Wall clock time and date at job start Tue Mar 31 2020 20:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 110.77449 * 2 1 4 4 C 1.54323 * 110.71811 * 123.23523 * 2 1 3 5 5 N 1.47026 * 107.26547 * 140.55789 * 4 2 1 6 6 C 1.34777 * 125.64655 * 181.01710 * 5 4 2 7 7 O 1.21284 * 119.99995 * 0.02562 * 6 5 4 8 8 C 1.50694 * 120.00134 * 180.02562 * 6 5 4 9 9 N 1.46501 * 109.47675 * 180.02562 * 8 6 5 10 10 C 1.44875 * 112.61549 * 89.99732 * 9 8 6 11 11 C 1.53184 * 111.78801 * 180.20561 * 10 9 8 12 12 C 1.53052 * 109.10328 * 279.36543 * 11 10 9 13 13 C 1.51483 * 111.50487 * 58.25712 * 12 11 10 14 14 C 1.52472 * 107.05428 * 66.74534 * 13 12 11 15 15 C 1.53076 * 110.86306 * 282.13410 * 14 13 12 16 16 C 1.32035 * 112.61361 * 269.77136 * 9 8 6 17 17 O 1.21281 * 118.29375 * 351.57979 * 16 9 8 18 18 C 1.47419 * 108.70433 * 1.06145 * 5 4 2 19 19 C 1.54907 * 104.83402 * 335.86712 * 18 5 4 20 20 H 1.08992 * 111.00631 * 278.90379 * 19 18 5 21 21 N 1.46499 * 111.00532 * 155.08480 * 19 18 5 22 22 C 1.36931 * 120.00122 * 86.45669 * 21 19 18 23 23 H 1.08002 * 120.00098 * 0.02562 * 22 21 19 24 24 C 1.38812 * 120.00429 * 180.02562 * 22 21 19 25 25 N 1.31624 * 119.99535 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00187 * 180.27849 * 24 22 21 27 27 H 1.48501 * 109.46922 * 269.71949 * 26 24 22 28 28 H 1.48496 * 109.47354 * 29.72145 * 26 24 22 29 29 H 1.48501 * 109.47428 * 149.72253 * 26 24 22 30 30 H 1.09009 * 109.47014 * 183.24308 * 1 2 3 31 31 H 1.09001 * 109.47348 * 303.23800 * 1 2 3 32 32 H 1.08991 * 109.47271 * 63.24110 * 1 2 3 33 33 H 1.08993 * 109.88657 * 21.14551 * 4 2 1 34 34 H 1.08999 * 110.01490 * 260.04594 * 4 2 1 35 35 H 1.09005 * 109.47423 * 300.00424 * 8 6 5 36 36 H 1.09001 * 109.47284 * 60.00692 * 8 6 5 37 37 H 1.09001 * 109.01449 * 300.80446 * 10 9 8 38 38 H 1.08995 * 109.01330 * 59.69149 * 10 9 8 39 39 H 1.08996 * 109.53171 * 39.25517 * 11 10 9 40 40 H 1.09000 * 109.52967 * 159.47675 * 11 10 9 41 41 H 1.08996 * 109.06904 * 178.77654 * 12 11 10 42 42 H 1.08995 * 109.07244 * 297.73555 * 12 11 10 43 43 H 1.09000 * 109.93902 * 186.12907 * 13 12 11 44 44 H 1.09000 * 109.94072 * 307.27865 * 13 12 11 45 45 H 1.08998 * 109.19601 * 42.48747 * 14 13 12 46 46 H 1.08994 * 109.20228 * 161.82078 * 14 13 12 47 47 H 1.08998 * 109.62057 * 83.92554 * 15 14 13 48 48 H 1.08998 * 109.61661 * 204.47928 * 15 14 13 49 49 H 1.09000 * 110.36706 * 217.03113 * 18 5 4 50 50 H 1.09000 * 110.46338 * 94.75754 * 18 5 4 51 51 H 0.97001 * 119.99790 * 266.45186 * 21 19 18 52 52 H 0.97005 * 119.99717 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0192 0.0000 4 6 2.0760 -0.7911 1.2073 5 7 3.2445 -1.5506 0.7390 6 6 3.9924 -2.3834 1.4898 7 8 3.7194 -2.5561 2.6588 8 6 5.1679 -3.0999 0.8768 9 7 5.8115 -3.9388 1.8908 10 6 5.2590 -5.2772 1.9390 11 6 5.9416 -6.1360 3.0081 12 6 7.2656 -6.6672 2.4537 13 6 8.1833 -5.5387 2.0308 14 6 8.5844 -4.7901 3.2971 15 6 7.4560 -3.8681 3.7659 16 6 6.7644 -3.3020 2.5463 17 8 7.0988 -2.2049 2.1523 18 6 3.4633 -1.2497 -0.6875 19 6 2.0790 -0.7955 -1.2138 20 1 1.4455 -1.6535 -1.4380 21 7 2.2214 0.0696 -2.3875 22 6 2.3174 -0.4821 -3.6370 23 1 2.2877 -1.5550 -3.7574 24 6 2.4529 0.3375 -4.7492 25 7 2.4887 1.6450 -4.6025 26 14 2.5761 -0.4149 -6.4545 27 1 4.0023 -0.6667 -6.7826 28 1 1.8272 -1.6969 -6.4852 29 1 1.9966 0.5208 -7.4514 30 1 -0.3633 -1.0261 0.0581 31 1 -0.3634 0.5633 0.8595 32 1 -0.3633 0.4627 -0.9175 33 1 1.3130 -1.4758 1.5776 34 1 2.3736 -0.1043 1.9997 35 1 4.8231 -3.7256 0.0535 36 1 5.8841 -2.3685 0.5021 37 1 4.1937 -5.2138 2.1610 38 1 5.3913 -5.7513 0.9665 39 1 6.1341 -5.5304 3.8937 40 1 5.2946 -6.9728 3.2711 41 1 7.7611 -7.2602 3.2223 42 1 7.0615 -7.3024 1.5918 43 1 9.0694 -5.9435 1.5419 44 1 7.6582 -4.8673 1.3513 45 1 8.8086 -5.5107 4.0835 46 1 9.4734 -4.1930 3.0941 47 1 6.7428 -4.4367 4.3626 48 1 7.8712 -3.0558 4.3625 49 1 3.7961 -2.1425 -1.2168 50 1 4.1936 -0.4484 -0.8002 51 1 2.2477 1.0332 -2.2794 52 1 2.5830 2.2178 -5.3797 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054702268.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:44 Heat of formation + Delta-G solvation = -39.361892 kcal Electronic energy + Delta-G solvation = -30830.972699 eV Core-core repulsion = 26831.333721 eV Total energy + Delta-G solvation = -3999.638978 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.33088 -39.57607 -37.57912 -37.27708 -35.31946 -34.07905 -32.56766 -32.02759 -30.75695 -29.83255 -27.77753 -27.47244 -26.23351 -25.38141 -23.96834 -22.40602 -21.71055 -21.14787 -19.91920 -19.19063 -18.86540 -17.42049 -17.19642 -16.79965 -16.56873 -16.26868 -15.80320 -15.48803 -14.80332 -14.65334 -14.30514 -14.08875 -13.90750 -13.64905 -13.47148 -13.12583 -13.01932 -12.97940 -12.86490 -12.75090 -12.61525 -12.33979 -12.02130 -11.86096 -11.68487 -11.64990 -11.54607 -11.13122 -11.10616 -11.05442 -11.01783 -10.75568 -10.62154 -10.27238 -10.26275 -9.96499 -9.94198 -9.75357 -9.74093 -9.05064 -8.74363 -8.33424 -7.10890 -5.87153 -3.18136 2.51400 2.80160 2.82362 3.37058 3.38454 3.43793 3.44987 4.30872 4.35698 4.41963 4.48455 4.55580 4.67290 4.68803 4.86598 4.91998 5.03985 5.10889 5.14515 5.18039 5.22043 5.29268 5.32292 5.44642 5.49184 5.52316 5.57573 5.63409 5.63551 5.64914 5.74323 5.75958 5.81367 5.81807 5.88523 5.93971 6.00266 6.01221 6.11351 6.19647 6.24353 6.34663 6.45993 6.53205 6.60790 6.86116 7.49260 7.60449 7.78478 8.06014 8.29758 8.36378 9.42210 9.95961 10.30909 11.34738 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013641 B = 0.002830 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.152541 B = 9892.814815 C =10985.574958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 H 0.085 0.915 4 C 0.118 3.882 5 N -0.611 5.611 6 C 0.516 3.484 7 O -0.551 6.551 8 C 0.062 3.938 9 N -0.581 5.581 10 C 0.127 3.873 11 C -0.151 4.151 12 C -0.119 4.119 13 C -0.138 4.138 14 C -0.114 4.114 15 C -0.143 4.143 16 C 0.536 3.464 17 O -0.550 6.550 18 C 0.070 3.930 19 C 0.178 3.822 20 H 0.065 0.935 21 N -0.711 5.711 22 C -0.249 4.249 23 H 0.072 0.928 24 C -0.008 4.008 25 N -0.928 5.928 26 Si 0.908 3.092 27 H -0.289 1.289 28 H -0.281 1.281 29 H -0.291 1.291 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.104 0.896 36 H 0.125 0.875 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.096 0.904 48 H 0.095 0.905 49 H 0.069 0.931 50 H 0.072 0.928 51 H 0.387 0.613 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.614 -16.044 15.967 23.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.133 4.133 3 H 0.103 0.897 4 C -0.005 4.005 5 N -0.345 5.345 6 C 0.304 3.696 7 O -0.430 6.430 8 C -0.065 4.065 9 N -0.312 5.312 10 C 0.005 3.995 11 C -0.188 4.188 12 C -0.157 4.157 13 C -0.176 4.176 14 C -0.152 4.152 15 C -0.182 4.182 16 C 0.325 3.675 17 O -0.428 6.428 18 C -0.056 4.056 19 C 0.066 3.934 20 H 0.083 0.917 21 N -0.350 5.350 22 C -0.379 4.379 23 H 0.090 0.910 24 C -0.204 4.204 25 N -0.576 5.576 26 Si 0.738 3.262 27 H -0.216 1.216 28 H -0.207 1.207 29 H -0.217 1.217 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.122 0.878 36 H 0.143 0.857 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.114 0.886 48 H 0.114 0.886 49 H 0.087 0.913 50 H 0.091 0.909 51 H 0.222 0.778 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.734 -15.782 16.321 23.681 hybrid contribution 0.083 -0.041 -1.025 1.029 sum 6.817 -15.823 15.296 23.039 Atomic orbital electron populations 1.21663 0.93912 1.01505 1.02052 1.22477 0.96436 0.99878 0.94517 0.89710 1.21952 0.87369 0.94314 0.96845 1.48508 1.29710 1.43728 1.12523 1.20626 0.83492 0.79265 0.86250 1.90644 1.71099 1.64871 1.16363 1.21626 0.95171 0.97450 0.92291 1.46602 1.34700 1.12554 1.37353 1.21294 0.97949 0.80335 0.99960 1.22298 0.97056 1.00059 0.99397 1.21399 0.95452 0.97852 1.00957 1.21581 0.99941 0.98285 0.97744 1.21442 0.97479 0.98148 0.98085 1.22302 0.98810 1.01131 0.95957 1.19717 0.78448 0.84768 0.84529 1.90742 1.63707 1.21197 1.67182 1.23562 1.02752 1.00898 0.78365 1.21346 0.91686 0.93701 0.86677 0.91715 1.42300 1.86870 1.05178 1.00699 1.19215 1.43230 0.91866 0.83637 0.91002 1.24767 1.02310 0.95342 0.98015 1.69662 1.56374 1.02073 1.29444 0.86194 0.77689 0.77985 0.84302 1.21591 1.20673 1.21728 0.92921 0.93200 0.91315 0.91767 0.92127 0.87758 0.85692 0.90981 0.91043 0.89295 0.90058 0.91724 0.91956 0.91224 0.90547 0.90871 0.91446 0.88563 0.88637 0.91304 0.90938 0.77810 0.93313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 9.16 37.16 0.34 -1.55 16 2 C -0.11 -1.79 3.17 -88.78 -0.28 -2.07 16 3 H 0.08 1.40 8.00 -51.93 -0.42 0.98 16 4 C 0.12 1.83 6.46 -3.06 -0.02 1.81 16 5 N -0.61 -9.96 3.33 -170.53 -0.57 -10.53 16 6 C 0.52 8.52 7.82 -10.99 -0.09 8.44 16 7 O -0.55 -10.43 16.68 5.55 0.09 -10.34 16 8 C 0.06 0.85 4.38 -5.20 -0.02 0.82 16 9 N -0.58 -7.06 1.50 -176.80 -0.27 -7.33 16 10 C 0.13 1.14 5.19 -4.82 -0.03 1.11 16 11 C -0.15 -1.03 5.63 -26.61 -0.15 -1.18 16 12 C -0.12 -0.74 5.21 -27.47 -0.14 -0.88 16 13 C -0.14 -1.08 5.64 -27.77 -0.16 -1.23 16 14 C -0.11 -0.88 5.61 -26.96 -0.15 -1.03 16 15 C -0.14 -1.41 5.54 -27.60 -0.15 -1.56 16 16 C 0.54 7.34 5.23 -11.95 -0.06 7.27 16 17 O -0.55 -9.78 15.59 5.56 0.09 -9.69 16 18 C 0.07 1.19 6.38 -2.53 -0.02 1.18 16 19 C 0.18 3.27 3.13 -65.78 -0.21 3.07 16 20 H 0.06 1.21 8.03 -51.93 -0.42 0.79 16 21 N -0.71 -16.44 5.28 -51.36 -0.27 -16.71 16 22 C -0.25 -6.43 9.98 -15.06 -0.15 -6.58 16 23 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 24 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 25 N -0.93 -26.84 13.06 55.49 0.72 -26.12 16 26 Si 0.91 21.41 29.55 -169.99 -5.02 16.39 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 30 H 0.05 0.70 8.06 -51.92 -0.42 0.28 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.95 7.76 -51.93 -0.40 0.55 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.10 1.16 7.49 -51.93 -0.39 0.77 16 36 H 0.13 1.91 6.58 -51.93 -0.34 1.57 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.53 7.88 -51.93 -0.41 0.13 16 39 H 0.09 0.66 4.13 -51.93 -0.21 0.44 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.34 7.84 -51.93 -0.41 -0.07 16 42 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.76 4.91 -51.93 -0.25 0.51 16 45 H 0.07 0.43 7.72 -51.93 -0.40 0.03 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.10 0.81 5.09 -51.93 -0.26 0.55 16 48 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.07 1.09 7.48 -51.93 -0.39 0.70 16 50 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 51 H 0.39 9.65 7.71 -40.82 -0.31 9.33 16 52 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 396.60 15.07 5.98 5.98 Total: -1.00 -32.53 396.60 -9.44 -41.97 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -8.81 Total: 9.06 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: -1.38 Total: 7.32 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -0.38 Total: -60.68 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: 0.18 Total: -20.03 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.53 -9.44 -41.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054702268.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.606 kcal (2) G-P(sol) polarization free energy of solvation -32.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds