Wall clock time and date at job start Tue Mar 31 2020 20:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.88735 * 2 1 4 4 C 1.54916 * 111.00340 * 236.11673 * 2 1 3 5 5 N 1.47418 * 104.83180 * 204.87867 * 4 2 1 6 6 C 1.34777 * 125.64671 * 204.09050 * 5 4 2 7 7 O 1.21278 * 120.00264 * 0.02562 * 6 5 4 8 8 C 1.50707 * 119.99988 * 180.02562 * 6 5 4 9 9 N 1.46500 * 109.47052 * 179.97438 * 8 6 5 10 10 C 1.44871 * 112.61249 * 90.00383 * 9 8 6 11 11 C 1.53187 * 111.72854 * 180.16419 * 10 9 8 12 12 C 1.53053 * 109.10106 * 279.40136 * 11 10 9 13 13 C 1.51485 * 111.50603 * 58.25224 * 12 11 10 14 14 C 1.52467 * 107.04605 * 66.74664 * 13 12 11 15 15 C 1.53068 * 110.86736 * 282.12480 * 14 13 12 16 16 C 1.31925 * 112.50998 * 270.03191 * 9 8 6 17 17 O 1.21291 * 118.33601 * 351.59246 * 16 9 8 18 18 C 1.47022 * 108.70675 * 24.35974 * 5 4 2 19 19 C 1.54346 * 107.26113 * 358.58290 * 18 5 4 20 20 H 1.08999 * 110.66442 * 96.52917 * 19 18 5 21 21 N 1.46498 * 110.84590 * 219.67400 * 19 18 5 22 22 C 1.36936 * 120.00168 * 268.69041 * 21 19 18 23 23 H 1.08003 * 120.00118 * 0.02562 * 22 21 19 24 24 C 1.38814 * 120.00197 * 180.02562 * 22 21 19 25 25 N 1.31617 * 120.00207 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99979 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47131 * 59.99918 * 26 24 22 28 28 H 1.48497 * 109.46907 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.46745 * 299.99888 * 26 24 22 30 30 H 1.08994 * 109.47577 * 182.42486 * 1 2 3 31 31 H 1.08999 * 109.46821 * 302.42866 * 1 2 3 32 32 H 1.09001 * 109.46947 * 62.42380 * 1 2 3 33 33 H 1.08998 * 110.36256 * 86.04044 * 4 2 1 34 34 H 1.08998 * 110.45889 * 323.76538 * 4 2 1 35 35 H 1.09004 * 109.47005 * 60.00030 * 8 6 5 36 36 H 1.09001 * 109.46934 * 300.00475 * 8 6 5 37 37 H 1.09002 * 109.01935 * 59.60592 * 10 9 8 38 38 H 1.08996 * 109.01580 * 300.71909 * 10 9 8 39 39 H 1.09003 * 109.53039 * 39.28519 * 11 10 9 40 40 H 1.08998 * 109.53147 * 159.51534 * 11 10 9 41 41 H 1.09002 * 109.07243 * 178.77736 * 12 11 10 42 42 H 1.09002 * 109.07026 * 297.73135 * 12 11 10 43 43 H 1.09001 * 109.93810 * 186.12652 * 13 12 11 44 44 H 1.09002 * 109.93885 * 307.28007 * 13 12 11 45 45 H 1.08998 * 109.20103 * 42.48801 * 14 13 12 46 46 H 1.09004 * 109.19732 * 161.81996 * 14 13 12 47 47 H 1.09005 * 109.61387 * 83.93208 * 15 14 13 48 48 H 1.08992 * 109.62493 * 204.48643 * 15 14 13 49 49 H 1.08999 * 109.88356 * 118.12595 * 18 5 4 50 50 H 1.09002 * 109.88094 * 239.29730 * 18 5 4 51 51 H 0.97003 * 120.00087 * 88.69257 * 21 19 18 52 52 H 0.96991 * 120.00463 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8063 -1.2006 5 7 3.4274 -1.2421 -0.7742 6 6 4.4478 -1.5600 -1.5953 7 8 4.3006 -1.4983 -2.7975 8 6 5.7717 -1.9923 -1.0195 9 7 6.7074 -2.2805 -2.1093 10 6 7.4725 -1.1170 -2.5088 11 6 8.4407 -1.4398 -3.6512 12 6 9.6917 -2.1067 -3.0742 13 6 9.3466 -3.3704 -2.3135 14 6 8.8254 -4.3774 -3.3328 15 6 7.3783 -4.0624 -3.7196 16 6 6.6566 -3.5399 -2.4989 17 8 5.9975 -4.3191 -1.8434 18 6 3.4666 -1.2786 0.6951 19 6 2.0869 -0.8078 1.2019 20 1 1.4464 -1.6617 1.4228 21 7 2.2294 0.0496 2.3812 22 6 2.2014 -0.5004 3.6350 23 1 2.0747 -1.5663 3.7545 24 6 2.3360 0.3121 4.7524 25 7 2.4900 1.6111 4.6070 26 14 2.2985 -0.4383 6.4628 27 1 3.4051 -1.4194 6.5972 28 1 2.4609 0.6339 7.4773 29 1 0.9991 -1.1256 6.6733 30 1 -0.3634 -1.0267 0.0435 31 1 -0.3633 0.5511 0.8674 32 1 -0.3633 0.4757 -0.9109 33 1 2.1553 -0.1715 -2.0839 34 1 1.4528 -1.6703 -1.4045 35 1 5.6301 -2.8889 -0.4160 36 1 6.1745 -1.1944 -0.3956 37 1 8.0416 -0.7548 -1.6526 38 1 6.7863 -0.3355 -2.8350 39 1 7.9592 -2.1171 -4.3566 40 1 8.7215 -0.5189 -4.1622 41 1 10.3707 -2.3559 -3.8896 42 1 10.1880 -1.4091 -2.3995 43 1 10.2372 -3.7644 -1.8238 44 1 8.5770 -3.1589 -1.5710 45 1 9.4509 -4.3411 -4.2247 46 1 8.8711 -5.3783 -2.9035 47 1 7.3657 -3.3056 -4.5040 48 1 6.8885 -4.9691 -4.0742 49 1 3.6616 -2.2956 1.0355 50 1 4.2431 -0.6073 1.0620 51 1 2.3436 1.0068 2.2740 52 1 2.5844 2.1788 5.3877 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054702351.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:58 Heat of formation + Delta-G solvation = -39.332312 kcal Electronic energy + Delta-G solvation = -30832.118969 eV Core-core repulsion = 26832.481274 eV Total energy + Delta-G solvation = -3999.637695 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.33293 -39.56100 -37.56690 -37.26877 -35.31062 -34.07508 -32.54628 -32.01830 -30.75023 -29.82553 -27.78313 -27.45544 -26.23021 -25.37237 -23.94412 -22.40055 -21.70779 -21.11983 -19.96307 -19.15990 -18.84876 -17.40765 -17.18532 -16.81523 -16.52763 -16.29968 -15.77351 -15.44244 -14.78507 -14.72507 -14.35285 -14.12500 -13.85653 -13.56187 -13.47966 -13.25879 -13.01469 -12.94477 -12.83206 -12.63964 -12.47613 -12.28814 -12.09462 -11.93076 -11.65426 -11.56113 -11.52412 -11.15495 -11.09646 -11.04317 -11.00341 -10.74182 -10.61888 -10.29219 -10.25300 -10.04182 -9.91487 -9.73842 -9.73102 -9.03196 -8.73506 -8.31852 -7.12075 -5.87301 -3.18169 2.52312 2.80923 2.83499 3.38246 3.39953 3.44267 3.44951 4.31598 4.37243 4.43331 4.49882 4.56480 4.67522 4.69525 4.87797 4.93187 5.08072 5.11760 5.15811 5.19758 5.23776 5.31245 5.33338 5.45485 5.50429 5.55607 5.57895 5.63253 5.64290 5.66064 5.75699 5.77676 5.82354 5.82894 5.90187 5.91324 5.99988 6.01945 6.12438 6.20292 6.24707 6.38765 6.47203 6.56434 6.62006 6.85380 7.50413 7.61345 7.79714 8.06214 8.29831 8.37080 9.42223 9.95571 10.30726 11.34494 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013855 B = 0.002804 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.431440 B = 9984.581782 C =11003.936094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.114 4.114 3 H 0.083 0.917 4 C 0.115 3.885 5 N -0.610 5.610 6 C 0.517 3.483 7 O -0.552 6.552 8 C 0.061 3.939 9 N -0.579 5.579 10 C 0.126 3.874 11 C -0.151 4.151 12 C -0.119 4.119 13 C -0.138 4.138 14 C -0.113 4.113 15 C -0.143 4.143 16 C 0.536 3.464 17 O -0.552 6.552 18 C 0.070 3.930 19 C 0.178 3.822 20 H 0.069 0.931 21 N -0.710 5.710 22 C -0.249 4.249 23 H 0.072 0.928 24 C -0.007 4.007 25 N -0.930 5.930 26 Si 0.908 3.092 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.285 1.285 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.125 0.875 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.096 0.904 48 H 0.095 0.905 49 H 0.061 0.939 50 H 0.073 0.927 51 H 0.387 0.613 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.117 -5.835 -17.424 22.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.134 4.134 3 H 0.101 0.899 4 C -0.008 4.008 5 N -0.344 5.344 6 C 0.305 3.695 7 O -0.430 6.430 8 C -0.066 4.066 9 N -0.311 5.311 10 C 0.004 3.996 11 C -0.188 4.188 12 C -0.157 4.157 13 C -0.175 4.175 14 C -0.151 4.151 15 C -0.182 4.182 16 C 0.326 3.674 17 O -0.431 6.431 18 C -0.056 4.056 19 C 0.065 3.935 20 H 0.087 0.913 21 N -0.350 5.350 22 C -0.380 4.380 23 H 0.090 0.910 24 C -0.204 4.204 25 N -0.577 5.577 26 Si 0.738 3.262 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.211 1.211 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.142 0.858 36 H 0.123 0.877 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.085 0.915 47 H 0.114 0.886 48 H 0.113 0.887 49 H 0.080 0.920 50 H 0.092 0.908 51 H 0.221 0.779 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 11.845 -6.323 -17.658 22.183 hybrid contribution 0.100 0.100 1.033 1.042 sum 11.945 -6.224 -16.626 21.397 Atomic orbital electron populations 1.21593 0.93873 1.01842 1.01705 1.22647 0.96349 0.99716 0.94690 0.89907 1.22238 0.82832 0.98051 0.97697 1.48509 1.11963 1.65791 1.08151 1.20624 0.85382 0.77090 0.86453 1.90641 1.83348 1.54417 1.14643 1.21632 0.88542 1.04669 0.91748 1.46579 1.38589 1.09167 1.36722 1.21308 0.93799 0.86256 0.98214 1.22300 0.95964 1.02364 0.98168 1.21402 0.97253 0.97143 0.99877 1.21580 1.02032 0.95570 0.98367 1.21436 0.94010 0.99904 0.99762 1.22290 0.96700 1.03027 0.96220 1.19662 0.80595 0.80810 0.86363 1.90733 1.43452 1.53838 1.55050 1.23388 1.03457 1.01392 0.77409 1.21246 0.91554 0.93816 0.86866 0.91311 1.42348 1.86342 1.06195 1.00114 1.19218 1.42960 0.92591 0.83205 0.90983 1.24755 1.02262 0.95419 0.97962 1.69643 1.55967 1.02835 1.29292 0.86270 0.77960 0.77836 0.84119 1.21117 1.21679 1.21146 0.92796 0.91404 0.93253 0.91134 0.91771 0.85759 0.87663 0.90946 0.90957 0.89315 0.90040 0.91731 0.91929 0.91231 0.90540 0.90870 0.91474 0.88578 0.88668 0.92016 0.90833 0.77894 0.93295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 9.30 37.16 0.35 -1.54 16 2 C -0.11 -1.80 3.27 -88.47 -0.29 -2.09 16 3 H 0.08 1.37 8.01 -51.93 -0.42 0.95 16 4 C 0.11 1.77 6.37 -2.53 -0.02 1.75 16 5 N -0.61 -9.99 3.33 -170.51 -0.57 -10.56 16 6 C 0.52 8.61 7.82 -10.98 -0.09 8.52 16 7 O -0.55 -10.50 16.60 5.56 0.09 -10.40 16 8 C 0.06 0.85 4.56 -5.19 -0.02 0.83 16 9 N -0.58 -7.15 1.49 -176.84 -0.26 -7.41 16 10 C 0.13 1.18 5.19 -4.82 -0.03 1.15 16 11 C -0.15 -1.07 5.63 -26.61 -0.15 -1.22 16 12 C -0.12 -0.76 5.21 -27.47 -0.14 -0.91 16 13 C -0.14 -1.09 5.65 -27.77 -0.16 -1.25 16 14 C -0.11 -0.88 5.61 -26.97 -0.15 -1.03 16 15 C -0.14 -1.41 5.52 -27.64 -0.15 -1.56 16 16 C 0.54 7.34 5.24 -12.03 -0.06 7.27 16 17 O -0.55 -9.71 15.58 5.55 0.09 -9.62 16 18 C 0.07 1.18 6.25 -3.05 -0.02 1.16 16 19 C 0.18 3.28 3.08 -66.09 -0.20 3.07 16 20 H 0.07 1.30 7.96 -51.93 -0.41 0.89 16 21 N -0.71 -16.38 5.15 -51.64 -0.27 -16.64 16 22 C -0.25 -6.46 9.96 -15.06 -0.15 -6.61 16 23 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 24 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 25 N -0.93 -26.71 13.06 55.49 0.72 -25.99 16 26 Si 0.91 21.48 29.55 -169.99 -5.02 16.46 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 28 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 29 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 30 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.08 8.04 -51.93 -0.42 0.66 16 34 H 0.06 0.96 8.04 -51.93 -0.42 0.54 16 35 H 0.12 1.89 6.58 -51.93 -0.34 1.54 16 36 H 0.11 1.24 7.79 -51.93 -0.40 0.83 16 37 H 0.07 0.58 7.88 -51.93 -0.41 0.17 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 0.67 4.13 -51.93 -0.21 0.46 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.35 7.84 -51.93 -0.41 -0.06 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.77 4.91 -51.93 -0.26 0.52 16 45 H 0.07 0.43 7.72 -51.93 -0.40 0.03 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.10 0.82 5.09 -51.93 -0.26 0.55 16 48 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.07 1.30 8.03 -51.93 -0.42 0.89 16 51 H 0.39 9.55 7.76 -40.82 -0.32 9.24 16 52 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 LS Contribution 397.53 15.07 5.99 5.99 Total: -1.00 -32.25 397.53 -9.47 -41.73 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -8.87 Total: 9.18 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: -1.38 Total: 7.27 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: -0.37 Total: -60.60 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: 0.18 Total: -20.03 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.25 -9.47 -41.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054702351.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.393 kcal (2) G-P(sol) polarization free energy of solvation -32.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds