Wall clock time and date at job start Tue Mar 31 2020 20:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 110.77449 * 2 1 4 4 C 1.54323 * 110.71811 * 123.23523 * 2 1 3 5 5 N 1.47026 * 107.26547 * 140.55789 * 4 2 1 6 6 C 1.34777 * 125.64655 * 181.01710 * 5 4 2 7 7 O 1.21284 * 119.99995 * 0.02562 * 6 5 4 8 8 C 1.50694 * 120.00134 * 180.02562 * 6 5 4 9 9 N 1.46501 * 109.47675 * 180.02562 * 8 6 5 10 10 C 1.44875 * 112.61549 * 89.99732 * 9 8 6 11 11 C 1.53184 * 111.78801 * 180.20561 * 10 9 8 12 12 C 1.53052 * 109.10328 * 279.36543 * 11 10 9 13 13 C 1.51483 * 111.50487 * 58.25712 * 12 11 10 14 14 C 1.52472 * 107.05428 * 66.74534 * 13 12 11 15 15 C 1.53076 * 110.86306 * 282.13410 * 14 13 12 16 16 C 1.32035 * 112.61361 * 269.77136 * 9 8 6 17 17 O 1.21281 * 118.29375 * 351.57979 * 16 9 8 18 18 C 1.47419 * 108.70433 * 1.06145 * 5 4 2 19 19 C 1.54907 * 104.83402 * 335.86712 * 18 5 4 20 20 H 1.08992 * 111.00631 * 278.90379 * 19 18 5 21 21 N 1.46499 * 111.00532 * 155.08480 * 19 18 5 22 22 C 1.36931 * 120.00122 * 86.45669 * 21 19 18 23 23 H 1.08002 * 120.00098 * 0.02562 * 22 21 19 24 24 C 1.38812 * 120.00429 * 180.02562 * 22 21 19 25 25 N 1.31624 * 119.99535 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00187 * 180.27849 * 24 22 21 27 27 H 1.48501 * 109.46922 * 269.71949 * 26 24 22 28 28 H 1.48496 * 109.47354 * 29.72145 * 26 24 22 29 29 H 1.48501 * 109.47428 * 149.72253 * 26 24 22 30 30 H 1.09009 * 109.47014 * 183.24308 * 1 2 3 31 31 H 1.09001 * 109.47348 * 303.23800 * 1 2 3 32 32 H 1.08991 * 109.47271 * 63.24110 * 1 2 3 33 33 H 1.08993 * 109.88657 * 21.14551 * 4 2 1 34 34 H 1.08999 * 110.01490 * 260.04594 * 4 2 1 35 35 H 1.09005 * 109.47423 * 300.00424 * 8 6 5 36 36 H 1.09001 * 109.47284 * 60.00692 * 8 6 5 37 37 H 1.09001 * 109.01449 * 300.80446 * 10 9 8 38 38 H 1.08995 * 109.01330 * 59.69149 * 10 9 8 39 39 H 1.08996 * 109.53171 * 39.25517 * 11 10 9 40 40 H 1.09000 * 109.52967 * 159.47675 * 11 10 9 41 41 H 1.08996 * 109.06904 * 178.77654 * 12 11 10 42 42 H 1.08995 * 109.07244 * 297.73555 * 12 11 10 43 43 H 1.09000 * 109.93902 * 186.12907 * 13 12 11 44 44 H 1.09000 * 109.94072 * 307.27865 * 13 12 11 45 45 H 1.08998 * 109.19601 * 42.48747 * 14 13 12 46 46 H 1.08994 * 109.20228 * 161.82078 * 14 13 12 47 47 H 1.08998 * 109.62057 * 83.92554 * 15 14 13 48 48 H 1.08998 * 109.61661 * 204.47928 * 15 14 13 49 49 H 1.09000 * 110.36706 * 217.03113 * 18 5 4 50 50 H 1.09000 * 110.46338 * 94.75754 * 18 5 4 51 51 H 0.97001 * 119.99790 * 266.45186 * 21 19 18 52 52 H 0.97005 * 119.99717 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0192 0.0000 4 6 2.0760 -0.7911 1.2073 5 7 3.2445 -1.5506 0.7390 6 6 3.9924 -2.3834 1.4898 7 8 3.7194 -2.5561 2.6588 8 6 5.1679 -3.0999 0.8768 9 7 5.8115 -3.9388 1.8908 10 6 5.2590 -5.2772 1.9390 11 6 5.9416 -6.1360 3.0081 12 6 7.2656 -6.6672 2.4537 13 6 8.1833 -5.5387 2.0308 14 6 8.5844 -4.7901 3.2971 15 6 7.4560 -3.8681 3.7659 16 6 6.7644 -3.3020 2.5463 17 8 7.0988 -2.2049 2.1523 18 6 3.4633 -1.2497 -0.6875 19 6 2.0790 -0.7955 -1.2138 20 1 1.4455 -1.6535 -1.4380 21 7 2.2214 0.0696 -2.3875 22 6 2.3174 -0.4821 -3.6370 23 1 2.2877 -1.5550 -3.7574 24 6 2.4529 0.3375 -4.7492 25 7 2.4887 1.6450 -4.6025 26 14 2.5761 -0.4149 -6.4545 27 1 4.0023 -0.6667 -6.7826 28 1 1.8272 -1.6969 -6.4852 29 1 1.9966 0.5208 -7.4514 30 1 -0.3633 -1.0261 0.0581 31 1 -0.3634 0.5633 0.8595 32 1 -0.3633 0.4627 -0.9175 33 1 1.3130 -1.4758 1.5776 34 1 2.3736 -0.1043 1.9997 35 1 4.8231 -3.7256 0.0535 36 1 5.8841 -2.3685 0.5021 37 1 4.1937 -5.2138 2.1610 38 1 5.3913 -5.7513 0.9665 39 1 6.1341 -5.5304 3.8937 40 1 5.2946 -6.9728 3.2711 41 1 7.7611 -7.2602 3.2223 42 1 7.0615 -7.3024 1.5918 43 1 9.0694 -5.9435 1.5419 44 1 7.6582 -4.8673 1.3513 45 1 8.8086 -5.5107 4.0835 46 1 9.4734 -4.1930 3.0941 47 1 6.7428 -4.4367 4.3626 48 1 7.8712 -3.0558 4.3625 49 1 3.7961 -2.1425 -1.2168 50 1 4.1936 -0.4484 -0.8002 51 1 2.2477 1.0332 -2.2794 52 1 2.5830 2.2178 -5.3797 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054702268.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:43 Heat of formation + Delta-G solvation = -59.018306 kcal Electronic energy + Delta-G solvation = -30831.825065 eV Core-core repulsion = 26831.333721 eV Total energy + Delta-G solvation = -4000.491344 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.33222 -40.87966 -38.93681 -38.15342 -36.26492 -35.84614 -34.00959 -32.78345 -32.52441 -30.68069 -29.15576 -28.72351 -27.05307 -26.47432 -25.81584 -23.20978 -22.98165 -22.02522 -21.32855 -20.41156 -19.70216 -19.09994 -18.55759 -17.78842 -17.68975 -17.30383 -17.07152 -16.45448 -16.27734 -15.90206 -15.53343 -15.29770 -15.08807 -14.84319 -14.56798 -14.51383 -14.38673 -14.25522 -13.87915 -13.63940 -13.58918 -13.28764 -13.08057 -13.05506 -12.90131 -12.85079 -12.81567 -12.44202 -12.29202 -12.20570 -12.16035 -12.00781 -11.71393 -11.68904 -11.67422 -11.40671 -11.20604 -10.93242 -10.87266 -10.74931 -9.78279 -9.73374 -9.04102 -7.92999 -5.23034 1.41865 1.51084 1.51958 1.52599 1.60296 1.82773 2.17323 2.58365 3.33071 3.38989 3.51482 3.71017 3.75620 3.79498 3.83765 3.93066 3.94244 4.02301 4.11143 4.15835 4.21701 4.30378 4.35294 4.42826 4.45535 4.55510 4.56293 4.61440 4.64631 4.71735 4.76643 4.85474 4.87778 4.92279 5.02320 5.04131 5.08553 5.11586 5.16070 5.19686 5.22806 5.24840 5.33258 5.43775 5.44844 5.53494 5.56660 6.27325 6.43010 6.55541 6.98406 7.07928 7.35232 8.06299 8.30485 9.29990 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013641 B = 0.002830 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.152541 B = 9892.814815 C =10985.574958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.104 4.104 3 H 0.074 0.926 4 C 0.121 3.879 5 N -0.611 5.611 6 C 0.514 3.486 7 O -0.576 6.576 8 C 0.064 3.936 9 N -0.574 5.574 10 C 0.118 3.882 11 C -0.146 4.146 12 C -0.114 4.114 13 C -0.140 4.140 14 C -0.109 4.109 15 C -0.139 4.139 16 C 0.526 3.474 17 O -0.603 6.603 18 C 0.083 3.917 19 C 0.174 3.826 20 H 0.070 0.930 21 N -0.721 5.721 22 C -0.240 4.240 23 H 0.083 0.917 24 C -0.071 4.071 25 N -0.968 5.968 26 Si 0.969 3.031 27 H -0.289 1.289 28 H -0.266 1.266 29 H -0.301 1.301 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.133 0.867 36 H 0.107 0.893 37 H 0.064 0.936 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.051 0.949 45 H 0.101 0.899 46 H 0.057 0.943 47 H 0.115 0.885 48 H 0.089 0.911 49 H 0.083 0.917 50 H 0.053 0.947 51 H 0.376 0.624 52 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.501 -19.299 16.917 26.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.124 4.124 3 H 0.093 0.907 4 C -0.002 4.002 5 N -0.345 5.345 6 C 0.303 3.697 7 O -0.456 6.456 8 C -0.064 4.064 9 N -0.303 5.303 10 C -0.002 4.002 11 C -0.183 4.183 12 C -0.151 4.151 13 C -0.177 4.177 14 C -0.147 4.147 15 C -0.178 4.178 16 C 0.317 3.683 17 O -0.485 6.485 18 C -0.043 4.043 19 C 0.064 3.936 20 H 0.087 0.913 21 N -0.360 5.360 22 C -0.371 4.371 23 H 0.101 0.899 24 C -0.263 4.263 25 N -0.618 5.618 26 Si 0.799 3.201 27 H -0.216 1.216 28 H -0.191 1.191 29 H -0.228 1.228 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.151 0.849 36 H 0.124 0.876 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.121 0.879 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.069 0.931 45 H 0.119 0.881 46 H 0.076 0.924 47 H 0.133 0.867 48 H 0.108 0.892 49 H 0.101 0.899 50 H 0.071 0.929 51 H 0.208 0.792 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.602 -19.120 17.306 26.621 hybrid contribution 0.097 0.941 -1.228 1.550 sum 6.699 -18.180 16.079 25.177 Atomic orbital electron populations 1.21614 0.92306 1.02491 1.02084 1.22390 0.97700 0.98957 0.93312 0.90745 1.21974 0.87403 0.94416 0.96436 1.48538 1.30024 1.43751 1.12149 1.21107 0.83743 0.78932 0.85924 1.90624 1.71890 1.65738 1.17364 1.21602 0.93664 0.97744 0.93409 1.46790 1.33841 1.13372 1.36346 1.21578 0.97574 0.79078 1.01999 1.22300 0.97668 1.00118 0.98203 1.21366 0.94682 0.97222 1.01815 1.21581 1.00477 0.98459 0.97209 1.21460 0.96063 0.98138 0.99008 1.22366 0.99624 1.01499 0.94323 1.20453 0.78424 0.84202 0.85200 1.90712 1.65500 1.23582 1.68745 1.23245 1.01203 1.00860 0.78978 1.21494 0.92488 0.93537 0.86113 0.91260 1.42419 1.87017 1.05101 1.01451 1.19620 1.40596 0.92326 0.84589 0.89946 1.25524 1.03548 0.95744 1.01532 1.69817 1.58835 1.03358 1.29792 0.85204 0.77450 0.77469 0.80008 1.21630 1.19082 1.22754 0.91705 0.91007 0.93165 0.90466 0.92310 0.84948 0.87558 0.91753 0.89195 0.89872 0.87934 0.89890 0.91147 0.90482 0.93063 0.88090 0.92371 0.86739 0.89242 0.89885 0.92883 0.79198 0.94100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.42 9.16 71.98 0.66 -2.76 16 2 C -0.10 -3.22 3.17 -9.60 -0.03 -3.25 16 3 H 0.07 2.47 8.00 -2.39 -0.02 2.45 16 4 C 0.12 3.60 6.46 86.73 0.56 4.16 16 5 N -0.61 -19.54 3.33 -811.82 -2.70 -22.24 16 6 C 0.51 16.73 7.82 87.65 0.69 17.41 16 7 O -0.58 -21.49 16.68 -3.04 -0.05 -21.54 16 8 C 0.06 1.72 4.38 85.63 0.38 2.09 16 9 N -0.57 -13.52 1.50 -833.16 -1.25 -14.77 16 10 C 0.12 1.87 5.19 86.74 0.45 2.32 16 11 C -0.15 -1.54 5.63 30.67 0.17 -1.36 16 12 C -0.11 -1.01 5.21 30.11 0.16 -0.85 16 13 C -0.14 -1.90 5.64 29.92 0.17 -1.73 16 14 C -0.11 -1.49 5.61 30.44 0.17 -1.32 16 15 C -0.14 -2.61 5.54 30.03 0.17 -2.44 16 16 C 0.53 14.45 5.23 88.23 0.46 14.91 16 17 O -0.60 -22.34 15.59 -3.03 -0.05 -22.38 16 18 C 0.08 2.79 6.38 86.86 0.55 3.34 16 19 C 0.17 6.30 3.13 46.38 0.15 6.44 16 20 H 0.07 2.48 8.03 -2.39 -0.02 2.46 16 21 N -0.72 -33.57 5.28 -316.39 -1.67 -35.24 16 22 C -0.24 -12.32 9.98 84.03 0.84 -11.48 16 23 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 24 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 25 N -0.97 -57.20 13.06 21.65 0.28 -56.92 16 26 Si 0.97 44.13 29.55 68.60 2.03 46.16 16 27 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 28 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 29 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 30 H 0.06 1.58 8.06 -2.38 -0.02 1.56 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.08 2.14 7.76 -2.39 -0.02 2.12 16 34 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.13 2.73 7.49 -2.38 -0.02 2.71 16 36 H 0.11 3.35 6.58 -2.39 -0.02 3.33 16 37 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.09 1.10 7.88 -2.39 -0.02 1.08 16 39 H 0.08 0.99 4.13 -2.39 -0.01 0.98 16 40 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.08 0.50 7.84 -2.39 -0.02 0.48 16 42 H 0.07 0.55 8.13 -2.39 -0.02 0.53 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.05 0.97 4.91 -2.39 -0.01 0.96 16 45 H 0.10 0.84 7.72 -2.39 -0.02 0.82 16 46 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.11 1.71 5.09 -2.39 -0.01 1.70 16 48 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.08 2.54 7.48 -2.39 -0.02 2.52 16 50 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 51 H 0.38 19.17 7.71 -92.71 -0.71 18.46 16 52 H 0.25 14.48 8.31 -92.70 -0.77 13.71 16 Total: -1.00 -71.84 396.60 2.79 -69.05 By element: Atomic # 1 Polarization: 35.60 SS G_CDS: 0.20 Total: 35.80 kcal Atomic # 6 Polarization: 16.08 SS G_CDS: 6.00 Total: 22.09 kcal Atomic # 7 Polarization: -123.83 SS G_CDS: -5.34 Total: -129.17 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -0.10 Total: -43.92 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -71.84 2.79 -69.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054702268.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.033 kcal (2) G-P(sol) polarization free energy of solvation -71.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds