Wall clock time and date at job start Tue Mar 31 2020 20:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.88836 * 2 1 4 4 C 1.54916 * 111.00118 * 236.12207 * 2 1 3 5 5 N 1.47425 * 104.82708 * 204.91768 * 4 2 1 6 6 C 1.34784 * 125.64360 * 204.09082 * 5 4 2 7 7 O 1.21276 * 119.99742 * 0.02562 * 6 5 4 8 8 C 1.50694 * 119.99840 * 179.97438 * 6 5 4 9 9 N 1.46502 * 109.47047 * 180.02562 * 8 6 5 10 10 C 1.44870 * 112.60882 * 270.02220 * 9 8 6 11 11 C 1.53194 * 111.78680 * 180.19928 * 10 9 8 12 12 C 1.53046 * 109.10280 * 279.36143 * 11 10 9 13 13 C 1.51495 * 111.50292 * 58.24834 * 12 11 10 14 14 C 1.52464 * 107.05391 * 66.75158 * 13 12 11 15 15 C 1.52496 * 110.82039 * 282.06103 * 14 13 12 16 16 C 1.32039 * 112.61043 * 90.00456 * 9 8 6 17 17 O 1.21283 * 118.29058 * 351.60312 * 16 9 8 18 18 C 1.47016 * 108.70852 * 24.35660 * 5 4 2 19 19 C 1.54343 * 107.26293 * 358.58398 * 18 5 4 20 20 H 1.08998 * 110.84985 * 219.67122 * 19 18 5 21 21 N 1.46498 * 110.66566 * 96.52590 * 19 18 5 22 22 C 1.36931 * 120.00481 * 91.40968 * 21 19 18 23 23 H 1.07999 * 119.99772 * 0.02562 * 22 21 19 24 24 C 1.38808 * 120.00370 * 179.97438 * 22 21 19 25 25 N 1.31619 * 120.00320 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99924 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.47148 * 90.00007 * 26 24 22 28 28 H 1.48501 * 109.47168 * 209.99942 * 26 24 22 29 29 H 1.48502 * 109.47029 * 329.99721 * 26 24 22 30 30 H 1.09000 * 109.47310 * 182.42354 * 1 2 3 31 31 H 1.09003 * 109.47059 * 302.42820 * 1 2 3 32 32 H 1.09005 * 109.47326 * 62.42257 * 1 2 3 33 33 H 1.08997 * 110.36622 * 86.08079 * 4 2 1 34 34 H 1.08997 * 110.36510 * 323.75309 * 4 2 1 35 35 H 1.09004 * 109.47030 * 60.00246 * 8 6 5 36 36 H 1.08994 * 109.47854 * 300.00396 * 8 6 5 37 37 H 1.09003 * 109.01836 * 300.79131 * 10 9 8 38 38 H 1.09002 * 109.02020 * 59.68314 * 10 9 8 39 39 H 1.08999 * 109.52700 * 39.25262 * 11 10 9 40 40 H 1.09000 * 109.53001 * 159.47254 * 11 10 9 41 41 H 1.09003 * 109.07426 * 178.76954 * 12 11 10 42 42 H 1.09004 * 109.07636 * 297.79694 * 12 11 10 43 43 H 1.09000 * 109.93450 * 186.13721 * 13 12 11 44 44 H 1.08997 * 109.93420 * 307.27703 * 13 12 11 45 45 H 1.08997 * 109.19893 * 42.48736 * 14 13 12 46 46 H 1.08996 * 109.19705 * 161.77492 * 14 13 12 47 47 H 1.09002 * 109.39342 * 204.49274 * 15 14 13 48 48 H 1.08993 * 109.54152 * 84.13490 * 15 14 13 49 49 H 1.08998 * 109.88089 * 118.12769 * 18 5 4 50 50 H 1.08998 * 109.88051 * 239.29814 * 18 5 4 51 51 H 0.97002 * 119.99741 * 271.40804 * 21 19 18 52 52 H 0.97003 * 120.00028 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8062 -1.2007 5 7 3.4271 -1.2428 -0.7738 6 6 4.4476 -1.5610 -1.5948 7 8 4.3007 -1.4988 -2.7970 8 6 5.7714 -1.9930 -1.0187 9 7 6.7076 -2.2804 -2.1082 10 6 6.6544 -3.6628 -2.5382 11 6 7.6435 -3.9435 -3.6738 12 6 7.0335 -3.4744 -4.9967 13 6 6.6921 -1.9990 -4.9585 14 6 8.0096 -1.2373 -4.8663 15 6 8.5597 -1.2760 -3.4446 16 6 7.4047 -1.2195 -2.4716 17 8 7.0990 -0.1431 -2.0040 18 6 3.4657 -1.2798 0.6953 19 6 2.0861 -0.8084 1.2019 20 1 2.1921 -0.1708 2.0795 21 7 1.2245 -1.9556 1.4981 22 6 1.2042 -2.4893 2.7590 23 1 1.8231 -2.0641 3.5352 24 6 0.3875 -3.5759 3.0397 25 7 0.3676 -4.0885 4.2518 26 14 -0.6836 -4.3108 1.6973 27 1 0.0708 -5.3767 0.9901 28 1 -1.9089 -4.8907 2.3035 29 1 -1.0641 -3.2493 0.7310 30 1 -0.3634 -1.0267 0.0435 31 1 -0.3633 0.5511 0.8674 32 1 -0.3634 0.4758 -0.9109 33 1 2.1559 -0.1712 -2.0838 34 1 1.4518 -1.6698 -1.4031 35 1 5.6297 -2.8895 -0.4149 36 1 6.1741 -1.1950 -0.3950 37 1 6.8928 -4.3074 -1.6921 38 1 5.6455 -3.8888 -2.8835 39 1 8.5727 -3.4043 -3.4893 40 1 7.8458 -5.0134 -3.7248 41 1 7.7465 -3.6543 -5.8014 42 1 6.1251 -4.0443 -5.1921 43 1 6.1623 -1.7164 -5.8683 44 1 6.0745 -1.7829 -4.0868 45 1 8.7333 -1.6895 -5.5446 46 1 7.8453 -0.2002 -5.1584 47 1 9.2139 -0.4186 -3.2862 48 1 9.1194 -2.1993 -3.2952 49 1 3.6600 -2.2969 1.0355 50 1 4.2424 -0.6090 1.0627 51 1 0.6683 -2.3372 0.8009 52 1 -0.2029 -4.8481 4.4479 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054702337.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:49 Heat of formation + Delta-G solvation = -31.612400 kcal Electronic energy + Delta-G solvation = -31460.984937 eV Core-core repulsion = 27461.682003 eV Total energy + Delta-G solvation = -3999.302935 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.35382 -39.60791 -37.64998 -37.24900 -35.34338 -34.07001 -32.49482 -32.00670 -30.89020 -29.76602 -28.18460 -27.66566 -26.20046 -25.37428 -23.62572 -22.35704 -22.09633 -21.14647 -19.46932 -19.18496 -18.76044 -17.96264 -17.35455 -16.74492 -16.58188 -16.18574 -15.76646 -15.25937 -14.94211 -14.64449 -14.37198 -14.29587 -14.01149 -13.76176 -13.34581 -13.24585 -13.01217 -12.82546 -12.75206 -12.73342 -12.35668 -12.21012 -12.15226 -11.96178 -11.77169 -11.60107 -11.48544 -11.43295 -11.05944 -10.96666 -10.84024 -10.80489 -10.53436 -10.34887 -10.18966 -10.07522 -9.87977 -9.77813 -9.63785 -9.09342 -8.73273 -8.32212 -7.41209 -5.87448 -3.24363 2.49391 2.80334 2.87187 3.29180 3.32603 3.37341 3.39147 4.33641 4.40623 4.49338 4.49548 4.62626 4.65130 4.73275 4.90197 5.03249 5.05281 5.07509 5.09002 5.19205 5.26377 5.30091 5.32758 5.41550 5.46595 5.49930 5.53237 5.57430 5.65571 5.69231 5.72158 5.82476 5.83131 5.84981 5.94539 6.01274 6.01657 6.08252 6.15480 6.17655 6.27154 6.37270 6.39731 6.55301 6.63447 6.72359 7.48151 7.80528 7.87803 8.04699 8.31419 8.39714 9.08523 9.80991 9.99881 11.30310 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016591 B = 0.003080 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.263465 B = 9089.746119 C = 9552.385940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.118 4.118 3 H 0.083 0.917 4 C 0.115 3.885 5 N -0.608 5.608 6 C 0.520 3.480 7 O -0.545 6.545 8 C 0.068 3.932 9 N -0.581 5.581 10 C 0.124 3.876 11 C -0.150 4.150 12 C -0.117 4.117 13 C -0.152 4.152 14 C -0.112 4.112 15 C -0.142 4.142 16 C 0.532 3.468 17 O -0.548 6.548 18 C 0.069 3.931 19 C 0.179 3.821 20 H 0.082 0.918 21 N -0.736 5.736 22 C -0.249 4.249 23 H 0.093 0.907 24 C 0.010 3.990 25 N -0.930 5.930 26 Si 0.880 3.120 27 H -0.284 1.284 28 H -0.290 1.290 29 H -0.276 1.276 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.106 0.894 36 H 0.117 0.883 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.105 0.895 45 H 0.070 0.930 46 H 0.064 0.936 47 H 0.094 0.906 48 H 0.094 0.906 49 H 0.079 0.921 50 H 0.061 0.939 51 H 0.363 0.637 52 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.215 2.764 -16.274 22.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.138 4.138 3 H 0.102 0.898 4 C -0.007 4.007 5 N -0.342 5.342 6 C 0.307 3.693 7 O -0.424 6.424 8 C -0.060 4.060 9 N -0.312 5.312 10 C 0.002 3.998 11 C -0.187 4.187 12 C -0.154 4.154 13 C -0.189 4.189 14 C -0.150 4.150 15 C -0.181 4.181 16 C 0.321 3.679 17 O -0.426 6.426 18 C -0.056 4.056 19 C 0.067 3.933 20 H 0.100 0.900 21 N -0.378 5.378 22 C -0.379 4.379 23 H 0.111 0.889 24 C -0.186 4.186 25 N -0.577 5.577 26 Si 0.710 3.290 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.202 1.202 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.124 0.876 36 H 0.135 0.865 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.123 0.877 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.112 0.888 48 H 0.112 0.888 49 H 0.098 0.902 50 H 0.079 0.921 51 H 0.198 0.802 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.153 3.222 -16.536 22.659 hybrid contribution -0.876 -0.858 -0.830 1.481 sum 14.277 2.364 -17.366 22.605 Atomic orbital electron populations 1.21592 0.93625 1.02853 1.01069 1.22681 0.96761 0.98990 0.95370 0.89832 1.22215 0.82955 0.98042 0.97515 1.48453 1.11921 1.65960 1.07865 1.20552 0.84987 0.77247 0.86511 1.90602 1.82924 1.54292 1.14551 1.21601 0.88776 1.04143 0.91435 1.46679 1.37867 1.10005 1.36666 1.21348 1.01114 0.79688 0.97677 1.22300 0.99521 1.02307 0.94527 1.21358 1.00641 0.96746 0.96667 1.21776 0.97395 0.94695 1.05055 1.21319 0.97799 1.01508 0.94373 1.22185 0.96420 1.04540 0.94964 1.19744 0.83569 0.82881 0.81728 1.90748 1.69547 1.26905 1.55388 1.23264 1.01498 1.02437 0.78446 1.21154 0.87832 0.89127 0.95179 0.90002 1.42806 1.49619 1.34896 1.10527 1.19067 1.21697 1.10382 0.86742 0.88918 1.24649 0.99576 0.98371 0.96034 1.69691 1.42702 1.26433 1.18824 0.86651 0.80923 0.79389 0.82051 1.21104 1.21612 1.20236 0.91798 0.91862 0.93414 0.91166 0.91891 0.87624 0.86543 0.91053 0.90704 0.89533 0.90112 0.92148 0.92086 0.91753 0.87656 0.91157 0.91718 0.88751 0.88767 0.90222 0.92063 0.80236 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 8.98 37.16 0.33 -1.65 16 2 C -0.12 -1.77 3.52 -88.47 -0.31 -2.08 16 3 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.12 1.84 6.34 -2.53 -0.02 1.82 16 5 N -0.61 -9.88 3.33 -170.51 -0.57 -10.45 16 6 C 0.52 8.54 7.65 -10.99 -0.08 8.46 16 7 O -0.55 -10.23 14.72 5.56 0.08 -10.15 16 8 C 0.07 0.90 4.46 -5.20 -0.02 0.88 16 9 N -0.58 -6.98 1.68 -176.82 -0.30 -7.28 16 10 C 0.12 1.17 5.20 -4.81 -0.03 1.14 16 11 C -0.15 -1.09 5.63 -26.61 -0.15 -1.24 16 12 C -0.12 -0.98 5.21 -27.47 -0.14 -1.13 16 13 C -0.15 -1.66 5.65 -27.77 -0.16 -1.82 16 14 C -0.11 -1.03 5.60 -27.26 -0.15 -1.18 16 15 C -0.14 -1.33 5.48 -27.93 -0.15 -1.48 16 16 C 0.53 7.03 5.25 -11.98 -0.06 6.97 16 17 O -0.55 -9.41 15.59 5.55 0.09 -9.33 16 18 C 0.07 1.10 6.23 -3.06 -0.02 1.08 16 19 C 0.18 3.10 3.39 -66.09 -0.22 2.88 16 20 H 0.08 1.42 8.09 -51.93 -0.42 1.00 16 21 N -0.74 -15.81 4.26 -51.65 -0.22 -16.03 16 22 C -0.25 -6.48 10.44 -15.06 -0.16 -6.63 16 23 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 24 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 25 N -0.93 -27.90 13.97 55.49 0.78 -27.13 16 26 Si 0.88 21.19 27.74 -169.99 -4.71 16.47 16 27 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H -0.28 -6.22 6.52 56.52 0.37 -5.86 16 30 H 0.06 1.09 6.26 -51.93 -0.33 0.76 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.11 8.04 -51.93 -0.42 0.70 16 34 H 0.06 1.05 8.04 -51.93 -0.42 0.64 16 35 H 0.11 1.19 7.78 -51.93 -0.40 0.78 16 36 H 0.12 1.61 6.89 -51.93 -0.36 1.25 16 37 H 0.07 0.54 8.06 -51.93 -0.42 0.12 16 38 H 0.07 0.83 7.95 -51.93 -0.41 0.41 16 39 H 0.09 0.57 4.14 -51.93 -0.22 0.36 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.42 7.84 -51.93 -0.41 0.01 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.11 1.50 2.89 -51.93 -0.15 1.35 16 45 H 0.07 0.49 7.72 -51.93 -0.40 0.09 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.09 0.66 5.09 -51.93 -0.26 0.40 16 49 H 0.08 1.36 8.04 -51.93 -0.42 0.95 16 50 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 51 H 0.36 7.88 4.10 -40.82 -0.17 7.72 16 52 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 387.10 15.07 5.83 5.83 Total: -1.00 -33.09 387.10 -9.05 -42.14 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -8.59 Total: 9.70 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -1.44 Total: 6.20 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: -0.31 Total: -60.88 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: 0.17 Total: -19.47 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.71 Total: 16.47 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.09 -9.05 -42.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054702337.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.532 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds