Wall clock time and date at job start Tue Mar 31 2020 20:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.88735 * 2 1 4 4 C 1.54916 * 111.00340 * 236.11673 * 2 1 3 5 5 N 1.47418 * 104.83180 * 204.87867 * 4 2 1 6 6 C 1.34777 * 125.64671 * 204.09050 * 5 4 2 7 7 O 1.21278 * 120.00264 * 0.02562 * 6 5 4 8 8 C 1.50707 * 119.99988 * 180.02562 * 6 5 4 9 9 N 1.46500 * 109.47052 * 179.97438 * 8 6 5 10 10 C 1.44871 * 112.61249 * 90.00383 * 9 8 6 11 11 C 1.53187 * 111.72854 * 180.16419 * 10 9 8 12 12 C 1.53053 * 109.10106 * 279.40136 * 11 10 9 13 13 C 1.51485 * 111.50603 * 58.25224 * 12 11 10 14 14 C 1.52467 * 107.04605 * 66.74664 * 13 12 11 15 15 C 1.53068 * 110.86736 * 282.12480 * 14 13 12 16 16 C 1.31925 * 112.50998 * 270.03191 * 9 8 6 17 17 O 1.21291 * 118.33601 * 351.59246 * 16 9 8 18 18 C 1.47022 * 108.70675 * 24.35974 * 5 4 2 19 19 C 1.54346 * 107.26113 * 358.58290 * 18 5 4 20 20 H 1.08999 * 110.66442 * 96.52917 * 19 18 5 21 21 N 1.46498 * 110.84590 * 219.67400 * 19 18 5 22 22 C 1.36936 * 120.00168 * 268.69041 * 21 19 18 23 23 H 1.08003 * 120.00118 * 0.02562 * 22 21 19 24 24 C 1.38814 * 120.00197 * 180.02562 * 22 21 19 25 25 N 1.31617 * 120.00207 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99979 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47131 * 59.99918 * 26 24 22 28 28 H 1.48497 * 109.46907 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.46745 * 299.99888 * 26 24 22 30 30 H 1.08994 * 109.47577 * 182.42486 * 1 2 3 31 31 H 1.08999 * 109.46821 * 302.42866 * 1 2 3 32 32 H 1.09001 * 109.46947 * 62.42380 * 1 2 3 33 33 H 1.08998 * 110.36256 * 86.04044 * 4 2 1 34 34 H 1.08998 * 110.45889 * 323.76538 * 4 2 1 35 35 H 1.09004 * 109.47005 * 60.00030 * 8 6 5 36 36 H 1.09001 * 109.46934 * 300.00475 * 8 6 5 37 37 H 1.09002 * 109.01935 * 59.60592 * 10 9 8 38 38 H 1.08996 * 109.01580 * 300.71909 * 10 9 8 39 39 H 1.09003 * 109.53039 * 39.28519 * 11 10 9 40 40 H 1.08998 * 109.53147 * 159.51534 * 11 10 9 41 41 H 1.09002 * 109.07243 * 178.77736 * 12 11 10 42 42 H 1.09002 * 109.07026 * 297.73135 * 12 11 10 43 43 H 1.09001 * 109.93810 * 186.12652 * 13 12 11 44 44 H 1.09002 * 109.93885 * 307.28007 * 13 12 11 45 45 H 1.08998 * 109.20103 * 42.48801 * 14 13 12 46 46 H 1.09004 * 109.19732 * 161.81996 * 14 13 12 47 47 H 1.09005 * 109.61387 * 83.93208 * 15 14 13 48 48 H 1.08992 * 109.62493 * 204.48643 * 15 14 13 49 49 H 1.08999 * 109.88356 * 118.12595 * 18 5 4 50 50 H 1.09002 * 109.88094 * 239.29730 * 18 5 4 51 51 H 0.97003 * 120.00087 * 88.69257 * 21 19 18 52 52 H 0.96991 * 120.00463 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8063 -1.2006 5 7 3.4274 -1.2421 -0.7742 6 6 4.4478 -1.5600 -1.5953 7 8 4.3006 -1.4983 -2.7975 8 6 5.7717 -1.9923 -1.0195 9 7 6.7074 -2.2805 -2.1093 10 6 7.4725 -1.1170 -2.5088 11 6 8.4407 -1.4398 -3.6512 12 6 9.6917 -2.1067 -3.0742 13 6 9.3466 -3.3704 -2.3135 14 6 8.8254 -4.3774 -3.3328 15 6 7.3783 -4.0624 -3.7196 16 6 6.6566 -3.5399 -2.4989 17 8 5.9975 -4.3191 -1.8434 18 6 3.4666 -1.2786 0.6951 19 6 2.0869 -0.8078 1.2019 20 1 1.4464 -1.6617 1.4228 21 7 2.2294 0.0496 2.3812 22 6 2.2014 -0.5004 3.6350 23 1 2.0747 -1.5663 3.7545 24 6 2.3360 0.3121 4.7524 25 7 2.4900 1.6111 4.6070 26 14 2.2985 -0.4383 6.4628 27 1 3.4051 -1.4194 6.5972 28 1 2.4609 0.6339 7.4773 29 1 0.9991 -1.1256 6.6733 30 1 -0.3634 -1.0267 0.0435 31 1 -0.3633 0.5511 0.8674 32 1 -0.3633 0.4757 -0.9109 33 1 2.1553 -0.1715 -2.0839 34 1 1.4528 -1.6703 -1.4045 35 1 5.6301 -2.8889 -0.4160 36 1 6.1745 -1.1944 -0.3956 37 1 8.0416 -0.7548 -1.6526 38 1 6.7863 -0.3355 -2.8350 39 1 7.9592 -2.1171 -4.3566 40 1 8.7215 -0.5189 -4.1622 41 1 10.3707 -2.3559 -3.8896 42 1 10.1880 -1.4091 -2.3995 43 1 10.2372 -3.7644 -1.8238 44 1 8.5770 -3.1589 -1.5710 45 1 9.4509 -4.3411 -4.2247 46 1 8.8711 -5.3783 -2.9035 47 1 7.3657 -3.3056 -4.5040 48 1 6.8885 -4.9691 -4.0742 49 1 3.6616 -2.2956 1.0355 50 1 4.2431 -0.6073 1.0620 51 1 2.3436 1.0068 2.2740 52 1 2.5844 2.1788 5.3877 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054702351.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:57 Heat of formation + Delta-G solvation = -58.472511 kcal Electronic energy + Delta-G solvation = -30832.948950 eV Core-core repulsion = 26832.481274 eV Total energy + Delta-G solvation = -4000.467676 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.34434 -40.87177 -38.93291 -38.15419 -36.26881 -35.84476 -33.99895 -32.78689 -32.51697 -30.68943 -29.17023 -28.71627 -27.06691 -26.47940 -25.79320 -23.21710 -22.98635 -21.98653 -21.40242 -20.37876 -19.70507 -19.10528 -18.56671 -17.87072 -17.55386 -17.35209 -17.04536 -16.52471 -16.26031 -15.90305 -15.57877 -15.33886 -15.11241 -14.83171 -14.65950 -14.57865 -14.22884 -14.03158 -13.88549 -13.64307 -13.53025 -13.43824 -13.09348 -13.00894 -12.87703 -12.84117 -12.80597 -12.44514 -12.29502 -12.25351 -12.17225 -12.04456 -11.70330 -11.69646 -11.68088 -11.47047 -11.19060 -10.92291 -10.87635 -10.74552 -9.79495 -9.70266 -9.05595 -7.93600 -5.23269 1.43064 1.50971 1.51384 1.52356 1.58262 1.82392 2.17962 2.57691 3.33983 3.38343 3.51044 3.70367 3.77950 3.79991 3.82973 3.88105 3.94052 4.01916 4.11040 4.20607 4.20959 4.29635 4.33511 4.41498 4.45463 4.54891 4.60064 4.60666 4.64162 4.71276 4.76020 4.86068 4.89178 4.92180 5.01750 5.03868 5.09061 5.11105 5.15787 5.20862 5.23095 5.24397 5.31193 5.43247 5.46927 5.52488 5.55766 6.26864 6.43243 6.55362 6.98029 7.07503 7.35224 8.05688 8.30700 9.28836 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013855 B = 0.002804 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.431440 B = 9984.581782 C =11003.936094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 H 0.075 0.925 4 C 0.117 3.883 5 N -0.611 5.611 6 C 0.515 3.485 7 O -0.576 6.576 8 C 0.063 3.937 9 N -0.573 5.573 10 C 0.119 3.881 11 C -0.146 4.146 12 C -0.114 4.114 13 C -0.140 4.140 14 C -0.108 4.108 15 C -0.139 4.139 16 C 0.527 3.473 17 O -0.602 6.602 18 C 0.083 3.917 19 C 0.172 3.828 20 H 0.068 0.932 21 N -0.719 5.719 22 C -0.243 4.243 23 H 0.078 0.922 24 C -0.066 4.066 25 N -0.965 5.965 26 Si 0.967 3.033 27 H -0.278 1.278 28 H -0.298 1.298 29 H -0.280 1.280 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.110 0.890 36 H 0.126 0.874 37 H 0.087 0.913 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.050 0.950 45 H 0.101 0.899 46 H 0.059 0.941 47 H 0.114 0.886 48 H 0.091 0.909 49 H 0.064 0.936 50 H 0.066 0.934 51 H 0.377 0.623 52 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.381 -6.258 -18.856 23.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.122 4.122 3 H 0.094 0.906 4 C -0.005 4.005 5 N -0.345 5.345 6 C 0.303 3.697 7 O -0.457 6.457 8 C -0.064 4.064 9 N -0.303 5.303 10 C -0.002 4.002 11 C -0.182 4.182 12 C -0.151 4.151 13 C -0.177 4.177 14 C -0.146 4.146 15 C -0.178 4.178 16 C 0.318 3.682 17 O -0.484 6.484 18 C -0.043 4.043 19 C 0.061 3.939 20 H 0.086 0.914 21 N -0.357 5.357 22 C -0.375 4.375 23 H 0.096 0.904 24 C -0.259 4.259 25 N -0.615 5.615 26 Si 0.796 3.204 27 H -0.205 1.205 28 H -0.225 1.225 29 H -0.206 1.206 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.128 0.872 36 H 0.144 0.856 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.103 0.897 40 H 0.120 0.880 41 H 0.102 0.898 42 H 0.087 0.913 43 H 0.096 0.904 44 H 0.069 0.931 45 H 0.119 0.881 46 H 0.078 0.922 47 H 0.131 0.869 48 H 0.109 0.891 49 H 0.082 0.918 50 H 0.085 0.915 51 H 0.209 0.791 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 13.121 -6.762 -19.132 24.164 hybrid contribution -0.314 0.214 1.400 1.451 sum 12.807 -6.548 -17.732 22.832 Atomic orbital electron populations 1.21556 0.92431 1.02408 1.02103 1.22536 0.97461 0.98851 0.93335 0.90645 1.22276 0.82446 0.98350 0.97462 1.48548 1.12482 1.65693 1.07749 1.21074 0.86052 0.76414 0.86140 1.90619 1.83854 1.55563 1.15619 1.21591 0.87939 1.04500 0.92411 1.46762 1.37999 1.09588 1.35911 1.21559 0.93943 0.84810 0.99908 1.22301 0.95520 1.03321 0.97088 1.21371 0.97093 0.96282 1.00378 1.21579 1.01510 0.96603 0.98041 1.21453 0.92845 0.99439 1.00864 1.22353 0.97513 1.03180 0.94780 1.20402 0.80094 0.80782 0.86934 1.90701 1.45738 1.55198 1.56766 1.23052 1.02117 1.01223 0.77860 1.21399 0.92362 0.93633 0.86458 0.91424 1.42422 1.86532 1.06121 1.00673 1.19571 1.40708 0.92832 0.84351 0.90431 1.25459 1.03351 0.95839 1.01262 1.69785 1.58157 1.03975 1.29607 0.85318 0.78113 0.76854 0.80093 1.20452 1.22466 1.20589 0.91944 0.93223 0.90824 0.90651 0.90873 0.87181 0.85636 0.89449 0.91998 0.89700 0.88045 0.89790 0.91321 0.90449 0.93107 0.88088 0.92218 0.86865 0.89058 0.91766 0.91527 0.79078 0.94001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.45 9.30 71.98 0.67 -2.78 16 2 C -0.10 -3.13 3.27 -9.40 -0.03 -3.16 16 3 H 0.08 2.46 8.01 -2.39 -0.02 2.44 16 4 C 0.12 3.47 6.37 86.86 0.55 4.02 16 5 N -0.61 -19.71 3.33 -811.75 -2.70 -22.40 16 6 C 0.51 17.02 7.82 87.66 0.69 17.70 16 7 O -0.58 -21.72 16.60 -3.02 -0.05 -21.77 16 8 C 0.06 1.76 4.56 85.64 0.39 2.15 16 9 N -0.57 -13.89 1.49 -833.37 -1.24 -15.13 16 10 C 0.12 2.05 5.19 86.75 0.45 2.50 16 11 C -0.15 -1.67 5.63 30.67 0.17 -1.50 16 12 C -0.11 -1.10 5.21 30.12 0.16 -0.95 16 13 C -0.14 -1.95 5.65 29.92 0.17 -1.78 16 14 C -0.11 -1.47 5.61 30.44 0.17 -1.30 16 15 C -0.14 -2.59 5.52 30.01 0.17 -2.42 16 16 C 0.53 14.41 5.24 88.23 0.46 14.87 16 17 O -0.60 -21.80 15.58 -3.06 -0.05 -21.85 16 18 C 0.08 2.81 6.25 86.74 0.54 3.36 16 19 C 0.17 6.29 3.08 46.19 0.14 6.43 16 20 H 0.07 2.51 7.96 -2.39 -0.02 2.49 16 21 N -0.72 -33.30 5.15 -317.30 -1.64 -34.93 16 22 C -0.24 -12.59 9.96 84.03 0.84 -11.75 16 23 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 24 C -0.07 -3.61 5.50 84.86 0.47 -3.14 16 25 N -0.97 -56.30 13.06 21.65 0.28 -56.02 16 26 Si 0.97 44.32 29.55 68.60 2.03 46.35 16 27 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 28 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 29 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 30 H 0.06 1.58 8.11 -2.39 -0.02 1.56 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.08 2.20 8.04 -2.39 -0.02 2.18 16 34 H 0.07 2.06 8.04 -2.39 -0.02 2.04 16 35 H 0.11 3.44 6.58 -2.38 -0.02 3.42 16 36 H 0.13 2.89 7.79 -2.39 -0.02 2.87 16 37 H 0.09 1.24 7.88 -2.39 -0.02 1.23 16 38 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 39 H 0.09 1.06 4.13 -2.39 -0.01 1.05 16 40 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.08 0.55 7.84 -2.39 -0.02 0.53 16 42 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.05 0.99 4.91 -2.39 -0.01 0.97 16 45 H 0.10 0.84 7.72 -2.39 -0.02 0.82 16 46 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.11 1.71 5.09 -2.38 -0.01 1.69 16 48 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 49 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 50 H 0.07 2.36 8.03 -2.39 -0.02 2.34 16 51 H 0.38 18.91 7.76 -92.71 -0.72 18.19 16 52 H 0.25 14.36 8.31 -92.72 -0.77 13.59 16 Total: -1.00 -70.27 397.53 2.83 -67.44 By element: Atomic # 1 Polarization: 35.87 SS G_CDS: 0.19 Total: 36.07 kcal Atomic # 6 Polarization: 16.25 SS G_CDS: 6.00 Total: 22.25 kcal Atomic # 7 Polarization: -123.19 SS G_CDS: -5.30 Total: -128.49 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -0.10 Total: -43.62 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -70.27 2.83 -67.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054702351.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.969 kcal (2) G-P(sol) polarization free energy of solvation -70.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds