Wall clock time and date at job start Tue Mar 31 2020 20:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.50626 * 2 1 4 4 C 1.53095 * 109.50701 * 239.86458 * 2 1 3 5 5 N 1.47008 * 109.25878 * 183.21482 * 4 2 1 6 6 C 1.46905 * 111.00406 * 182.39337 * 5 4 2 7 7 C 1.47017 * 110.75373 * 58.61859 * 5 4 2 8 8 C 1.53102 * 109.25716 * 301.38674 * 7 5 4 9 9 H 1.08998 * 109.53770 * 296.89261 * 8 7 5 10 10 C 1.50693 * 109.50620 * 176.78028 * 8 7 5 11 11 O 1.21280 * 119.99901 * 250.23345 * 10 8 7 12 12 N 1.34775 * 120.00077 * 70.23820 * 10 8 7 13 13 C 1.44772 * 120.03530 * 175.18744 * 12 10 8 14 14 C 1.51429 * 112.65658 * 264.18602 * 13 12 10 15 15 C 1.51752 * 112.77232 * 286.01155 * 14 13 12 16 16 H 1.09002 * 112.57382 * 187.01477 * 15 14 13 17 17 C 1.55215 * 103.55179 * 308.34549 * 15 14 13 18 18 C 1.53960 * 105.23642 * 98.14739 * 17 15 14 19 19 C 1.49963 * 105.24535 * 359.69115 * 18 17 15 20 20 H 1.08999 * 105.70399 * 130.24697 * 19 18 17 21 21 C 1.50422 * 120.03162 * 355.21137 * 12 10 8 22 22 N 1.48046 * 108.64656 * 62.38579 * 15 14 13 23 23 C 1.36931 * 127.78647 * 95.62287 * 22 15 14 24 24 H 1.07999 * 119.99974 * 359.97438 * 23 22 15 25 25 C 1.38817 * 120.00341 * 180.02562 * 23 22 15 26 26 N 1.31612 * 119.99542 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 119.99989 * 180.02562 * 25 23 22 28 28 H 1.48492 * 109.47062 * 59.99916 * 27 25 23 29 29 H 1.48499 * 109.46920 * 180.02562 * 27 25 23 30 30 H 1.48506 * 109.46996 * 299.99497 * 27 25 23 31 31 O 1.43013 * 109.25940 * 56.84246 * 8 7 5 32 32 H 1.08997 * 109.46921 * 299.91678 * 1 2 3 33 33 H 1.09001 * 109.47024 * 59.91321 * 1 2 3 34 34 H 1.08999 * 109.47048 * 179.91605 * 1 2 3 35 35 H 1.09000 * 109.50698 * 303.15336 * 4 2 1 36 36 H 1.09007 * 109.50387 * 63.28225 * 4 2 1 37 37 H 1.08997 * 109.46835 * 63.95403 * 6 5 4 38 38 H 1.08993 * 109.47047 * 183.95413 * 6 5 4 39 39 H 1.09001 * 109.46589 * 303.96081 * 6 5 4 40 40 H 1.08998 * 109.50767 * 181.45030 * 7 5 4 41 41 H 1.09005 * 109.50297 * 61.31510 * 7 5 4 42 42 H 1.09000 * 108.84103 * 24.99834 * 13 12 10 43 43 H 1.08996 * 108.84834 * 143.46258 * 13 12 10 44 44 H 1.08996 * 108.82462 * 165.16232 * 14 13 12 45 45 H 1.08999 * 108.81938 * 46.85774 * 14 13 12 46 46 H 1.09002 * 110.29149 * 339.20556 * 17 15 14 47 47 H 1.08995 * 110.36958 * 217.13201 * 17 15 14 48 48 H 1.08993 * 110.28914 * 118.63232 * 18 17 15 49 49 H 1.08997 * 110.29073 * 240.74779 * 18 17 15 50 50 H 1.09000 * 109.52016 * 30.67469 * 21 12 10 51 51 H 1.08994 * 109.57128 * 270.51725 * 21 12 10 52 52 H 0.97000 * 120.00093 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0413 -0.7245 -1.2480 5 7 3.5093 -0.7890 -1.2041 6 6 4.0447 -1.4280 -2.4137 7 6 3.9640 -1.4884 0.0065 8 6 3.4335 -0.7563 1.2420 9 1 3.8533 0.2489 1.2784 10 6 3.8297 -1.5125 2.4838 11 8 2.9876 -2.0954 3.1333 12 7 5.1199 -1.5410 2.8725 13 6 5.4870 -2.1782 4.1195 14 6 5.5961 -1.1957 5.2667 15 6 6.8443 -0.3364 5.1874 16 1 6.9833 0.2825 6.0739 17 6 7.9877 -1.3712 5.0115 18 6 8.2767 -1.4016 3.4995 19 6 7.3148 -0.4231 2.8944 20 1 7.9146 0.2207 2.2510 21 6 6.1797 -0.9102 2.0114 22 7 6.7835 0.4738 3.9498 23 6 6.3370 1.7607 3.8105 24 1 5.9726 2.3020 4.6712 25 6 6.3515 2.3694 2.5630 26 7 6.7951 1.7095 1.5141 27 14 5.7430 4.1253 2.3733 28 1 6.5620 5.0273 3.2221 29 1 5.8615 4.5393 0.9521 30 1 4.3212 4.2046 2.7945 31 8 2.0076 -0.6757 1.1665 32 1 -0.3633 0.5125 0.8907 33 1 -0.3633 0.5152 -0.8892 34 1 -0.3633 -1.0277 -0.0015 35 1 1.6332 -1.7349 -1.2752 36 1 1.7274 -0.1804 -2.1389 37 1 3.8062 -0.8162 -3.2836 38 1 5.1265 -1.5262 -2.3241 39 1 3.5985 -2.4155 -2.5306 40 1 5.0536 -1.5020 0.0314 41 1 3.5866 -2.5110 -0.0006 42 1 4.7343 -2.9266 4.3674 43 1 6.4484 -2.6755 3.9912 44 1 5.6100 -1.7505 6.2048 45 1 4.7208 -0.5461 5.2577 46 1 7.6641 -2.3540 5.3543 47 1 8.8746 -1.0535 5.5596 48 1 9.3034 -1.0920 3.3047 49 1 8.1004 -2.4007 3.1010 50 1 5.7533 -0.0669 1.4681 51 1 6.5596 -1.6458 1.3024 52 1 6.8056 2.1349 0.6424 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045802802.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:52 Heat of formation + Delta-G solvation = -35.821531 kcal Electronic energy + Delta-G solvation = -33225.045834 eV Core-core repulsion = 29225.560378 eV Total energy + Delta-G solvation = -3999.485456 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.82034 -40.68850 -39.32321 -36.83219 -35.61938 -35.14045 -33.96724 -33.15994 -31.31286 -30.62428 -28.62900 -28.06718 -27.42273 -25.95273 -25.67183 -23.64381 -23.39509 -21.66970 -21.21737 -21.00455 -19.77550 -18.86079 -18.13301 -17.47543 -17.17428 -16.96536 -16.64162 -16.55547 -16.38014 -16.10563 -15.75302 -15.35246 -15.22778 -14.77320 -14.53657 -14.19661 -14.00422 -13.87204 -13.55617 -13.51150 -13.35520 -13.14143 -13.07829 -12.97750 -12.84522 -12.75674 -12.65739 -12.61600 -12.50401 -12.24509 -12.20198 -11.98949 -11.78716 -11.57191 -11.42616 -11.21806 -10.95245 -10.73335 -10.69434 -10.44975 -9.47526 -9.40910 -8.75371 -7.70760 -5.07668 1.46205 1.49421 1.49536 1.53143 1.90840 2.51874 2.70421 2.85560 3.36577 3.51379 3.66169 3.70720 3.74088 3.89463 3.97090 4.05608 4.12054 4.18964 4.25213 4.30148 4.32624 4.39590 4.47643 4.54364 4.55473 4.60016 4.62366 4.67469 4.70615 4.74177 4.81300 4.88457 4.90624 4.97482 4.99338 5.11870 5.15547 5.18562 5.25854 5.28990 5.38931 5.55506 5.57672 5.74180 5.77871 5.87240 5.94191 5.96795 6.09425 6.38759 6.49478 7.18710 7.23665 7.83478 8.57364 9.30419 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010531 B = 0.005560 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.143258 B = 5034.955220 C = 6027.935661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.072 3.928 3 H 0.053 0.947 4 C 0.029 3.971 5 N -0.554 5.554 6 C 0.028 3.972 7 C 0.046 3.954 8 C 0.090 3.910 9 H 0.069 0.931 10 C 0.515 3.485 11 O -0.584 6.584 12 N -0.583 5.583 13 C 0.118 3.882 14 C -0.140 4.140 15 C 0.140 3.860 16 H 0.060 0.940 17 C -0.121 4.121 18 C -0.111 4.111 19 C 0.133 3.867 20 H 0.074 0.926 21 C 0.120 3.880 22 N -0.598 5.598 23 C -0.215 4.215 24 H 0.065 0.935 25 C -0.047 4.047 26 N -0.924 5.924 27 Si 0.953 3.047 28 H -0.285 1.285 29 H -0.289 1.289 30 H -0.297 1.297 31 O -0.385 6.385 32 H 0.057 0.943 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.035 0.965 40 H 0.099 0.901 41 H 0.039 0.961 42 H 0.062 0.938 43 H 0.102 0.898 44 H 0.086 0.914 45 H 0.012 0.988 46 H 0.092 0.908 47 H 0.068 0.932 48 H 0.068 0.932 49 H 0.082 0.918 50 H 0.105 0.895 51 H 0.057 0.943 52 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.732 -8.607 -5.971 10.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.015 3.985 3 H 0.072 0.928 4 C -0.099 4.099 5 N -0.278 5.278 6 C -0.120 4.120 7 C -0.083 4.083 8 C 0.029 3.971 9 H 0.087 0.913 10 C 0.302 3.698 11 O -0.466 6.466 12 N -0.315 5.315 13 C -0.005 4.005 14 C -0.181 4.181 15 C 0.033 3.967 16 H 0.078 0.922 17 C -0.160 4.160 18 C -0.149 4.149 19 C 0.027 3.973 20 H 0.091 0.909 21 C -0.001 4.001 22 N -0.321 5.321 23 C -0.345 4.345 24 H 0.083 0.917 25 C -0.241 4.241 26 N -0.574 5.574 27 Si 0.784 3.216 28 H -0.211 1.211 29 H -0.215 1.215 30 H -0.225 1.225 31 O -0.304 6.304 32 H 0.076 0.924 33 H 0.123 0.877 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.132 0.868 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.054 0.946 40 H 0.117 0.883 41 H 0.057 0.943 42 H 0.081 0.919 43 H 0.120 0.880 44 H 0.104 0.896 45 H 0.031 0.969 46 H 0.110 0.890 47 H 0.087 0.913 48 H 0.087 0.913 49 H 0.101 0.899 50 H 0.122 0.878 51 H 0.075 0.925 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.087 -8.275 -5.656 10.238 hybrid contribution -0.683 0.799 -0.095 1.056 sum -2.770 -7.475 -5.750 9.829 Atomic orbital electron populations 1.21726 0.90262 1.03357 1.03746 1.22547 0.96791 0.95147 0.84039 0.92849 1.22866 0.87205 1.00401 0.99383 1.62164 1.09783 1.53275 1.02615 1.22444 1.00784 0.97495 0.91240 1.22534 1.01796 0.94858 0.89081 1.21718 0.82831 0.99047 0.93536 0.91293 1.20280 0.82956 0.80406 0.86134 1.90574 1.51020 1.47051 1.57928 1.48615 1.06036 1.54970 1.21906 1.20873 1.01585 0.94569 0.83427 1.22047 0.99287 0.98250 0.98493 1.21451 0.93807 0.91212 0.90263 0.92223 1.22757 0.97997 0.99143 0.96096 1.21521 0.98479 0.98954 0.95936 1.20488 0.93085 0.92171 0.91553 0.90872 1.23513 0.88055 0.96430 0.92128 1.45059 1.73744 1.09730 1.03531 1.19075 1.33401 0.88064 0.93913 0.91722 1.25068 1.02887 1.00545 0.95560 1.69751 1.53074 1.35769 0.98770 0.85538 0.77437 0.82166 0.76448 1.21119 1.21493 1.22461 1.88027 1.19056 1.78758 1.44605 0.92400 0.87661 0.91670 0.93649 0.86784 0.89310 0.90808 0.94643 0.88332 0.94259 0.91936 0.88034 0.89566 0.96877 0.88998 0.91297 0.91316 0.89937 0.87763 0.92517 0.94123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 9.57 71.98 0.69 -2.47 16 2 C 0.07 2.25 3.43 30.63 0.10 2.36 16 3 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 4 C 0.03 0.76 4.94 86.31 0.43 1.18 16 5 N -0.55 -16.19 4.99 -921.42 -4.59 -20.79 16 6 C 0.03 0.60 9.63 127.69 1.23 1.83 16 7 C 0.05 1.56 4.67 86.31 0.40 1.96 16 8 C 0.09 3.74 2.40 29.88 0.07 3.81 16 9 H 0.07 3.30 7.05 -2.39 -0.02 3.28 16 10 C 0.52 23.15 7.05 87.65 0.62 23.77 16 11 O -0.58 -29.45 15.98 15.78 0.25 -29.20 16 12 N -0.58 -23.71 2.88 -820.91 -2.36 -26.08 16 13 C 0.12 4.23 5.08 86.19 0.44 4.67 16 14 C -0.14 -5.15 4.95 29.67 0.15 -5.00 16 15 C 0.14 5.27 4.27 45.04 0.19 5.46 16 16 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 17 C -0.12 -3.49 5.93 31.68 0.19 -3.30 16 18 C -0.11 -3.43 5.82 29.94 0.17 -3.25 16 19 C 0.13 5.45 1.88 43.28 0.08 5.53 16 20 H 0.07 3.52 5.88 -2.39 -0.01 3.51 16 21 C 0.12 4.81 4.32 85.23 0.37 5.18 16 22 N -0.60 -27.60 2.64 -651.72 -1.72 -29.32 16 23 C -0.22 -11.37 10.38 84.04 0.87 -10.50 16 24 H 0.06 3.47 7.83 -2.91 -0.02 3.45 16 25 C -0.05 -2.47 5.46 84.86 0.46 -2.00 16 26 N -0.92 -47.73 8.01 21.65 0.17 -47.55 16 27 Si 0.95 44.60 29.55 68.60 2.03 46.63 16 28 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 29 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 30 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 31 O -0.39 -15.87 9.67 -130.17 -1.26 -17.12 16 32 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.11 2.26 8.14 -2.38 -0.02 2.24 16 37 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.07 1.58 8.08 -2.39 -0.02 1.56 16 39 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.10 3.29 5.52 -2.39 -0.01 3.28 16 41 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 42 H 0.06 2.31 7.15 -2.39 -0.02 2.29 16 43 H 0.10 3.03 4.22 -2.39 -0.01 3.02 16 44 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 45 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.09 2.14 6.56 -2.39 -0.02 2.12 16 47 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 49 H 0.08 2.14 7.11 -2.39 -0.02 2.13 16 50 H 0.10 4.85 3.72 -2.39 -0.01 4.84 16 51 H 0.06 1.99 7.35 -2.39 -0.02 1.97 16 52 H 0.25 12.83 8.31 -92.71 -0.77 12.06 16 Total: -1.00 -66.79 377.56 -0.11 -66.90 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.91 Total: 27.32 kcal Atomic # 6 Polarization: 22.74 SS G_CDS: 6.47 Total: 29.21 kcal Atomic # 7 Polarization: -115.24 SS G_CDS: -8.50 Total: -123.74 kcal Atomic # 8 Polarization: -45.32 SS G_CDS: -1.01 Total: -46.32 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -66.79 -0.11 -66.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045802802.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.081 kcal (2) G-P(sol) polarization free energy of solvation -66.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds