Wall clock time and date at job start Tue Mar 31 2020 20:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.91320 * 2 1 4 4 C 1.54910 * 111.00515 * 236.10310 * 2 1 3 5 5 N 1.47423 * 104.83589 * 204.91426 * 4 2 1 6 6 C 1.36932 * 125.65449 * 204.16292 * 5 4 2 7 7 H 1.08002 * 119.99285 * 359.97438 * 6 5 4 8 8 C 1.38813 * 120.00449 * 179.97438 * 6 5 4 9 9 N 1.31612 * 119.99831 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 119.99840 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46898 * 90.00272 * 10 8 6 12 12 H 1.48507 * 109.46899 * 209.99753 * 10 8 6 13 13 H 1.48499 * 109.47689 * 329.99842 * 10 8 6 14 14 C 1.47028 * 108.70158 * 24.12773 * 5 4 2 15 15 C 1.54327 * 107.26800 * 358.94228 * 14 5 4 16 16 H 1.08990 * 110.72112 * 96.35123 * 15 14 5 17 17 N 1.46505 * 110.71891 * 219.44304 * 15 14 5 18 18 C 1.34769 * 120.00293 * 273.55142 * 17 15 14 19 19 O 1.21284 * 119.99933 * 359.97438 * 18 17 15 20 20 C 1.50702 * 120.00524 * 180.02562 * 18 17 15 21 21 H 1.09003 * 110.85305 * 297.66025 * 20 18 17 22 22 C 1.54630 * 110.96789 * 61.44503 * 20 18 17 23 23 C 1.51283 * 104.19073 * 93.36368 * 22 20 18 24 24 O 1.21280 * 124.93933 * 196.26964 * 23 22 20 25 25 N 1.34412 * 110.11796 * 16.25336 * 23 22 20 26 26 C 1.46504 * 124.35194 * 180.41070 * 25 23 22 27 27 C 1.53006 * 109.46883 * 0.02562 * 26 25 23 28 28 C 1.52999 * 109.47050 * 240.02528 * 26 25 23 29 29 C 1.52997 * 109.47417 * 120.01816 * 26 25 23 30 30 C 1.46761 * 111.30449 * 0.67116 * 25 23 22 31 31 H 1.08999 * 109.47058 * 296.09128 * 1 2 3 32 32 H 1.09001 * 109.47506 * 56.09749 * 1 2 3 33 33 H 1.08998 * 109.46957 * 176.09560 * 1 2 3 34 34 H 1.09001 * 110.36931 * 86.07700 * 4 2 1 35 35 H 1.09006 * 110.36837 * 323.75224 * 4 2 1 36 36 H 0.97004 * 120.00120 * 179.97438 * 9 8 6 37 37 H 1.09003 * 109.88292 * 239.52442 * 14 5 4 38 38 H 1.08995 * 110.01020 * 118.42829 * 14 5 4 39 39 H 0.97000 * 119.99797 * 93.54642 * 17 15 14 40 40 H 1.08996 * 110.49015 * 334.68518 * 22 20 18 41 41 H 1.09006 * 110.48128 * 212.03793 * 22 20 18 42 42 H 1.09001 * 109.46801 * 300.00349 * 27 26 25 43 43 H 1.09001 * 109.46998 * 59.99945 * 27 26 25 44 44 H 1.09000 * 109.47050 * 180.02562 * 27 26 25 45 45 H 1.09000 * 109.47160 * 179.97438 * 28 26 25 46 46 H 1.09002 * 109.46719 * 299.99449 * 28 26 25 47 47 H 1.08993 * 109.47839 * 59.99291 * 28 26 25 48 48 H 1.09001 * 109.47375 * 300.00052 * 29 26 25 49 49 H 1.09002 * 109.46777 * 60.00607 * 29 26 25 50 50 H 1.09000 * 109.47140 * 180.02562 * 29 26 25 51 51 H 1.08998 * 110.25115 * 101.71834 * 30 25 23 52 52 H 1.09000 * 110.25193 * 223.72436 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0852 -0.8065 -1.2004 5 7 3.4271 -1.2430 -0.7735 6 6 4.4644 -1.5652 -1.6073 7 1 4.3338 -1.5098 -2.6780 8 6 5.6838 -1.9631 -1.0765 9 7 5.8431 -2.0302 0.2282 10 14 7.0985 -2.4034 -2.2141 11 1 7.9013 -1.1870 -2.4992 12 1 7.9592 -3.4229 -1.5620 13 1 6.5599 -2.9502 -3.4854 14 6 3.4675 -1.2742 0.6959 15 6 2.0861 -0.8080 1.2021 16 1 1.4479 -1.6633 1.4238 17 7 2.2286 0.0494 2.3815 18 6 2.3023 -0.5006 3.6096 19 8 2.2501 -1.7055 3.7386 20 6 2.4483 0.3813 4.8228 21 1 3.3804 0.9449 4.7829 22 6 1.2346 1.3285 4.9676 23 6 0.2910 0.5845 5.8867 24 8 -0.8844 0.8444 6.0335 25 7 0.9449 -0.4067 6.5165 26 6 0.3260 -1.3285 7.4724 27 6 -1.1559 -0.9816 7.6291 28 6 1.0253 -1.2033 8.8275 29 6 0.4623 -2.7632 6.9587 30 6 2.3597 -0.4431 6.1284 31 1 -0.3633 0.4520 0.9229 32 1 -0.3634 0.5732 -0.8529 33 1 -0.3633 -1.0253 -0.0700 34 1 2.1560 -0.1718 -2.0837 35 1 1.4519 -1.6703 -1.4026 36 1 6.6951 -2.3086 0.5991 37 1 4.2427 -0.5998 1.0598 38 1 3.6662 -2.2884 1.0421 39 1 2.2700 1.0130 2.2783 40 1 0.7668 1.5001 3.9982 41 1 1.5397 2.2733 5.4177 42 1 -1.2530 0.0405 7.9950 43 1 -1.6540 -1.0708 6.6637 44 1 -1.6162 -1.6672 8.3406 45 1 0.5646 -1.8888 9.5388 46 1 2.0810 -1.4505 8.7157 47 1 0.9282 -0.1812 9.1934 48 1 -0.0359 -2.8524 5.9933 49 1 1.5180 -3.0104 6.8470 50 1 0.0015 -3.4490 7.6697 51 1 2.9759 0.0089 6.9056 52 1 2.6747 -1.4706 5.9463 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079800739.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:11 Heat of formation + Delta-G solvation = -44.629836 kcal Electronic energy + Delta-G solvation = -31168.783084 eV Core-core repulsion = 27168.915671 eV Total energy + Delta-G solvation = -3999.867413 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.16221 -39.35768 -37.61283 -36.79478 -35.53778 -33.96278 -32.66860 -30.68224 -30.38199 -28.04964 -27.82030 -27.49133 -27.12623 -25.65162 -24.16125 -22.88124 -21.64250 -20.50230 -19.99941 -19.44372 -18.72101 -17.46342 -16.88875 -16.68857 -15.95288 -15.69526 -15.27371 -14.96473 -14.58974 -14.24094 -14.14100 -13.92337 -13.78261 -13.70761 -13.49810 -13.11638 -12.87256 -12.80446 -12.68631 -12.37607 -12.21244 -12.09258 -12.04434 -11.77688 -11.74145 -11.70360 -11.56922 -11.35416 -11.26352 -11.11958 -11.03617 -10.79244 -10.60728 -10.40851 -9.99183 -9.94475 -9.73070 -9.52486 -9.48538 -8.76338 -8.63455 -8.51074 -6.84590 -5.70491 -3.05435 2.50443 2.81815 2.86144 3.36143 3.39904 3.44829 3.46904 4.14956 4.18226 4.48970 4.61860 4.66882 4.73786 4.81103 4.88932 5.04667 5.21487 5.26167 5.29868 5.34296 5.41014 5.43015 5.47169 5.51536 5.54004 5.59907 5.62416 5.68914 5.71676 5.74370 5.78364 5.93139 5.97409 5.98003 6.14387 6.18180 6.18994 6.21456 6.34219 6.47972 6.56285 6.61407 6.74601 6.91713 7.07235 7.53867 7.56840 7.82515 7.86636 8.11649 8.24456 8.51064 9.20799 9.81396 10.46291 11.40169 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016773 B = 0.002941 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.918630 B = 9517.018049 C =10415.267654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.230 4.230 7 H 0.079 0.921 8 C -0.008 4.008 9 N -0.919 5.919 10 Si 0.912 3.088 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.175 3.825 15 C 0.122 3.878 16 H 0.085 0.915 17 N -0.709 5.709 18 C 0.520 3.480 19 O -0.528 6.528 20 C -0.126 4.126 21 H 0.125 0.875 22 C -0.148 4.148 23 C 0.519 3.481 24 O -0.532 6.532 25 N -0.603 5.603 26 C 0.174 3.826 27 C -0.139 4.139 28 C -0.156 4.156 29 C -0.156 4.156 30 C 0.114 3.886 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.042 0.958 35 H 0.022 0.978 36 H 0.252 0.748 37 H 0.050 0.950 38 H 0.047 0.953 39 H 0.396 0.604 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.058 0.942 48 H 0.062 0.938 49 H 0.063 0.937 50 H 0.065 0.935 51 H 0.078 0.922 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.800 6.975 15.051 19.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.133 4.133 3 H 0.096 0.904 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.358 4.358 7 H 0.096 0.904 8 C -0.204 4.204 9 N -0.566 5.566 10 Si 0.742 3.258 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.207 1.207 14 C 0.049 3.951 15 C 0.017 3.983 16 H 0.103 0.897 17 N -0.359 5.359 18 C 0.304 3.696 19 O -0.404 6.404 20 C -0.147 4.147 21 H 0.143 0.857 22 C -0.188 4.188 23 C 0.307 3.693 24 O -0.409 6.409 25 N -0.337 5.337 26 C 0.091 3.909 27 C -0.197 4.197 28 C -0.214 4.214 29 C -0.214 4.214 30 C -0.009 4.009 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.039 0.961 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.229 0.771 40 H 0.123 0.877 41 H 0.131 0.869 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.081 0.919 49 H 0.082 0.918 50 H 0.084 0.916 51 H 0.096 0.904 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.265 6.068 15.286 19.386 hybrid contribution 1.120 0.227 -0.681 1.331 sum -9.144 6.295 14.605 18.345 Atomic orbital electron populations 1.21702 0.95017 1.01811 1.01022 1.22610 0.94814 0.99497 0.96403 0.90417 1.21592 0.87639 0.95025 0.94336 1.44413 1.07826 1.79225 1.01827 1.19050 0.89270 1.38552 0.88935 0.90354 1.24818 0.97867 1.01719 0.96020 1.69970 1.24114 1.53342 1.09185 0.86124 0.82314 0.77787 0.79551 1.21648 1.21675 1.20695 1.21455 0.89946 1.00373 0.83309 1.22498 1.00311 0.92657 0.82850 0.89660 1.45869 1.73962 1.10148 1.05955 1.20013 0.76622 0.88750 0.84171 1.90718 1.49095 1.14675 1.85926 1.22359 1.01010 0.97204 0.94168 0.85684 1.22407 0.95182 0.99269 1.01957 1.20728 0.87616 0.80352 0.80637 1.90718 1.15282 1.69035 1.65890 1.48346 1.10335 1.31719 1.43284 1.20464 0.93686 0.89073 0.87706 1.22089 0.92903 1.01910 1.02766 1.22181 1.00953 1.02331 0.95935 1.22159 1.02929 0.94511 1.01841 1.22009 0.82013 1.03016 0.93864 0.93106 0.92739 0.92630 0.93965 0.96051 0.93779 0.93192 0.93464 0.77063 0.87663 0.86900 0.91418 0.91300 0.92546 0.91331 0.92080 0.92306 0.91859 0.91792 0.91629 0.90403 0.88140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.31 37.16 0.35 -1.49 16 2 C -0.11 -1.84 3.25 -88.47 -0.29 -2.13 16 3 H 0.08 1.20 8.00 -51.93 -0.42 0.78 16 4 C 0.14 2.83 6.70 -2.53 -0.02 2.81 16 5 N -0.61 -15.33 3.39 -170.06 -0.58 -15.91 16 6 C -0.23 -6.38 10.28 -15.06 -0.15 -6.53 16 7 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 8 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 9 N -0.92 -27.06 10.31 55.49 0.57 -26.49 16 10 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 14 C 0.17 4.23 5.12 -3.06 -0.02 4.22 16 15 C 0.12 2.24 2.70 -66.09 -0.18 2.06 16 16 H 0.09 1.71 7.59 -51.93 -0.39 1.32 16 17 N -0.71 -10.51 4.85 -52.03 -0.25 -10.76 16 18 C 0.52 7.84 7.16 -10.99 -0.08 7.76 16 19 O -0.53 -10.19 15.26 5.55 0.08 -10.11 16 20 C -0.13 -1.29 3.54 -90.04 -0.32 -1.60 16 21 H 0.13 0.97 8.14 -51.93 -0.42 0.54 16 22 C -0.15 -1.39 6.39 -26.74 -0.17 -1.56 16 23 C 0.52 6.57 7.84 -10.86 -0.09 6.49 16 24 O -0.53 -8.28 13.99 5.56 0.08 -8.20 16 25 N -0.60 -6.85 2.76 -157.46 -0.43 -7.29 16 26 C 0.17 1.83 1.20 -131.82 -0.16 1.67 16 27 C -0.14 -1.55 7.00 37.16 0.26 -1.29 16 28 C -0.16 -1.27 8.53 37.16 0.32 -0.95 16 29 C -0.16 -1.68 8.50 37.16 0.32 -1.37 16 30 C 0.11 1.17 5.98 -3.03 -0.02 1.15 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.76 8.07 -51.93 -0.42 0.35 16 34 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.02 0.44 7.98 -51.93 -0.41 0.02 16 36 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.05 1.32 7.27 -51.93 -0.38 0.95 16 38 H 0.05 1.34 7.51 -51.93 -0.39 0.96 16 39 H 0.40 4.64 8.34 -40.82 -0.34 4.30 16 40 H 0.11 0.99 7.51 -51.93 -0.39 0.60 16 41 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.07 0.82 7.06 -51.93 -0.37 0.46 16 43 H 0.07 0.92 7.08 -51.93 -0.37 0.56 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.47 7.89 -51.93 -0.41 0.06 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 49 H 0.06 0.70 7.22 -51.93 -0.37 0.33 16 50 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 51 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 52 H 0.10 1.22 5.97 -51.93 -0.31 0.91 16 LS Contribution 403.62 15.07 6.08 6.08 Total: -1.00 -34.46 403.62 -8.98 -43.44 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -9.17 Total: 3.26 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: -0.34 Total: 8.92 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: -0.69 Total: -60.44 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: 0.16 Total: -18.31 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.46 -8.98 -43.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079800739.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.190 kcal (2) G-P(sol) polarization free energy of solvation -34.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds