Wall clock time and date at job start Tue Mar 31 2020 20:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.88836 * 2 1 4 4 C 1.54916 * 111.00118 * 236.12207 * 2 1 3 5 5 N 1.47425 * 104.82708 * 204.91768 * 4 2 1 6 6 C 1.34784 * 125.64360 * 204.09082 * 5 4 2 7 7 O 1.21276 * 119.99742 * 0.02562 * 6 5 4 8 8 C 1.50694 * 119.99840 * 179.97438 * 6 5 4 9 9 N 1.46502 * 109.47047 * 180.02562 * 8 6 5 10 10 C 1.44870 * 112.60882 * 270.02220 * 9 8 6 11 11 C 1.53194 * 111.78680 * 180.19928 * 10 9 8 12 12 C 1.53046 * 109.10280 * 279.36143 * 11 10 9 13 13 C 1.51495 * 111.50292 * 58.24834 * 12 11 10 14 14 C 1.52464 * 107.05391 * 66.75158 * 13 12 11 15 15 C 1.52496 * 110.82039 * 282.06103 * 14 13 12 16 16 C 1.32039 * 112.61043 * 90.00456 * 9 8 6 17 17 O 1.21283 * 118.29058 * 351.60312 * 16 9 8 18 18 C 1.47016 * 108.70852 * 24.35660 * 5 4 2 19 19 C 1.54343 * 107.26293 * 358.58398 * 18 5 4 20 20 H 1.08998 * 110.84985 * 219.67122 * 19 18 5 21 21 N 1.46498 * 110.66566 * 96.52590 * 19 18 5 22 22 C 1.36931 * 120.00481 * 91.40968 * 21 19 18 23 23 H 1.07999 * 119.99772 * 0.02562 * 22 21 19 24 24 C 1.38808 * 120.00370 * 179.97438 * 22 21 19 25 25 N 1.31619 * 120.00320 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99924 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.47148 * 90.00007 * 26 24 22 28 28 H 1.48501 * 109.47168 * 209.99942 * 26 24 22 29 29 H 1.48502 * 109.47029 * 329.99721 * 26 24 22 30 30 H 1.09000 * 109.47310 * 182.42354 * 1 2 3 31 31 H 1.09003 * 109.47059 * 302.42820 * 1 2 3 32 32 H 1.09005 * 109.47326 * 62.42257 * 1 2 3 33 33 H 1.08997 * 110.36622 * 86.08079 * 4 2 1 34 34 H 1.08997 * 110.36510 * 323.75309 * 4 2 1 35 35 H 1.09004 * 109.47030 * 60.00246 * 8 6 5 36 36 H 1.08994 * 109.47854 * 300.00396 * 8 6 5 37 37 H 1.09003 * 109.01836 * 300.79131 * 10 9 8 38 38 H 1.09002 * 109.02020 * 59.68314 * 10 9 8 39 39 H 1.08999 * 109.52700 * 39.25262 * 11 10 9 40 40 H 1.09000 * 109.53001 * 159.47254 * 11 10 9 41 41 H 1.09003 * 109.07426 * 178.76954 * 12 11 10 42 42 H 1.09004 * 109.07636 * 297.79694 * 12 11 10 43 43 H 1.09000 * 109.93450 * 186.13721 * 13 12 11 44 44 H 1.08997 * 109.93420 * 307.27703 * 13 12 11 45 45 H 1.08997 * 109.19893 * 42.48736 * 14 13 12 46 46 H 1.08996 * 109.19705 * 161.77492 * 14 13 12 47 47 H 1.09002 * 109.39342 * 204.49274 * 15 14 13 48 48 H 1.08993 * 109.54152 * 84.13490 * 15 14 13 49 49 H 1.08998 * 109.88089 * 118.12769 * 18 5 4 50 50 H 1.08998 * 109.88051 * 239.29814 * 18 5 4 51 51 H 0.97002 * 119.99741 * 271.40804 * 21 19 18 52 52 H 0.97003 * 120.00028 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8062 -1.2007 5 7 3.4271 -1.2428 -0.7738 6 6 4.4476 -1.5610 -1.5948 7 8 4.3007 -1.4988 -2.7970 8 6 5.7714 -1.9930 -1.0187 9 7 6.7076 -2.2804 -2.1082 10 6 6.6544 -3.6628 -2.5382 11 6 7.6435 -3.9435 -3.6738 12 6 7.0335 -3.4744 -4.9967 13 6 6.6921 -1.9990 -4.9585 14 6 8.0096 -1.2373 -4.8663 15 6 8.5597 -1.2760 -3.4446 16 6 7.4047 -1.2195 -2.4716 17 8 7.0990 -0.1431 -2.0040 18 6 3.4657 -1.2798 0.6953 19 6 2.0861 -0.8084 1.2019 20 1 2.1921 -0.1708 2.0795 21 7 1.2245 -1.9556 1.4981 22 6 1.2042 -2.4893 2.7590 23 1 1.8231 -2.0641 3.5352 24 6 0.3875 -3.5759 3.0397 25 7 0.3676 -4.0885 4.2518 26 14 -0.6836 -4.3108 1.6973 27 1 0.0708 -5.3767 0.9901 28 1 -1.9089 -4.8907 2.3035 29 1 -1.0641 -3.2493 0.7310 30 1 -0.3634 -1.0267 0.0435 31 1 -0.3633 0.5511 0.8674 32 1 -0.3634 0.4758 -0.9109 33 1 2.1559 -0.1712 -2.0838 34 1 1.4518 -1.6698 -1.4031 35 1 5.6297 -2.8895 -0.4149 36 1 6.1741 -1.1950 -0.3950 37 1 6.8928 -4.3074 -1.6921 38 1 5.6455 -3.8888 -2.8835 39 1 8.5727 -3.4043 -3.4893 40 1 7.8458 -5.0134 -3.7248 41 1 7.7465 -3.6543 -5.8014 42 1 6.1251 -4.0443 -5.1921 43 1 6.1623 -1.7164 -5.8683 44 1 6.0745 -1.7829 -4.0868 45 1 8.7333 -1.6895 -5.5446 46 1 7.8453 -0.2002 -5.1584 47 1 9.2139 -0.4186 -3.2862 48 1 9.1194 -2.1993 -3.2952 49 1 3.6600 -2.2969 1.0355 50 1 4.2424 -0.6090 1.0627 51 1 0.6683 -2.3372 0.8009 52 1 -0.2029 -4.8481 4.4479 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054702337.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:47 Heat of formation + Delta-G solvation = -52.172951 kcal Electronic energy + Delta-G solvation = -31461.876510 eV Core-core repulsion = 27461.682003 eV Total energy + Delta-G solvation = -4000.194507 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.33997 -40.88734 -38.99884 -38.13732 -36.28994 -35.79186 -34.02457 -32.80665 -32.64459 -30.66442 -29.68514 -28.71107 -27.06574 -26.46290 -25.46005 -23.55972 -23.04386 -22.02360 -20.90240 -20.35195 -19.82386 -19.64379 -18.53278 -17.70711 -17.68003 -17.28040 -16.93677 -16.36026 -16.15419 -16.10485 -15.89148 -15.48484 -15.11854 -14.74916 -14.65340 -14.58254 -14.30165 -14.11450 -13.72463 -13.64430 -13.52348 -13.45079 -13.23085 -13.08333 -13.05370 -12.93155 -12.85693 -12.39582 -12.31376 -12.26845 -12.14810 -11.95748 -11.69807 -11.61364 -11.59616 -11.46956 -11.15214 -10.98891 -10.88083 -10.75465 -9.75792 -9.68097 -9.32173 -8.00434 -5.33391 1.37486 1.38398 1.45665 1.47373 1.58642 1.87329 2.20368 2.48111 3.29706 3.37353 3.51972 3.55442 3.72293 3.78117 3.82393 3.84440 3.94673 3.99639 4.05671 4.13889 4.23576 4.30079 4.34706 4.37843 4.57236 4.57321 4.58722 4.60546 4.62611 4.75158 4.78792 4.79478 4.92161 4.93145 4.94069 4.99400 5.02906 5.12964 5.15225 5.20664 5.23203 5.24981 5.28222 5.46147 5.52099 5.55926 5.81499 6.23546 6.50257 6.57832 7.04773 7.08587 7.13229 7.83997 8.02160 9.20603 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016591 B = 0.003080 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.263465 B = 9089.746119 C = 9552.385940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.103 4.103 3 H 0.105 0.895 4 C 0.114 3.886 5 N -0.611 5.611 6 C 0.513 3.487 7 O -0.572 6.572 8 C 0.070 3.930 9 N -0.575 5.575 10 C 0.116 3.884 11 C -0.142 4.142 12 C -0.113 4.113 13 C -0.158 4.158 14 C -0.107 4.107 15 C -0.135 4.135 16 C 0.523 3.477 17 O -0.597 6.597 18 C 0.080 3.920 19 C 0.169 3.831 20 H 0.085 0.915 21 N -0.737 5.737 22 C -0.221 4.221 23 H 0.069 0.931 24 C -0.056 4.056 25 N -0.980 5.980 26 Si 0.938 3.062 27 H -0.285 1.285 28 H -0.299 1.299 29 H -0.253 1.253 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.127 0.873 36 H 0.112 0.888 37 H 0.095 0.905 38 H 0.054 0.946 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.083 0.917 42 H 0.049 0.951 43 H 0.052 0.948 44 H 0.073 0.927 45 H 0.102 0.898 46 H 0.049 0.951 47 H 0.099 0.901 48 H 0.126 0.874 49 H 0.067 0.933 50 H 0.083 0.917 51 H 0.364 0.636 52 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.921 2.525 -18.248 25.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.123 4.123 3 H 0.123 0.877 4 C -0.009 4.009 5 N -0.345 5.345 6 C 0.301 3.699 7 O -0.452 6.452 8 C -0.058 4.058 9 N -0.305 5.305 10 C -0.005 4.005 11 C -0.178 4.178 12 C -0.151 4.151 13 C -0.195 4.195 14 C -0.145 4.145 15 C -0.174 4.174 16 C 0.314 3.686 17 O -0.479 6.479 18 C -0.045 4.045 19 C 0.059 3.941 20 H 0.103 0.897 21 N -0.380 5.380 22 C -0.352 4.352 23 H 0.087 0.913 24 C -0.247 4.247 25 N -0.631 5.631 26 Si 0.767 3.233 27 H -0.212 1.212 28 H -0.226 1.226 29 H -0.177 1.177 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.145 0.855 36 H 0.129 0.871 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.117 0.883 40 H 0.125 0.875 41 H 0.102 0.898 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.121 0.879 46 H 0.068 0.932 47 H 0.117 0.883 48 H 0.144 0.856 49 H 0.086 0.914 50 H 0.101 0.899 51 H 0.199 0.801 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.882 3.001 -18.561 25.269 hybrid contribution -1.376 -0.690 -0.241 1.558 sum 15.507 2.310 -18.802 24.480 Atomic orbital electron populations 1.21565 0.93203 1.01698 1.02402 1.22630 0.97019 0.99413 0.93269 0.87686 1.22226 0.82854 0.97831 0.97947 1.48556 1.12115 1.65904 1.07912 1.21163 0.85861 0.76596 0.86247 1.90595 1.83524 1.55364 1.15729 1.21612 0.87419 1.04770 0.92019 1.46850 1.36813 1.10861 1.35934 1.21577 1.00921 0.78436 0.99562 1.22313 0.98896 1.04057 0.92567 1.21339 1.00891 0.94555 0.98303 1.21751 0.97800 0.97048 1.02949 1.21313 0.97602 1.00708 0.94890 1.22240 0.95072 1.06464 0.93657 1.20491 0.84262 0.82271 0.81575 1.90716 1.71131 1.28743 1.57319 1.23049 1.00966 1.02192 0.78317 1.21381 0.88043 0.88167 0.96491 0.89739 1.42772 1.50452 1.35903 1.08859 1.19046 1.19345 1.09073 0.87742 0.91326 1.25311 1.01845 0.99633 0.97955 1.69849 1.44522 1.27557 1.21149 0.85679 0.78781 0.78997 0.79860 1.21159 1.22579 1.17740 0.93949 0.91797 0.90992 0.91121 0.92815 0.85536 0.87058 0.88733 0.92767 0.88301 0.87488 0.89843 0.93252 0.92968 0.90902 0.87947 0.93196 0.88263 0.85638 0.91425 0.89917 0.80129 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.62 8.98 71.98 0.65 -2.97 16 2 C -0.10 -2.91 3.52 -9.40 -0.03 -2.95 16 3 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 4 C 0.11 3.51 6.34 86.86 0.55 4.06 16 5 N -0.61 -19.39 3.33 -811.77 -2.70 -22.09 16 6 C 0.51 16.75 7.65 87.65 0.67 17.42 16 7 O -0.57 -21.73 14.72 -3.02 -0.04 -21.77 16 8 C 0.07 1.81 4.46 85.63 0.38 2.19 16 9 N -0.57 -13.17 1.68 -833.22 -1.40 -14.57 16 10 C 0.12 1.96 5.20 86.75 0.45 2.41 16 11 C -0.14 -1.57 5.63 30.67 0.17 -1.40 16 12 C -0.11 -1.64 5.21 30.12 0.16 -1.49 16 13 C -0.16 -3.31 5.65 29.92 0.17 -3.15 16 14 C -0.11 -1.76 5.60 30.25 0.17 -1.59 16 15 C -0.14 -2.23 5.48 29.82 0.16 -2.07 16 16 C 0.52 13.38 5.25 88.21 0.46 13.85 16 17 O -0.60 -20.68 15.59 -3.04 -0.05 -20.72 16 18 C 0.08 2.46 6.23 86.74 0.54 3.00 16 19 C 0.17 5.66 3.39 46.19 0.16 5.82 16 20 H 0.08 2.82 8.09 -2.39 -0.02 2.81 16 21 N -0.74 -31.07 4.26 -317.32 -1.35 -32.42 16 22 C -0.22 -11.54 10.44 84.03 0.88 -10.66 16 23 H 0.07 3.87 8.06 -2.91 -0.02 3.85 16 24 C -0.06 -3.11 5.50 84.86 0.47 -2.65 16 25 N -0.98 -60.30 13.97 21.65 0.30 -59.99 16 26 Si 0.94 43.94 27.74 68.60 1.90 45.84 16 27 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 28 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 29 H -0.25 -10.69 6.52 99.48 0.65 -10.04 16 30 H 0.04 1.36 6.26 -2.39 -0.01 1.34 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.07 2.17 8.04 -2.39 -0.02 2.16 16 34 H 0.05 1.75 8.04 -2.39 -0.02 1.73 16 35 H 0.13 2.68 7.78 -2.38 -0.02 2.66 16 36 H 0.11 3.04 6.89 -2.39 -0.02 3.02 16 37 H 0.09 1.17 8.06 -2.39 -0.02 1.15 16 38 H 0.05 1.16 7.95 -2.39 -0.02 1.14 16 39 H 0.10 0.86 4.14 -2.39 -0.01 0.85 16 40 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.08 0.85 7.84 -2.39 -0.02 0.83 16 42 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 43 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.07 2.07 2.89 -2.39 -0.01 2.06 16 45 H 0.10 1.04 7.72 -2.39 -0.02 1.02 16 46 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 48 H 0.13 1.24 5.09 -2.39 -0.01 1.23 16 49 H 0.07 2.26 8.04 -2.39 -0.02 2.24 16 50 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 51 H 0.36 15.35 4.10 -92.71 -0.38 14.97 16 52 H 0.26 15.19 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -74.60 387.10 3.14 -71.46 By element: Atomic # 1 Polarization: 33.95 SS G_CDS: 0.48 Total: 34.43 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: 6.00 Total: 19.83 kcal Atomic # 7 Polarization: -123.92 SS G_CDS: -5.15 Total: -129.07 kcal Atomic # 8 Polarization: -42.40 SS G_CDS: -0.09 Total: -42.50 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.90 Total: 45.84 kcal Total: -74.60 3.14 -71.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054702337.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.287 kcal (2) G-P(sol) polarization free energy of solvation -74.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds