Wall clock time and date at job start Tue Mar 31 2020 20:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.50626 * 2 1 4 4 C 1.53095 * 109.50701 * 239.86458 * 2 1 3 5 5 N 1.47008 * 109.25878 * 183.21482 * 4 2 1 6 6 C 1.46905 * 111.00406 * 182.39337 * 5 4 2 7 7 C 1.47017 * 110.75373 * 58.61859 * 5 4 2 8 8 C 1.53102 * 109.25716 * 301.38674 * 7 5 4 9 9 H 1.08998 * 109.53770 * 296.89261 * 8 7 5 10 10 C 1.50693 * 109.50620 * 176.78028 * 8 7 5 11 11 O 1.21280 * 119.99901 * 250.23345 * 10 8 7 12 12 N 1.34775 * 120.00077 * 70.23820 * 10 8 7 13 13 C 1.44772 * 120.03530 * 175.18744 * 12 10 8 14 14 C 1.51429 * 112.65658 * 264.18602 * 13 12 10 15 15 C 1.51752 * 112.77232 * 286.01155 * 14 13 12 16 16 H 1.09002 * 112.57382 * 187.01477 * 15 14 13 17 17 C 1.55215 * 103.55179 * 308.34549 * 15 14 13 18 18 C 1.53960 * 105.23642 * 98.14739 * 17 15 14 19 19 C 1.49963 * 105.24535 * 359.69115 * 18 17 15 20 20 H 1.08999 * 105.70399 * 130.24697 * 19 18 17 21 21 C 1.50422 * 120.03162 * 355.21137 * 12 10 8 22 22 N 1.48046 * 108.64656 * 62.38579 * 15 14 13 23 23 C 1.36931 * 127.78647 * 95.62287 * 22 15 14 24 24 H 1.07999 * 119.99974 * 359.97438 * 23 22 15 25 25 C 1.38817 * 120.00341 * 180.02562 * 23 22 15 26 26 N 1.31612 * 119.99542 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 119.99989 * 180.02562 * 25 23 22 28 28 H 1.48492 * 109.47062 * 59.99916 * 27 25 23 29 29 H 1.48499 * 109.46920 * 180.02562 * 27 25 23 30 30 H 1.48506 * 109.46996 * 299.99497 * 27 25 23 31 31 O 1.43013 * 109.25940 * 56.84246 * 8 7 5 32 32 H 1.08997 * 109.46921 * 299.91678 * 1 2 3 33 33 H 1.09001 * 109.47024 * 59.91321 * 1 2 3 34 34 H 1.08999 * 109.47048 * 179.91605 * 1 2 3 35 35 H 1.09000 * 109.50698 * 303.15336 * 4 2 1 36 36 H 1.09007 * 109.50387 * 63.28225 * 4 2 1 37 37 H 1.08997 * 109.46835 * 63.95403 * 6 5 4 38 38 H 1.08993 * 109.47047 * 183.95413 * 6 5 4 39 39 H 1.09001 * 109.46589 * 303.96081 * 6 5 4 40 40 H 1.08998 * 109.50767 * 181.45030 * 7 5 4 41 41 H 1.09005 * 109.50297 * 61.31510 * 7 5 4 42 42 H 1.09000 * 108.84103 * 24.99834 * 13 12 10 43 43 H 1.08996 * 108.84834 * 143.46258 * 13 12 10 44 44 H 1.08996 * 108.82462 * 165.16232 * 14 13 12 45 45 H 1.08999 * 108.81938 * 46.85774 * 14 13 12 46 46 H 1.09002 * 110.29149 * 339.20556 * 17 15 14 47 47 H 1.08995 * 110.36958 * 217.13201 * 17 15 14 48 48 H 1.08993 * 110.28914 * 118.63232 * 18 17 15 49 49 H 1.08997 * 110.29073 * 240.74779 * 18 17 15 50 50 H 1.09000 * 109.52016 * 30.67469 * 21 12 10 51 51 H 1.08994 * 109.57128 * 270.51725 * 21 12 10 52 52 H 0.97000 * 120.00093 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0413 -0.7245 -1.2480 5 7 3.5093 -0.7890 -1.2041 6 6 4.0447 -1.4280 -2.4137 7 6 3.9640 -1.4884 0.0065 8 6 3.4335 -0.7563 1.2420 9 1 3.8533 0.2489 1.2784 10 6 3.8297 -1.5125 2.4838 11 8 2.9876 -2.0954 3.1333 12 7 5.1199 -1.5410 2.8725 13 6 5.4870 -2.1782 4.1195 14 6 5.5961 -1.1957 5.2667 15 6 6.8443 -0.3364 5.1874 16 1 6.9833 0.2825 6.0739 17 6 7.9877 -1.3712 5.0115 18 6 8.2767 -1.4016 3.4995 19 6 7.3148 -0.4231 2.8944 20 1 7.9146 0.2207 2.2510 21 6 6.1797 -0.9102 2.0114 22 7 6.7835 0.4738 3.9498 23 6 6.3370 1.7607 3.8105 24 1 5.9726 2.3020 4.6712 25 6 6.3515 2.3694 2.5630 26 7 6.7951 1.7095 1.5141 27 14 5.7430 4.1253 2.3733 28 1 6.5620 5.0273 3.2221 29 1 5.8615 4.5393 0.9521 30 1 4.3212 4.2046 2.7945 31 8 2.0076 -0.6757 1.1665 32 1 -0.3633 0.5125 0.8907 33 1 -0.3633 0.5152 -0.8892 34 1 -0.3633 -1.0277 -0.0015 35 1 1.6332 -1.7349 -1.2752 36 1 1.7274 -0.1804 -2.1389 37 1 3.8062 -0.8162 -3.2836 38 1 5.1265 -1.5262 -2.3241 39 1 3.5985 -2.4155 -2.5306 40 1 5.0536 -1.5020 0.0314 41 1 3.5866 -2.5110 -0.0006 42 1 4.7343 -2.9266 4.3674 43 1 6.4484 -2.6755 3.9912 44 1 5.6100 -1.7505 6.2048 45 1 4.7208 -0.5461 5.2577 46 1 7.6641 -2.3540 5.3543 47 1 8.8746 -1.0535 5.5596 48 1 9.3034 -1.0920 3.3047 49 1 8.1004 -2.4007 3.1010 50 1 5.7533 -0.0669 1.4681 51 1 6.5596 -1.6458 1.3024 52 1 6.8056 2.1349 0.6424 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045802802.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:53 Heat of formation + Delta-G solvation = -17.636662 kcal Electronic energy + Delta-G solvation = -33224.257279 eV Core-core repulsion = 29225.560378 eV Total energy + Delta-G solvation = -3998.696901 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.27483 -39.26532 -37.71406 -35.55388 -33.93584 -33.43948 -32.60840 -31.59515 -29.60655 -29.23685 -27.16831 -26.96314 -25.86110 -24.55415 -23.88398 -22.39161 -21.99120 -20.37346 -19.69212 -19.31832 -18.17941 -17.18140 -16.58867 -16.02002 -15.71355 -15.51260 -15.16674 -15.01181 -14.84098 -14.74001 -14.10341 -13.86755 -13.78276 -13.31666 -12.94272 -12.70811 -12.64775 -12.51609 -12.35977 -12.14727 -12.06991 -11.94965 -11.66788 -11.49960 -11.37281 -11.27870 -11.07706 -10.96092 -10.84978 -10.79320 -10.75050 -10.50016 -10.22775 -10.01897 -9.69560 -9.54268 -9.44628 -9.33172 -8.99105 -8.64407 -8.32615 -7.75086 -6.93073 -5.77044 -3.14849 3.15866 3.37205 3.42751 3.42921 3.43953 3.90310 4.26229 4.43477 4.84011 4.98297 5.05163 5.17528 5.27274 5.30964 5.33283 5.41496 5.42334 5.50225 5.51442 5.57354 5.59977 5.63484 5.66971 5.70918 5.79818 5.87005 5.88838 5.95426 6.01400 6.07577 6.13395 6.18391 6.22500 6.28150 6.28620 6.40120 6.50561 6.65244 6.69147 6.81333 6.88118 6.96054 7.00086 7.08289 7.27659 7.38441 7.49094 7.59493 7.71720 8.14707 8.22560 8.90199 9.11040 9.70364 10.43461 11.28478 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010531 B = 0.005560 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.143258 B = 5034.955220 C = 6027.935661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.085 3.915 3 H 0.069 0.931 4 C 0.024 3.976 5 N -0.536 5.536 6 C 0.027 3.973 7 C 0.031 3.969 8 C 0.082 3.918 9 H 0.103 0.897 10 C 0.525 3.475 11 O -0.550 6.550 12 N -0.588 5.588 13 C 0.123 3.877 14 C -0.150 4.150 15 C 0.152 3.848 16 H 0.064 0.936 17 C -0.134 4.134 18 C -0.115 4.115 19 C 0.128 3.872 20 H 0.108 0.892 21 C 0.115 3.885 22 N -0.578 5.578 23 C -0.200 4.200 24 H 0.078 0.922 25 C -0.013 4.013 26 N -0.925 5.925 27 Si 0.910 3.090 28 H -0.287 1.287 29 H -0.289 1.289 30 H -0.287 1.287 31 O -0.358 6.358 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.041 0.959 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.023 0.977 40 H 0.100 0.900 41 H 0.040 0.960 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.053 0.947 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.054 0.946 48 H 0.061 0.939 49 H 0.056 0.944 50 H 0.131 0.869 51 H 0.033 0.967 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.418 -6.949 -5.022 8.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.027 3.973 3 H 0.087 0.913 4 C -0.104 4.104 5 N -0.260 5.260 6 C -0.121 4.121 7 C -0.097 4.097 8 C 0.021 3.979 9 H 0.120 0.880 10 C 0.311 3.689 11 O -0.429 6.429 12 N -0.321 5.321 13 C -0.001 4.001 14 C -0.191 4.191 15 C 0.044 3.956 16 H 0.082 0.918 17 C -0.173 4.173 18 C -0.153 4.153 19 C 0.022 3.978 20 H 0.125 0.875 21 C -0.007 4.007 22 N -0.301 5.301 23 C -0.327 4.327 24 H 0.096 0.904 25 C -0.207 4.207 26 N -0.575 5.575 27 Si 0.741 3.259 28 H -0.214 1.214 29 H -0.214 1.214 30 H -0.213 1.213 31 O -0.276 6.276 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.042 0.958 40 H 0.118 0.882 41 H 0.058 0.942 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.072 0.928 48 H 0.079 0.921 49 H 0.074 0.926 50 H 0.148 0.852 51 H 0.051 0.949 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.806 -6.608 -4.704 8.583 hybrid contribution -0.435 0.217 -0.415 0.639 sum -3.241 -6.392 -5.119 8.807 Atomic orbital electron populations 1.21707 0.92785 1.02797 1.02535 1.22182 0.94793 0.96002 0.84310 0.91332 1.22853 0.88053 1.00061 0.99472 1.62151 1.08735 1.52832 1.02306 1.22363 1.00747 0.96703 0.92245 1.22764 1.02177 0.95402 0.89384 1.21930 0.82404 1.00862 0.92710 0.87982 1.19863 0.82748 0.80585 0.85731 1.90613 1.50138 1.45313 1.56819 1.48536 1.06451 1.55681 1.21409 1.20683 1.00294 0.94789 0.84293 1.22114 1.01531 0.98727 0.96696 1.21226 0.92003 0.90757 0.91627 0.91794 1.22839 0.98931 0.98996 0.96556 1.21540 0.99364 0.98808 0.95579 1.20403 0.93185 0.91963 0.92281 0.87469 1.23731 0.88424 0.96539 0.91979 1.44903 1.73753 1.09974 1.01427 1.19010 1.33114 0.86414 0.94206 0.90397 1.24619 1.02162 0.98504 0.95419 1.69579 1.53028 1.35670 0.99200 0.86193 0.78552 0.84283 0.76840 1.21353 1.21438 1.21342 1.88057 1.19317 1.78148 1.42095 0.91403 0.91096 0.91967 0.94101 0.89781 0.91211 0.90879 0.95817 0.88172 0.94200 0.91598 0.90990 0.92868 0.92454 0.91951 0.92761 0.92058 0.92564 0.85197 0.94933 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.57 37.16 0.36 -1.38 16 2 C 0.09 1.33 3.43 -26.68 -0.09 1.24 16 3 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.02 0.33 4.94 -3.72 -0.02 0.31 16 5 N -0.54 -8.11 4.99 -242.59 -1.21 -9.32 16 6 C 0.03 0.33 9.63 60.07 0.58 0.91 16 7 C 0.03 0.53 4.67 -3.71 -0.02 0.51 16 8 C 0.08 1.64 2.40 -27.83 -0.07 1.58 16 9 H 0.10 2.28 7.05 -51.93 -0.37 1.91 16 10 C 0.52 11.47 7.05 -10.99 -0.08 11.39 16 11 O -0.55 -13.49 15.98 -14.12 -0.23 -13.71 16 12 N -0.59 -11.93 2.88 -173.40 -0.50 -12.43 16 13 C 0.12 2.29 5.08 -5.76 -0.03 2.26 16 14 C -0.15 -2.82 4.95 -28.16 -0.14 -2.96 16 15 C 0.15 2.94 4.27 -66.54 -0.28 2.66 16 16 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 17 C -0.13 -2.17 5.93 -25.06 -0.15 -2.32 16 18 C -0.11 -1.95 5.82 -27.74 -0.16 -2.11 16 19 C 0.13 2.66 1.88 -69.01 -0.13 2.53 16 20 H 0.11 2.57 5.88 -51.93 -0.31 2.27 16 21 C 0.11 2.31 4.32 -2.43 -0.01 2.30 16 22 N -0.58 -13.24 2.64 -157.34 -0.42 -13.65 16 23 C -0.20 -5.10 10.38 -15.06 -0.16 -5.26 16 24 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 25 C -0.01 -0.33 5.46 -17.43 -0.10 -0.42 16 26 N -0.92 -23.32 8.01 55.49 0.44 -22.87 16 27 Si 0.91 21.10 29.55 -169.99 -5.02 16.08 16 28 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 29 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 30 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 31 O -0.36 -7.12 9.67 -54.91 -0.53 -7.66 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 39 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.10 1.68 5.52 -51.93 -0.29 1.39 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.07 1.25 7.15 -51.93 -0.37 0.88 16 43 H 0.07 1.20 4.22 -51.93 -0.22 0.98 16 44 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.06 0.89 6.56 -51.93 -0.34 0.55 16 47 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.06 0.86 7.11 -51.93 -0.37 0.49 16 50 H 0.13 2.94 3.72 -51.93 -0.19 2.75 16 51 H 0.03 0.59 7.35 -51.93 -0.38 0.21 16 52 H 0.26 6.43 8.31 -40.82 -0.34 6.09 16 LS Contribution 377.56 15.07 5.69 5.69 Total: -1.00 -29.24 377.56 -10.98 -40.22 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -8.72 Total: 6.42 kcal Atomic # 6 Polarization: 11.72 SS G_CDS: -0.49 Total: 11.23 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -1.68 Total: -58.27 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.76 Total: -21.37 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.24 -10.98 -40.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045802802.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.584 kcal (2) G-P(sol) polarization free energy of solvation -29.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds