Wall clock time and date at job start Tue Mar 31 2020 20:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08991 * 109.54416 * 2 1 4 4 C 1.53101 * 109.50584 * 239.88714 * 2 1 3 5 5 N 1.47010 * 109.25667 * 183.21870 * 4 2 1 6 6 C 1.46900 * 111.00089 * 182.39363 * 5 4 2 7 7 C 1.47017 * 110.75568 * 58.61838 * 5 4 2 8 8 C 1.53105 * 109.25558 * 301.38291 * 7 5 4 9 9 H 1.08995 * 109.50702 * 296.86845 * 8 7 5 10 10 C 1.50702 * 109.50577 * 176.78034 * 8 7 5 11 11 O 1.21282 * 120.00034 * 253.44032 * 10 8 7 12 12 N 1.34775 * 119.99661 * 73.43952 * 10 8 7 13 13 C 1.47999 * 120.39283 * 175.46272 * 12 10 8 14 14 C 1.53459 * 107.34644 * 232.82157 * 13 12 10 15 15 C 1.52732 * 108.44283 * 301.36215 * 14 13 12 16 16 C 1.53014 * 110.79714 * 63.77446 * 15 14 13 17 17 H 1.09000 * 112.09836 * 69.28048 * 16 15 14 18 18 C 1.45114 * 119.57649 * 355.15311 * 12 10 8 19 19 H 1.08992 * 109.97548 * 11.02609 * 18 12 10 20 20 C 1.54426 * 112.30434 * 248.17262 * 18 12 10 21 21 C 1.54558 * 102.45299 * 203.08670 * 20 18 12 22 22 N 1.47124 * 107.25316 * 21.67032 * 21 20 18 23 23 C 1.36941 * 125.76829 * 182.63102 * 22 21 20 24 24 H 1.08000 * 119.99784 * 179.97438 * 23 22 21 25 25 C 1.38814 * 119.99739 * 359.96031 * 23 22 21 26 26 N 1.31613 * 120.00321 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 119.99730 * 179.97438 * 25 23 22 28 28 H 1.48511 * 109.47002 * 90.00016 * 27 25 23 29 29 H 1.48498 * 109.47310 * 210.00019 * 27 25 23 30 30 H 1.48499 * 109.47309 * 330.00509 * 27 25 23 31 31 O 1.43013 * 109.25762 * 56.84946 * 8 7 5 32 32 H 1.08998 * 109.47208 * 180.11272 * 1 2 3 33 33 H 1.09001 * 109.46742 * 300.11078 * 1 2 3 34 34 H 1.09000 * 109.46610 * 60.11192 * 1 2 3 35 35 H 1.08997 * 109.50182 * 63.28526 * 4 2 1 36 36 H 1.08996 * 109.53896 * 303.17430 * 4 2 1 37 37 H 1.08998 * 109.46973 * 296.36929 * 6 5 4 38 38 H 1.09002 * 109.46860 * 56.36447 * 6 5 4 39 39 H 1.08997 * 109.47480 * 176.36360 * 6 5 4 40 40 H 1.08994 * 109.51240 * 181.45080 * 7 5 4 41 41 H 1.08998 * 109.50809 * 61.31458 * 7 5 4 42 42 H 1.09004 * 110.41833 * 113.11591 * 13 12 10 43 43 H 1.08996 * 109.54495 * 352.04264 * 13 12 10 44 44 H 1.09009 * 109.64131 * 181.67964 * 14 13 12 45 45 H 1.09002 * 109.81893 * 61.15504 * 14 13 12 46 46 H 1.09005 * 109.21583 * 303.43390 * 15 14 13 47 47 H 1.09007 * 109.21234 * 184.11324 * 15 14 13 48 48 H 1.08999 * 110.80893 * 321.33063 * 20 18 12 49 49 H 1.09001 * 110.80763 * 84.84527 * 20 18 12 50 50 H 1.08999 * 109.88786 * 262.25727 * 21 20 18 51 51 H 1.09002 * 110.01936 * 141.15150 * 21 20 18 52 52 H 0.97001 * 120.00314 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8947 1.0271 0.0000 4 6 2.0413 -0.7240 -1.2484 5 7 3.5093 -0.7886 -1.2044 6 6 4.0447 -1.4271 -2.4142 7 6 3.9640 -1.4885 0.0059 8 6 3.4335 -0.7568 1.2417 9 1 3.8541 0.2480 1.2782 10 6 3.8297 -1.5136 2.4833 11 8 2.9978 -2.1446 3.1002 12 7 5.1086 -1.4891 2.9079 13 6 5.4881 -2.1452 4.1791 14 6 6.2359 -1.1059 5.0250 15 6 7.4542 -0.6281 4.2375 16 6 7.0255 0.0911 2.9568 17 1 6.5480 1.0487 3.1645 18 6 6.1166 -0.8198 2.1069 19 1 5.6396 -0.2386 1.3178 20 6 7.1308 -1.8100 1.4941 21 6 8.3616 -0.9108 1.2382 22 7 8.2395 0.2582 2.1231 23 6 9.1015 1.3213 2.1684 24 1 8.9214 2.1335 2.8571 25 6 10.2069 1.3548 1.3294 26 7 10.4262 0.3651 0.4900 27 14 11.3823 2.8053 1.3907 28 1 12.4539 2.5325 2.3821 29 1 11.9881 3.0085 0.0502 30 1 10.6394 4.0280 1.7887 31 8 2.0076 -0.6763 1.1663 32 1 -0.3633 -1.0276 0.0020 33 1 -0.3633 0.5156 0.8890 34 1 -0.3632 0.5121 -0.8910 35 1 1.7274 -0.1796 -2.1389 36 1 1.6332 -1.7343 -1.2766 37 1 3.7042 -2.4615 -2.4601 38 1 3.6929 -0.8894 -3.2947 39 1 5.1340 -1.4040 -2.3856 40 1 5.0536 -1.5022 0.0309 41 1 3.5866 -2.5111 -0.0016 42 1 6.1357 -3.0007 3.9869 43 1 4.5900 -2.4718 4.7032 44 1 6.5600 -1.5602 5.9614 45 1 5.5810 -0.2603 5.2355 46 1 8.0723 -1.4873 3.9767 47 1 8.0352 0.0562 4.8559 48 1 7.3717 -2.6044 2.2005 49 1 6.7521 -2.2233 0.5593 50 1 8.3749 -0.5879 0.1972 51 1 9.2767 -1.4563 1.4687 52 1 11.1988 0.3883 -0.0961 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049547439.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:38 Heat of formation + Delta-G solvation = -32.294521 kcal Electronic energy + Delta-G solvation = -32238.797879 eV Core-core repulsion = 28239.465365 eV Total energy + Delta-G solvation = -3999.332514 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.82150 -39.40565 -37.94958 -35.83413 -34.94847 -33.54692 -32.43271 -32.09572 -29.60693 -29.04044 -28.16652 -27.22883 -25.58890 -24.48065 -23.94747 -22.60732 -21.96354 -20.73545 -20.48205 -19.92443 -18.25443 -17.33658 -17.05821 -16.48927 -16.16123 -15.77625 -15.46642 -15.24434 -14.78712 -14.54973 -14.34450 -14.29269 -13.80989 -13.67146 -13.38858 -13.16338 -12.87168 -12.84819 -12.54694 -12.46757 -12.32847 -12.15426 -11.97973 -11.89820 -11.80626 -11.35416 -11.29761 -11.03129 -10.99072 -10.83474 -10.81957 -10.66496 -10.49911 -10.14570 -10.07263 -9.88948 -9.71261 -9.66356 -9.37709 -8.67681 -8.58945 -8.33795 -6.92389 -5.76742 -3.10839 2.61323 2.79706 3.37155 3.42869 3.44240 3.62343 3.79520 4.41714 4.52550 4.63434 4.69943 4.88024 4.95614 5.05038 5.09290 5.16522 5.19952 5.25679 5.29223 5.31712 5.35143 5.40932 5.46542 5.48367 5.48720 5.53718 5.61910 5.64363 5.73592 5.78396 5.81533 5.83656 5.95745 6.07055 6.09059 6.13687 6.21119 6.29075 6.40780 6.46751 6.68895 6.69958 6.75255 6.81416 6.98451 7.04522 7.48953 7.50863 7.57466 7.75824 8.17072 8.28462 9.14950 9.74547 10.39460 11.34523 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012167 B = 0.003990 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.736398 B = 7015.211879 C = 8307.936148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.087 3.913 3 H 0.070 0.930 4 C 0.021 3.979 5 N -0.538 5.538 6 C 0.025 3.975 7 C 0.024 3.976 8 C 0.080 3.920 9 H 0.093 0.907 10 C 0.525 3.475 11 O -0.530 6.530 12 N -0.590 5.590 13 C 0.116 3.884 14 C -0.132 4.132 15 C -0.129 4.129 16 C 0.156 3.844 17 H 0.062 0.938 18 C 0.115 3.885 19 H 0.096 0.904 20 C -0.154 4.154 21 C 0.181 3.819 22 N -0.598 5.598 23 C -0.227 4.227 24 H 0.078 0.922 25 C -0.005 4.005 26 N -0.921 5.921 27 Si 0.911 3.089 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.281 1.281 31 O -0.356 6.356 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.043 0.957 37 H 0.026 0.974 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.104 0.896 41 H 0.047 0.953 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.064 0.936 49 H 0.060 0.940 50 H 0.053 0.947 51 H 0.043 0.957 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.742 -4.026 -1.816 15.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.028 3.972 3 H 0.088 0.912 4 C -0.107 4.107 5 N -0.262 5.262 6 C -0.123 4.123 7 C -0.105 4.105 8 C 0.018 3.982 9 H 0.111 0.889 10 C 0.311 3.689 11 O -0.406 6.406 12 N -0.324 5.324 13 C -0.005 4.005 14 C -0.171 4.171 15 C -0.169 4.169 16 C 0.048 3.952 17 H 0.080 0.920 18 C 0.010 3.990 19 H 0.114 0.886 20 C -0.193 4.193 21 C 0.056 3.944 22 N -0.322 5.322 23 C -0.355 4.355 24 H 0.096 0.904 25 C -0.201 4.201 26 N -0.568 5.568 27 Si 0.741 3.259 28 H -0.217 1.217 29 H -0.217 1.217 30 H -0.207 1.207 31 O -0.274 6.274 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.106 0.894 36 H 0.062 0.938 37 H 0.045 0.955 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.122 0.878 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.106 0.894 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.079 0.921 48 H 0.082 0.918 49 H 0.079 0.921 50 H 0.071 0.929 51 H 0.061 0.939 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.909 -3.879 -1.476 15.476 hybrid contribution 0.791 0.008 -0.359 0.868 sum -14.119 -3.870 -1.835 14.754 Atomic orbital electron populations 1.21722 0.92451 1.03068 1.02708 1.22235 0.95033 0.95813 0.84073 0.91193 1.22885 0.88020 1.00352 0.99488 1.62182 1.08801 1.52822 1.02402 1.22401 1.01429 0.96682 0.91782 1.22874 1.02420 0.95969 0.89219 1.21926 0.83301 1.00012 0.92927 0.88898 1.19978 0.82208 0.81222 0.85474 1.90670 1.50065 1.42447 1.57418 1.47850 1.06870 1.54674 1.22963 1.21882 0.99986 0.95162 0.83483 1.21927 0.98268 0.98758 0.98180 1.22101 0.96293 1.00958 0.97539 1.21358 0.88171 0.95326 0.90379 0.92030 1.22068 0.88848 0.94454 0.93671 0.88588 1.23207 0.98047 0.98556 0.99533 1.21178 0.91952 0.86059 0.95236 1.44707 1.24526 1.21077 1.41934 1.19026 1.02040 0.96903 1.17548 0.90402 1.24767 0.98601 0.98203 0.98557 1.69934 1.29607 1.31499 1.25801 0.86142 0.81032 0.81816 0.76896 1.21659 1.21696 1.20677 1.88079 1.18489 1.78352 1.42494 0.91798 0.91352 0.90837 0.89447 0.93833 0.95507 0.91000 0.90420 0.87817 0.93448 0.91221 0.89396 0.91249 0.91807 0.91799 0.92055 0.91754 0.92094 0.92923 0.93928 0.93726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.57 37.16 0.36 -0.92 16 2 C 0.09 1.00 3.43 -26.68 -0.09 0.91 16 3 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 4 C 0.02 0.22 4.95 -3.71 -0.02 0.21 16 5 N -0.54 -6.63 4.99 -242.60 -1.21 -7.84 16 6 C 0.02 0.26 9.60 60.06 0.58 0.84 16 7 C 0.02 0.32 4.59 -3.71 -0.02 0.30 16 8 C 0.08 1.19 2.36 -27.83 -0.07 1.12 16 9 H 0.09 1.38 7.05 -51.93 -0.37 1.01 16 10 C 0.53 8.72 7.02 -10.99 -0.08 8.64 16 11 O -0.53 -10.32 15.99 -13.97 -0.22 -10.54 16 12 N -0.59 -9.13 2.78 -164.06 -0.46 -9.59 16 13 C 0.12 1.65 6.21 -2.98 -0.02 1.63 16 14 C -0.13 -1.83 6.10 -26.63 -0.16 -1.99 16 15 C -0.13 -2.18 5.10 -26.86 -0.14 -2.32 16 16 C 0.16 2.94 3.59 -66.34 -0.24 2.70 16 17 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 18 C 0.11 1.88 2.19 -67.29 -0.15 1.74 16 19 H 0.10 1.59 4.69 -51.93 -0.24 1.35 16 20 C -0.15 -2.64 5.88 -25.17 -0.15 -2.79 16 21 C 0.18 4.02 5.19 -2.88 -0.01 4.00 16 22 N -0.60 -13.91 2.91 -162.19 -0.47 -14.38 16 23 C -0.23 -5.93 10.29 -15.06 -0.15 -6.09 16 24 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 25 C 0.00 -0.13 5.49 -17.43 -0.10 -0.23 16 26 N -0.92 -25.72 10.33 55.49 0.57 -25.14 16 27 Si 0.91 21.35 29.55 -169.99 -5.02 16.32 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 30 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 31 O -0.36 -5.42 9.68 -54.75 -0.53 -5.95 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.10 1.45 4.50 -51.93 -0.23 1.22 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.93 7.53 -51.93 -0.39 0.54 16 43 H 0.09 1.26 7.05 -51.93 -0.37 0.89 16 44 H 0.07 0.83 8.14 -51.92 -0.42 0.40 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.06 1.15 7.12 -51.93 -0.37 0.78 16 47 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.06 1.06 6.80 -51.93 -0.35 0.71 16 49 H 0.06 0.94 6.72 -51.93 -0.35 0.60 16 50 H 0.05 1.31 7.30 -51.93 -0.38 0.93 16 51 H 0.04 1.06 7.59 -51.93 -0.39 0.67 16 52 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 385.56 15.07 5.81 5.81 Total: -1.00 -30.54 385.56 -10.89 -41.43 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -8.91 Total: 2.12 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: -0.45 Total: 7.76 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: -1.56 Total: -56.95 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.75 Total: -16.49 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.54 -10.89 -41.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049547439.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.137 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds