -0.31 2.64 16 21 C 0.09 1.86 5.89 -3.51 -0.02 1.84 16 22 N -0.58 -13.15 2.53 -155.17 -0.39 -13.54 16 23 C -0.25 -6.39 9.71 -15.06 -0.15 -6.54 16 24 H 0.07 1.65 7.89 -52.49 -0.41 1.24 16 25 C 0.01 0.15 4.98 -17.43 -0.09 0.06 16 26 N -0.89 -24.29 10.98 55.49 0.61 -23.68 16 27 Si 0.90 20.70 29.59 -169.99 -5.03 15.67 16 28 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 29 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 30 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 31 O -0.35 -5.48 9.65 -55.05 -0.53 -6.01 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.03 0.23 8.14 -51.93 -0.42 -0.20 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.10 1.18 5.40 -51.93 -0.28 0.90 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.08 1.02 4.55 -51.93 -0.24 0.78 16 44 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.03 0.63 8.14 -51.94 -0.42 0.21 16 47 H 0.07 1.38 2.64 -51.93 -0.14 1.24 16 48 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.07 1.77 7.97 -51.93 -0.41 1.36 16 50 H 0.08 1.64 6.99 -51.93 -0.36 1.28 16 51 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 52 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 378.96 15.07 5.71 5.71 Total: -1.00 -30.04 378.96 -10.64 -40.68 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -8.85 Total: 3.55 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -0.44 Total: 7.01 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -1.27 Total: -54.83 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.76 Total: -17.79 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.04 -10.64 -40.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039677133.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.320 kcal (2) G-P(sol) polarization free energy of solvation -30.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds