Wall clock time and date at job start Tue Mar 31 2020 20:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47676 * 2 1 4 4 C 1.53004 * 109.47092 * 120.00468 * 2 1 3 5 5 N 1.46500 * 109.47042 * 64.99900 * 4 2 1 6 6 C 1.46827 * 124.32659 * 269.98459 * 5 4 2 7 7 C 1.54487 * 105.43940 * 197.00022 * 6 5 4 8 8 H 1.09000 * 110.96692 * 92.76805 * 7 6 5 9 9 C 1.50704 * 110.97026 * 216.49265 * 7 6 5 10 10 O 1.21286 * 119.99580 * 356.91419 * 9 7 6 11 11 N 1.34779 * 119.99993 * 176.91380 * 9 7 6 12 12 C 1.46494 * 119.99841 * 180.02562 * 11 9 7 13 13 H 1.09007 * 110.64309 * 31.85680 * 12 11 9 14 14 C 1.54335 * 111.00223 * 268.77832 * 12 11 9 15 15 N 1.47019 * 107.26712 * 219.59939 * 14 12 11 16 16 C 1.36929 * 125.65063 * 178.84923 * 15 14 12 17 17 H 1.08003 * 120.00304 * 176.14881 * 16 15 14 18 18 C 1.38816 * 120.00114 * 356.14716 * 16 15 14 19 19 N 1.31616 * 120.00386 * 211.26927 * 18 16 15 20 20 Si 1.86799 * 119.99639 * 31.26718 * 18 16 15 21 21 H 1.48502 * 109.47496 * 275.30623 * 20 18 16 22 22 H 1.48502 * 109.47344 * 35.30445 * 20 18 16 23 23 H 1.48502 * 109.47320 * 155.30680 * 20 18 16 24 24 C 1.47429 * 108.70189 * 358.58974 * 15 14 12 25 25 C 1.54909 * 104.83114 * 24.35101 * 24 15 14 26 26 H 1.09002 * 111.00252 * 81.10670 * 25 24 15 27 27 C 1.53002 * 111.00270 * 204.91537 * 25 24 15 28 28 C 1.54625 * 101.80011 * 334.62957 * 7 6 5 29 29 C 1.34412 * 124.35410 * 90.02368 * 5 4 2 30 30 O 1.21277 * 124.94332 * 359.62931 * 29 5 4 31 31 H 1.08997 * 109.47593 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46826 * 300.00548 * 1 2 3 33 33 H 1.09002 * 109.47018 * 59.99834 * 1 2 3 34 34 H 1.09006 * 109.47002 * 239.99895 * 2 1 3 35 35 H 1.08998 * 109.47127 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.47033 * 300.00156 * 3 2 1 37 37 H 1.08995 * 109.46692 * 60.00260 * 3 2 1 38 38 H 1.08993 * 109.46763 * 304.99523 * 4 2 1 39 39 H 1.09003 * 109.46883 * 184.99440 * 4 2 1 40 40 H 1.08995 * 110.24056 * 78.02874 * 6 5 4 41 41 H 1.08995 * 110.28650 * 316.00169 * 6 5 4 42 42 H 0.97000 * 119.99349 * 359.97438 * 11 9 7 43 43 H 1.09006 * 109.98742 * 100.12916 * 14 12 11 44 44 H 1.08998 * 109.77654 * 338.96199 * 14 12 11 45 45 H 0.96998 * 119.99890 * 354.97283 * 19 18 16 46 46 H 1.08999 * 110.36759 * 143.19547 * 24 15 14 47 47 H 1.08998 * 110.36330 * 265.51417 * 24 15 14 48 48 H 1.09004 * 109.47112 * 58.55222 * 27 25 24 49 49 H 1.09000 * 109.47259 * 178.54501 * 27 25 24 50 50 H 1.08994 * 109.47487 * 298.54968 * 27 25 24 51 51 H 1.09009 * 110.48360 * 143.45579 * 28 7 6 52 52 H 1.09000 * 110.49031 * 266.10088 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7214 1.2492 5 7 1.6523 -2.1329 1.1904 6 6 0.3974 -2.6702 1.7310 7 6 0.6155 -4.1958 1.8383 8 1 0.9817 -4.4687 2.8280 9 6 -0.6492 -4.9460 1.5085 10 8 -1.6693 -4.3370 1.2641 11 7 -0.6468 -6.2936 1.4850 12 6 -1.8760 -7.0228 1.1638 13 1 -2.4892 -6.4534 0.4651 14 6 -2.6755 -7.3497 2.4428 15 7 -3.2188 -8.7065 2.2829 16 6 -3.9709 -9.3791 3.2086 17 1 -4.3767 -10.3515 2.9712 18 6 -4.2120 -8.8113 4.4521 19 7 -4.3570 -9.5808 5.5100 20 14 -4.3305 -6.9551 4.6241 21 1 -2.9683 -6.3842 4.7786 22 1 -4.9712 -6.3854 3.4115 23 1 -5.1461 -6.6196 5.8189 24 6 -2.8249 -9.2204 0.9585 25 6 -1.5476 -8.4258 0.5886 26 1 -0.6688 -8.8514 1.0730 27 6 -1.3590 -8.3662 -0.9286 28 6 1.6987 -4.4369 0.7616 29 6 2.4000 -3.1023 0.6356 30 8 3.4802 -2.9321 0.1110 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 3.1301 1.4424 0.0005 36 1 1.6768 1.9563 -0.8900 37 1 1.6768 1.9562 0.8900 38 1 1.6054 -0.2619 2.1369 39 1 3.1263 -0.6445 1.2950 40 1 -0.4283 -2.4541 1.0530 41 1 0.1984 -2.2474 2.7157 42 1 0.1692 -6.7804 1.6801 43 1 -3.4904 -6.6362 2.5654 44 1 -2.0154 -7.3144 3.3094 45 1 -4.3683 -10.5456 5.4101 46 1 -2.6055 -10.2866 1.0152 47 1 -3.6129 -9.0327 0.2291 48 1 -2.2313 -7.8984 -1.3851 49 1 -0.4694 -7.7809 -1.1614 50 1 -1.2419 -9.3766 -1.3202 51 1 2.3981 -5.2060 1.0896 52 1 1.2389 -4.7171 -0.1861 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079799604.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:00 Heat of formation + Delta-G solvation = -50.151876 kcal Electronic energy + Delta-G solvation = -30500.642705 eV Core-core repulsion = 26500.535838 eV Total energy + Delta-G solvation = -4000.106867 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.14995 -39.66148 -37.96920 -37.00709 -35.80332 -34.24054 -32.92387 -32.09268 -31.03799 -28.36132 -28.09192 -27.36248 -26.58501 -26.07987 -23.95046 -22.61066 -21.06673 -20.72770 -20.53987 -19.75280 -19.51247 -17.75191 -17.46205 -17.05165 -16.38880 -16.26699 -15.63160 -15.31822 -15.01308 -14.75543 -14.49326 -14.40184 -13.88132 -13.78449 -13.44737 -13.34692 -13.18526 -13.11573 -13.04410 -13.00032 -12.64516 -12.58516 -12.12785 -12.09160 -11.84614 -11.77429 -11.67987 -11.60063 -11.18810 -11.14522 -11.05624 -11.04148 -10.74623 -10.53789 -10.24161 -10.14975 -9.83550 -9.67855 -9.37607 -8.97622 -8.82183 -8.37111 -7.10078 -6.40134 -3.15477 2.29127 2.49057 2.62487 3.10065 3.42041 3.53294 3.67895 3.92696 4.02235 4.44872 4.45807 4.51716 4.57917 4.60012 4.72638 4.74907 4.89813 4.95836 5.03852 5.14622 5.16711 5.20108 5.22111 5.27882 5.30669 5.38446 5.39749 5.45541 5.51610 5.54178 5.66318 5.66970 5.70985 5.76537 5.82553 5.90760 5.93611 6.02720 6.07597 6.22048 6.24154 6.30962 6.44120 6.51204 6.72374 6.78689 6.79242 7.47624 7.67305 7.87179 8.15371 8.31165 9.01551 9.58599 10.24174 11.11190 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015844 B = 0.002844 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.815274 B = 9843.524035 C =10738.019586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.144 4.144 4 C 0.131 3.869 5 N -0.616 5.616 6 C 0.113 3.887 7 C -0.126 4.126 8 H 0.120 0.880 9 C 0.525 3.475 10 O -0.532 6.532 11 N -0.711 5.711 12 C 0.138 3.862 13 H 0.098 0.902 14 C 0.098 3.902 15 N -0.609 5.609 16 C -0.338 4.338 17 H 0.080 0.920 18 C -0.017 4.017 19 N -0.911 5.911 20 Si 1.063 2.937 21 H -0.295 1.295 22 H -0.291 1.291 23 H -0.299 1.299 24 C 0.143 3.857 25 C -0.112 4.112 26 H 0.082 0.918 27 C -0.138 4.138 28 C -0.145 4.145 29 C 0.521 3.479 30 O -0.532 6.532 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.401 0.599 43 H 0.041 0.959 44 H 0.045 0.955 45 H 0.264 0.736 46 H 0.049 0.951 47 H 0.024 0.976 48 H 0.056 0.944 49 H 0.052 0.948 50 H 0.057 0.943 51 H 0.111 0.889 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.173 15.918 -11.145 24.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.135 4.135 3 C -0.202 4.202 4 C 0.009 3.991 5 N -0.349 5.349 6 C -0.009 4.009 7 C -0.148 4.148 8 H 0.138 0.862 9 C 0.309 3.691 10 O -0.409 6.409 11 N -0.361 5.361 12 C 0.033 3.967 13 H 0.116 0.884 14 C -0.028 4.028 15 N -0.337 5.337 16 C -0.464 4.464 17 H 0.098 0.902 18 C -0.218 4.218 19 N -0.552 5.552 20 Si 0.897 3.103 21 H -0.223 1.223 22 H -0.219 1.219 23 H -0.227 1.227 24 C 0.017 3.983 25 C -0.132 4.132 26 H 0.101 0.899 27 C -0.195 4.195 28 C -0.185 4.185 29 C 0.308 3.692 30 O -0.409 6.409 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.115 0.885 41 H 0.105 0.895 42 H 0.236 0.764 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.042 0.958 48 H 0.075 0.925 49 H 0.071 0.929 50 H 0.076 0.924 51 H 0.130 0.870 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 13.754 17.673 -10.406 24.694 hybrid contribution 0.347 -1.471 -0.915 1.767 sum 14.101 16.202 -11.321 24.280 Atomic orbital electron populations 1.21956 0.94617 1.02440 1.01876 1.21548 0.96639 0.96440 0.98830 1.21767 1.01083 0.95274 1.02111 1.21515 1.00749 0.78697 0.98138 1.48311 1.20340 1.07810 1.58447 1.22144 0.86743 0.90972 1.01087 1.22279 0.94586 0.96112 1.01820 0.86166 1.20014 0.89368 0.82646 0.77057 1.90733 1.33786 1.67790 1.48560 1.45933 1.13583 1.05892 1.70682 1.22121 0.85253 0.91957 0.97379 0.88372 1.22106 0.96453 0.88601 0.95683 1.44757 1.61398 1.12437 1.15083 1.19951 1.31557 1.01102 0.93813 0.90213 1.25620 0.99567 1.06386 0.90276 1.70922 1.50582 1.05924 1.27746 0.83903 0.76271 0.76017 0.74129 1.22263 1.21904 1.22695 1.21568 0.92230 0.96801 0.87746 1.22638 1.00160 0.94823 0.95585 0.89948 1.21693 1.01480 1.01652 0.94702 1.22351 0.98029 0.97354 1.00769 1.20733 0.84437 0.86802 0.77181 1.90730 1.20548 1.85029 1.44550 0.92003 0.92530 0.92662 0.90860 0.92502 0.92313 0.92455 0.90122 0.89923 0.88539 0.89529 0.76407 0.94192 0.93699 0.92596 0.93251 0.95821 0.92514 0.92914 0.92376 0.87039 0.87232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.87 37.15 0.33 -0.85 16 2 C -0.11 -0.90 3.13 -90.62 -0.28 -1.18 16 3 C -0.14 -0.90 9.19 37.16 0.34 -0.56 16 4 C 0.13 1.04 5.35 -4.04 -0.02 1.02 16 5 N -0.62 -5.69 2.71 -172.36 -0.47 -6.16 16 6 C 0.11 1.02 6.03 -3.08 -0.02 1.00 16 7 C -0.13 -1.12 3.54 -90.13 -0.32 -1.44 16 8 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 9 C 0.52 6.65 7.06 -10.98 -0.08 6.57 16 10 O -0.53 -8.78 15.18 5.55 0.08 -8.69 16 11 N -0.71 -8.94 5.11 -52.03 -0.27 -9.20 16 12 C 0.14 2.23 2.77 -66.10 -0.18 2.04 16 13 H 0.10 1.67 7.42 -51.93 -0.39 1.29 16 14 C 0.10 2.12 4.59 -3.06 -0.01 2.11 16 15 N -0.61 -14.69 3.38 -170.06 -0.57 -15.26 16 16 C -0.34 -9.58 10.42 -15.06 -0.16 -9.74 16 17 H 0.08 2.37 8.06 -52.48 -0.42 1.94 16 18 C -0.02 -0.51 5.45 -17.43 -0.09 -0.60 16 19 N -0.91 -28.30 13.70 55.49 0.76 -27.54 16 20 Si 1.06 27.30 24.66 -169.99 -4.19 23.11 16 21 H -0.29 -7.17 6.37 56.52 0.36 -6.81 16 22 H -0.29 -7.31 6.35 56.52 0.36 -6.95 16 23 H -0.30 -7.74 7.11 56.52 0.40 -7.33 16 24 C 0.14 2.72 6.70 -2.53 -0.02 2.70 16 25 C -0.11 -1.63 3.27 -88.47 -0.29 -1.92 16 26 H 0.08 1.13 8.01 -51.93 -0.42 0.71 16 27 C -0.14 -1.57 9.29 37.16 0.35 -1.22 16 28 C -0.14 -1.20 6.40 -26.74 -0.17 -1.37 16 29 C 0.52 5.71 8.02 -10.86 -0.09 5.62 16 30 O -0.53 -7.73 17.59 5.56 0.10 -7.63 16 31 H 0.06 0.56 5.44 -51.93 -0.28 0.28 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.71 7.93 -51.93 -0.41 0.29 16 40 H 0.10 1.00 5.05 -51.93 -0.26 0.73 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.40 3.87 8.56 -40.82 -0.35 3.52 16 43 H 0.04 0.97 4.45 -51.93 -0.23 0.74 16 44 H 0.05 1.03 6.59 -51.93 -0.34 0.69 16 45 H 0.26 8.06 8.73 -40.82 -0.36 7.70 16 46 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 47 H 0.02 0.45 8.04 -51.93 -0.42 0.03 16 48 H 0.06 0.66 8.11 -51.93 -0.42 0.24 16 49 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.11 0.73 8.14 -51.92 -0.42 0.31 16 52 H 0.11 0.90 7.89 -51.93 -0.41 0.49 16 LS Contribution 402.37 15.07 6.06 6.06 Total: -1.00 -35.39 402.37 -8.29 -43.68 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -9.08 Total: -0.56 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -0.72 Total: 2.18 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: -0.55 Total: -58.16 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: 0.18 Total: -16.32 kcal Atomic # 14 Polarization: 27.30 SS G_CDS: -4.19 Total: 23.11 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.39 -8.29 -43.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079799604.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.472 kcal (2) G-P(sol) polarization free energy of solvation -35.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds