Wall clock time and date at job start Tue Mar 31 2020 20:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46923 * 2 1 4 4 C 1.50697 * 109.47196 * 120.00517 * 2 1 3 5 5 O 1.21280 * 119.99956 * 83.35673 * 4 2 1 6 6 N 1.34873 * 120.00205 * 263.34960 * 4 2 1 7 7 C 1.47756 * 121.42909 * 5.11584 * 6 4 2 8 8 C 1.52857 * 109.35272 * 95.97255 * 7 6 4 9 9 C 1.50751 * 109.61069 * 69.15236 * 8 7 6 10 10 O 1.21277 * 120.28723 * 68.05836 * 9 8 7 11 11 N 1.36081 * 118.91259 * 247.84591 * 9 8 7 12 12 C 1.47598 * 116.96065 * 168.58494 * 11 9 8 13 13 C 1.52985 * 108.90626 * 237.15916 * 12 11 9 14 14 N 1.47741 * 109.10622 * 65.29430 * 13 12 11 15 15 C 1.36993 * 121.47541 * 101.38839 * 14 13 12 16 16 H 1.08005 * 119.99880 * 336.18933 * 15 14 13 17 17 C 1.38808 * 120.00222 * 156.18810 * 15 14 13 18 18 N 1.31615 * 120.00057 * 343.02677 * 17 15 14 19 19 Si 1.86806 * 119.99984 * 163.03077 * 17 15 14 20 20 H 1.48498 * 109.47163 * 359.97438 * 19 17 15 21 21 H 1.48493 * 109.47157 * 119.99904 * 19 17 15 22 22 H 1.48499 * 109.47012 * 240.00238 * 19 17 15 23 23 C 1.47795 * 116.77223 * 281.03533 * 14 13 12 24 24 C 1.47705 * 121.80222 * 185.73180 * 6 4 2 25 25 C 1.52999 * 109.46885 * 240.00805 * 2 1 3 26 26 C 1.53782 * 113.61597 * 157.49618 * 25 2 1 27 27 C 1.53773 * 87.08483 * 220.01580 * 26 25 2 28 28 C 1.53784 * 113.61724 * 59.99945 * 25 2 1 29 29 H 1.08995 * 109.46852 * 185.56352 * 1 2 3 30 30 H 1.09000 * 109.46784 * 305.56337 * 1 2 3 31 31 H 1.08999 * 109.46941 * 65.56680 * 1 2 3 32 32 H 1.09095 * 109.44344 * 336.00462 * 7 6 4 33 33 H 1.09048 * 109.55285 * 216.13701 * 7 6 4 34 34 H 1.09106 * 109.37902 * 188.94082 * 8 7 6 35 35 H 1.08937 * 109.73034 * 308.83474 * 8 7 6 36 36 H 0.97104 * 121.59325 * 349.80012 * 11 9 8 37 37 H 1.08886 * 110.00523 * 357.29808 * 12 11 9 38 38 H 1.09106 * 109.44982 * 117.59283 * 12 11 9 39 39 H 1.09058 * 109.50353 * 185.11816 * 13 12 11 40 40 H 1.08997 * 109.60840 * 305.25166 * 13 12 11 41 41 H 0.97008 * 119.99962 * 179.97438 * 18 17 15 42 42 H 1.09157 * 109.24545 * 245.25216 * 23 14 13 43 43 H 1.08969 * 109.39389 * 4.91793 * 23 14 13 44 44 H 1.09030 * 109.37352 * 180.60249 * 24 6 4 45 45 H 1.09163 * 109.29055 * 61.02049 * 24 6 4 46 46 H 1.09003 * 112.85045 * 288.79913 * 25 2 1 47 47 H 1.09007 * 113.61318 * 334.56795 * 26 25 2 48 48 H 1.09004 * 113.61667 * 105.46566 * 26 25 2 49 49 H 1.09001 * 113.61697 * 270.88319 * 27 26 25 50 50 H 1.08999 * 113.61871 * 139.97646 * 27 26 25 51 51 H 1.08998 * 113.61272 * 254.52705 * 28 25 2 52 52 H 1.08991 * 113.61587 * 25.34878 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.1199 -1.9201 1.2388 6 7 2.3847 -0.0012 2.3221 7 6 2.1867 1.4615 2.3875 8 6 0.8692 1.7630 3.1014 9 6 0.9899 1.4018 4.5600 10 8 1.7202 2.0385 5.2894 11 7 0.2642 0.3559 5.0411 12 6 0.6011 -0.1258 6.3950 13 6 0.9578 -1.6115 6.3179 14 7 2.1926 -1.7717 5.5227 15 6 3.4076 -1.9766 6.1215 16 1 3.5692 -1.6537 7.1394 17 6 4.4309 -2.5991 5.4201 18 7 4.1594 -3.2843 4.3297 19 14 6.1936 -2.4645 6.0239 20 1 6.2316 -1.6450 7.2617 21 1 6.7232 -3.8215 6.3117 22 1 7.0272 -1.8192 4.9780 23 6 2.0508 -1.7082 4.0529 24 6 2.9978 -0.6430 3.5028 25 6 2.0400 -0.7211 -1.2494 26 6 3.4726 -0.3275 -1.6462 27 6 2.9922 -0.3569 -3.1067 28 6 1.5810 -0.0720 -2.5658 29 1 -0.3633 -1.0228 0.0996 30 1 -0.3633 0.5977 0.8360 31 1 -0.3633 0.4251 -0.9356 32 1 2.1549 1.8693 1.3761 33 1 3.0124 1.9174 2.9348 34 1 0.6436 2.8266 3.0112 35 1 0.0647 1.1846 2.6484 36 1 -0.4316 -0.0667 4.5118 37 1 1.4482 0.4333 6.7892 38 1 -0.2595 0.0068 7.0524 39 1 1.1201 -1.9996 7.3241 40 1 0.1434 -2.1591 5.8437 41 1 4.8746 -3.7191 3.8393 42 1 2.3037 -2.6799 3.6247 43 1 1.0208 -1.4589 3.7992 44 1 3.1895 0.1117 4.2659 45 1 3.9413 -1.1081 3.2111 46 1 1.8758 -1.7981 -1.2131 47 1 3.7639 0.6651 -1.3023 48 1 4.2152 -1.0913 -1.4153 49 1 3.0896 -1.3346 -3.5788 50 1 3.3974 0.4508 -3.7161 51 1 0.7965 -0.6296 -3.0773 52 1 1.3538 0.9899 -2.4730 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070973256.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:42 Heat of formation + Delta-G solvation = -18.212727 kcal Electronic energy + Delta-G solvation = -32694.719038 eV Core-core repulsion = 28695.997157 eV Total energy + Delta-G solvation = -3998.721881 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.24956 -39.26883 -38.05700 -36.08226 -35.33725 -33.81534 -32.73152 -31.38159 -30.51936 -29.18834 -26.84736 -26.11498 -25.29519 -24.52678 -23.80482 -22.93448 -21.50132 -20.40329 -19.79158 -19.40934 -18.26587 -17.10676 -16.71611 -16.54158 -15.92748 -15.43429 -15.34425 -14.98024 -14.66771 -14.54319 -14.22468 -13.80975 -13.56620 -13.42709 -12.92444 -12.87684 -12.82982 -12.67295 -12.56482 -12.34368 -12.14534 -12.06154 -11.91542 -11.64912 -11.56755 -11.31708 -11.10583 -11.00223 -10.79663 -10.60475 -10.50087 -10.43714 -10.31497 -10.12988 -9.97757 -9.88331 -9.54400 -9.37218 -8.97375 -8.79934 -8.36540 -8.09779 -6.62414 -5.56614 -3.14385 2.95846 3.19250 3.41028 3.44546 3.50543 3.52266 3.72932 4.47033 4.54385 4.56971 4.66353 4.80265 4.83936 4.90566 5.08455 5.19684 5.24190 5.30625 5.41311 5.44239 5.51218 5.53498 5.60406 5.65475 5.70935 5.73008 5.75680 5.82086 5.88815 5.95314 6.00422 6.03453 6.08056 6.14696 6.17670 6.24052 6.41664 6.47344 6.53323 6.59031 6.74386 6.94056 6.96678 7.04940 7.39378 7.82224 7.93492 7.96516 8.15944 8.45234 8.63493 8.79624 9.25869 9.88494 10.45346 11.37004 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011001 B = 0.004899 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.694245 B = 5713.620005 C = 7235.543618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 H 0.085 0.915 4 C 0.515 3.485 5 O -0.517 6.517 6 N -0.618 5.618 7 C 0.115 3.885 8 C -0.160 4.160 9 C 0.525 3.475 10 O -0.543 6.543 11 N -0.722 5.722 12 C 0.085 3.915 13 C 0.127 3.873 14 N -0.592 5.592 15 C -0.251 4.251 16 H 0.067 0.933 17 C 0.003 3.997 18 N -0.886 5.886 19 Si 0.893 3.107 20 H -0.278 1.278 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.161 3.839 24 C 0.118 3.882 25 C -0.092 4.092 26 C -0.139 4.139 27 C -0.141 4.141 28 C -0.134 4.134 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.398 0.602 37 H 0.092 0.908 38 H 0.049 0.951 39 H 0.063 0.937 40 H 0.032 0.968 41 H 0.252 0.748 42 H 0.090 0.910 43 H 0.019 0.981 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.102 0.898 47 H 0.078 0.922 48 H 0.068 0.932 49 H 0.078 0.922 50 H 0.064 0.936 51 H 0.065 0.935 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.771 10.286 -11.550 18.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.125 4.125 3 H 0.103 0.897 4 C 0.302 3.698 5 O -0.392 6.392 6 N -0.353 5.353 7 C -0.010 4.010 8 C -0.202 4.202 9 C 0.311 3.689 10 O -0.420 6.420 11 N -0.375 5.375 12 C -0.041 4.041 13 C -0.001 4.001 14 N -0.315 5.315 15 C -0.380 4.380 16 H 0.085 0.915 17 C -0.196 4.196 18 N -0.530 5.530 19 Si 0.723 3.277 20 H -0.203 1.203 21 H -0.218 1.218 22 H -0.217 1.217 23 C 0.036 3.964 24 C -0.003 4.003 25 C -0.111 4.111 26 C -0.177 4.177 27 C -0.179 4.179 28 C -0.171 4.171 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.118 0.882 35 H 0.099 0.901 36 H 0.233 0.767 37 H 0.110 0.890 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.050 0.950 41 H 0.062 0.938 42 H 0.107 0.893 43 H 0.038 0.962 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.120 0.880 47 H 0.096 0.904 48 H 0.087 0.913 49 H 0.097 0.903 50 H 0.083 0.917 51 H 0.084 0.916 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.048 9.902 -11.113 17.419 hybrid contribution 0.737 -0.005 0.068 0.740 sum -8.312 9.897 -11.044 17.000 Atomic orbital electron populations 1.21706 0.92990 1.02901 1.01962 1.21384 0.97460 0.99999 0.93653 0.89659 1.20369 0.78013 0.87814 0.83585 1.90759 1.52456 1.13569 1.82401 1.49066 1.62113 1.06879 1.17273 1.21708 0.96194 0.82456 1.00638 1.22249 1.00343 1.03412 0.94199 1.20604 0.79223 0.79767 0.89271 1.90676 1.39374 1.51599 1.60386 1.46466 1.38348 1.33855 1.18792 1.22550 1.00264 0.98900 0.82361 1.21425 0.89949 0.92025 0.96670 1.44566 1.02379 1.83492 1.01029 1.19073 0.88041 1.32205 0.98688 0.91544 1.24943 0.98379 0.97942 0.98326 1.69985 1.30637 1.33626 1.18722 0.86353 0.85845 0.77286 0.78188 1.20336 1.21823 1.21740 1.21366 0.92740 0.99488 0.82837 1.22542 0.97760 0.96200 0.83843 1.22459 0.95894 1.00930 0.91814 1.22968 0.97015 1.01747 0.95951 1.22781 0.96853 1.01708 0.96544 1.22937 0.96906 1.00731 0.96552 0.91804 0.92456 0.91690 0.89716 0.89690 0.88196 0.90086 0.76672 0.88990 0.93251 0.91849 0.94978 0.93773 0.89273 0.96219 0.91057 0.91298 0.87979 0.90388 0.91344 0.90300 0.91726 0.91586 0.90245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.07 37.16 0.34 -1.05 16 2 C -0.10 -1.25 2.01 -91.77 -0.18 -1.43 16 3 H 0.09 0.87 5.56 -51.93 -0.29 0.58 16 4 C 0.52 8.88 6.48 -10.94 -0.07 8.80 16 5 O -0.52 -11.41 15.05 5.56 0.08 -11.33 16 6 N -0.62 -10.70 2.62 -171.74 -0.45 -11.16 16 7 C 0.11 1.52 5.55 -3.43 -0.02 1.50 16 8 C -0.16 -1.94 6.07 -27.93 -0.17 -2.11 16 9 C 0.52 8.61 5.10 -10.37 -0.05 8.56 16 10 O -0.54 -11.06 16.17 5.56 0.09 -10.97 16 11 N -0.72 -11.18 3.67 -59.19 -0.22 -11.40 16 12 C 0.09 1.46 6.64 -3.45 -0.02 1.44 16 13 C 0.13 2.49 6.07 -3.37 -0.02 2.47 16 14 N -0.59 -14.35 2.71 -171.23 -0.46 -14.82 16 15 C -0.25 -6.79 9.25 -15.03 -0.14 -6.93 16 16 H 0.07 1.80 7.89 -52.48 -0.41 1.39 16 17 C 0.00 0.10 4.47 -17.43 -0.08 0.02 16 18 N -0.89 -25.82 9.92 55.49 0.55 -25.27 16 19 Si 0.89 22.19 29.59 -169.99 -5.03 17.16 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 C 0.16 3.81 3.51 -3.44 -0.01 3.80 16 24 C 0.12 2.66 4.10 -3.49 -0.01 2.64 16 25 C -0.09 -1.11 2.92 -89.81 -0.26 -1.37 16 26 C -0.14 -1.62 7.62 -25.92 -0.20 -1.82 16 27 C -0.14 -1.33 8.08 -25.92 -0.21 -1.54 16 28 C -0.13 -1.21 6.58 -25.91 -0.17 -1.38 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.51 6.46 -51.93 -0.34 0.18 16 31 H 0.06 0.52 7.26 -51.93 -0.38 0.14 16 32 H 0.08 0.84 5.63 -51.88 -0.29 0.55 16 33 H 0.08 1.25 7.85 -51.90 -0.41 0.84 16 34 H 0.10 0.96 8.15 -51.87 -0.42 0.54 16 35 H 0.08 0.84 6.25 -51.96 -0.32 0.52 16 36 H 0.40 5.28 8.28 -40.78 -0.34 4.94 16 37 H 0.09 1.87 6.83 -51.99 -0.35 1.52 16 38 H 0.05 0.71 8.15 -51.87 -0.42 0.28 16 39 H 0.06 1.23 8.02 -51.90 -0.42 0.81 16 40 H 0.03 0.60 8.08 -51.93 -0.42 0.18 16 41 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.09 2.56 5.76 -51.84 -0.30 2.27 16 43 H 0.02 0.42 6.09 -51.95 -0.32 0.11 16 44 H 0.07 1.72 6.38 -51.91 -0.33 1.38 16 45 H 0.07 1.82 6.97 -51.84 -0.36 1.46 16 46 H 0.10 1.46 7.65 -51.93 -0.40 1.07 16 47 H 0.08 0.85 7.96 -51.93 -0.41 0.43 16 48 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 50 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 51 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 52 H 0.08 0.63 8.10 -51.93 -0.42 0.20 16 LS Contribution 386.93 15.07 5.83 5.83 Total: -1.00 -33.35 386.93 -9.49 -42.84 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -8.60 Total: 7.51 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: -1.29 Total: 11.60 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: -0.58 Total: -62.64 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: 0.17 Total: -22.30 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.16 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.35 -9.49 -42.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070973256.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.627 kcal (2) G-P(sol) polarization free energy of solvation -33.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds