Wall clock time and date at job start Tue Mar 31 2020 20:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47244 * 2 1 4 4 C 1.52998 * 109.46896 * 120.00462 * 2 1 3 5 5 C 1.50701 * 109.47143 * 184.99634 * 4 2 1 6 6 O 1.21284 * 119.99665 * 359.97438 * 5 4 2 7 7 N 1.34776 * 120.00176 * 179.97438 * 5 4 2 8 8 C 1.47019 * 125.65160 * 179.71549 * 7 5 4 9 9 C 1.54333 * 107.26911 * 178.84951 * 8 7 5 10 10 H 1.09004 * 110.66481 * 96.52219 * 9 8 7 11 11 C 1.52993 * 110.85094 * 219.67717 * 9 8 7 12 12 C 1.55165 * 103.01817 * 338.14347 * 9 8 7 13 13 H 1.08993 * 111.00191 * 277.23107 * 12 9 8 14 14 N 1.46497 * 110.99793 * 153.38003 * 12 9 8 15 15 C 1.36943 * 119.99525 * 161.35408 * 14 12 9 16 16 H 1.07998 * 120.00204 * 359.97438 * 15 14 12 17 17 C 1.38813 * 120.00096 * 180.02562 * 15 14 12 18 18 N 1.31626 * 119.99853 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00076 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47021 * 59.99802 * 19 17 15 21 21 H 1.48496 * 109.47056 * 179.97438 * 19 17 15 22 22 H 1.48492 * 109.47152 * 299.99771 * 19 17 15 23 23 C 1.47423 * 125.64640 * 0.02566 * 7 5 4 24 24 N 1.46504 * 109.46801 * 239.99824 * 2 1 3 25 25 C 1.45758 * 117.94039 * 120.02506 * 24 2 1 26 26 C 1.52921 * 110.48415 * 160.92488 * 25 24 2 27 27 C 1.53345 * 108.67449 * 50.75535 * 26 25 24 28 28 C 1.53256 * 108.26183 * 292.28357 * 27 26 25 29 29 C 1.33350 * 117.95070 * 300.00649 * 24 2 1 30 30 O 1.21283 * 118.24281 * 2.21942 * 29 24 2 31 31 H 1.08994 * 109.47686 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47074 * 300.00262 * 1 2 3 33 33 H 1.09007 * 109.47028 * 59.99210 * 1 2 3 34 34 H 1.09002 * 109.47228 * 304.99400 * 4 2 1 35 35 H 1.09000 * 109.47329 * 64.99842 * 4 2 1 36 36 H 1.09003 * 109.88133 * 298.39996 * 8 7 5 37 37 H 1.09004 * 109.87776 * 59.56152 * 8 7 5 38 38 H 1.08998 * 109.47219 * 173.69807 * 11 9 8 39 39 H 1.09009 * 109.47140 * 293.68870 * 11 9 8 40 40 H 1.08997 * 109.47728 * 53.69103 * 11 9 8 41 41 H 0.97000 * 120.01001 * 341.34431 * 14 12 9 42 42 H 0.96997 * 119.99683 * 180.02562 * 18 17 15 43 43 H 1.08996 * 110.36910 * 322.93133 * 23 7 5 44 44 H 1.08999 * 110.36738 * 85.14184 * 23 7 5 45 45 H 1.08997 * 109.30094 * 281.23434 * 25 24 2 46 46 H 1.08997 * 109.30182 * 40.61420 * 25 24 2 47 47 H 1.09001 * 109.60454 * 170.50740 * 26 25 24 48 48 H 1.08995 * 109.60430 * 290.99720 * 26 25 24 49 49 H 1.09002 * 109.67647 * 52.19675 * 27 26 25 50 50 H 1.08999 * 109.67789 * 172.73547 * 27 26 25 51 51 H 1.08999 * 109.60030 * 289.08971 * 28 27 26 52 52 H 1.09003 * 109.30020 * 169.29004 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 6 3.5419 -0.6151 1.3127 6 8 4.1450 -0.0213 0.4440 7 7 4.2148 -1.1799 2.3347 8 6 5.6735 -1.1578 2.5165 9 6 5.9826 -1.9016 3.8330 10 1 6.2496 -2.9397 3.6348 11 6 7.0972 -1.1964 4.6082 12 6 4.6393 -1.8182 4.6052 13 1 4.5452 -0.8639 5.1233 14 7 4.5011 -2.9371 5.5406 15 6 3.6035 -2.8604 6.5720 16 1 2.9978 -1.9749 6.6960 17 6 3.4729 -3.9204 7.4587 18 7 4.2114 -4.9994 7.3079 19 14 2.2490 -3.8154 8.8660 20 1 0.8803 -3.6344 8.3191 21 1 2.3017 -5.0678 9.6622 22 1 2.5916 -2.6611 9.7349 23 6 3.6105 -1.9278 3.4522 24 7 2.0183 -0.6907 -1.1962 25 6 2.8534 0.0602 -2.1253 26 6 3.6415 -0.8918 -3.0259 27 6 2.6684 -1.9060 -3.6391 28 6 2.1448 -2.8085 -2.5166 29 6 1.6712 -1.9669 -1.3665 30 8 0.9377 -2.4766 -0.5460 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5140 -0.8900 34 1 1.6054 -0.2618 2.1370 35 1 1.7516 -1.7716 1.2055 36 1 6.1589 -1.6619 1.6808 37 1 6.0230 -0.1275 2.5842 38 1 7.2204 -1.6722 5.5810 39 1 8.0300 -1.2672 4.0485 40 1 6.8357 -0.1474 4.7472 41 1 5.0452 -3.7324 5.4294 42 1 4.1199 -5.7402 7.9273 43 1 2.6636 -1.4740 3.7444 44 1 3.4604 -2.9708 3.1735 45 1 2.2214 0.6992 -2.7421 46 1 3.5491 0.6824 -1.5624 47 1 4.1278 -0.3254 -3.8201 48 1 4.3923 -1.4165 -2.4352 49 1 1.8380 -1.3796 -4.1098 50 1 3.1885 -2.5107 -4.3820 51 1 2.9421 -3.4697 -2.1771 52 1 1.3153 -3.4071 -2.8929 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082508696.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:26 Heat of formation + Delta-G solvation = -63.072717 kcal Electronic energy + Delta-G solvation = -31094.943036 eV Core-core repulsion = 27094.275880 eV Total energy + Delta-G solvation = -4000.667156 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.97519 -39.59187 -37.59067 -36.47899 -35.29229 -34.05173 -32.57886 -31.36048 -30.71565 -29.61982 -28.35476 -27.48310 -25.76584 -24.59571 -23.97929 -23.32573 -21.71399 -21.11827 -19.90018 -19.07160 -18.39378 -17.18079 -17.07492 -16.67734 -16.18917 -15.94557 -15.63539 -14.96444 -14.87045 -14.39244 -14.29572 -14.09075 -13.88905 -13.62645 -13.33441 -13.24712 -13.11479 -12.94870 -12.76946 -12.65328 -12.34228 -12.17570 -11.85362 -11.76759 -11.69943 -11.62793 -11.40811 -11.15878 -11.12728 -11.10631 -11.01493 -10.89902 -10.70960 -10.61937 -10.27928 -9.93812 -9.78694 -9.53016 -9.38242 -9.00936 -8.67562 -8.30387 -7.09203 -5.85424 -3.16318 2.63517 2.88897 2.98223 3.27549 3.40314 3.45398 3.45779 4.41322 4.50503 4.56024 4.58267 4.62600 4.69345 4.86474 5.01593 5.12508 5.17754 5.20626 5.21877 5.23590 5.39355 5.43695 5.49971 5.53787 5.57116 5.62062 5.64847 5.65252 5.68853 5.76599 5.78299 5.80912 5.84423 5.92753 5.98189 6.01905 6.04792 6.20821 6.23141 6.25734 6.37655 6.46741 6.54649 6.58560 6.62745 6.87439 7.52515 7.62304 7.84396 8.19304 8.31782 8.42638 9.43996 9.97481 10.32443 11.36465 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014065 B = 0.002995 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.337341 B = 9346.324640 C =10224.552284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.162 3.838 3 H 0.090 0.910 4 C -0.160 4.160 5 C 0.529 3.471 6 O -0.557 6.557 7 N -0.613 5.613 8 C 0.119 3.881 9 C -0.114 4.114 10 H 0.083 0.917 11 C -0.134 4.134 12 C 0.178 3.822 13 H 0.064 0.936 14 N -0.710 5.710 15 C -0.249 4.249 16 H 0.071 0.929 17 C -0.007 4.007 18 N -0.929 5.929 19 Si 0.908 3.092 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.285 1.285 23 C 0.073 3.927 24 N -0.584 5.584 25 C 0.115 3.885 26 C -0.134 4.134 27 C -0.123 4.123 28 C -0.135 4.135 29 C 0.514 3.486 30 O -0.552 6.552 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.387 0.613 42 H 0.257 0.743 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.055 0.945 46 H 0.095 0.905 47 H 0.080 0.920 48 H 0.073 0.927 49 H 0.068 0.932 50 H 0.073 0.927 51 H 0.097 0.903 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.933 10.353 -20.775 23.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.058 3.942 3 H 0.108 0.892 4 C -0.200 4.200 5 C 0.319 3.681 6 O -0.437 6.437 7 N -0.346 5.346 8 C -0.004 4.004 9 C -0.134 4.134 10 H 0.101 0.899 11 C -0.191 4.191 12 C 0.066 3.934 13 H 0.082 0.918 14 N -0.350 5.350 15 C -0.380 4.380 16 H 0.089 0.911 17 C -0.204 4.204 18 N -0.577 5.577 19 Si 0.739 3.261 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.212 1.212 23 C -0.053 4.053 24 N -0.316 5.316 25 C -0.008 4.008 26 C -0.171 4.171 27 C -0.160 4.160 28 C -0.175 4.175 29 C 0.302 3.698 30 O -0.432 6.432 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.136 0.864 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.221 0.779 42 H 0.067 0.933 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.073 0.927 46 H 0.113 0.887 47 H 0.098 0.902 48 H 0.092 0.908 49 H 0.087 0.913 50 H 0.091 0.909 51 H 0.115 0.885 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.139 10.446 -20.719 23.231 hybrid contribution -0.460 -0.364 0.780 0.976 sum -1.599 10.082 -19.939 22.400 Atomic orbital electron populations 1.22246 0.94311 1.04715 1.01600 1.20789 0.94161 0.95938 0.83315 0.89180 1.22178 0.92216 1.06129 0.99487 1.20306 0.89745 0.77929 0.80137 1.90557 1.70638 1.44003 1.38524 1.48552 1.07869 1.53913 1.24314 1.21918 0.80893 1.00276 0.97323 1.22477 0.97095 0.99936 0.93866 0.89872 1.21660 0.96804 1.00021 1.00633 1.21346 0.90060 0.93310 0.88704 0.91776 1.42285 1.46895 1.16235 1.29626 1.19183 1.14158 1.00917 1.03712 0.91055 1.24760 0.99783 0.96371 0.99480 1.69650 1.42461 1.06367 1.39192 0.86263 0.80991 0.76774 0.82116 1.21097 1.21650 1.21171 1.23511 0.99027 0.95897 0.86856 1.47231 1.49974 1.11151 1.23240 1.21462 0.93613 0.94346 0.91357 1.21840 0.98300 0.97849 0.99157 1.21695 0.99417 0.97588 0.97341 1.21694 1.03146 0.98356 0.94302 1.20095 0.80466 0.81845 0.87362 1.90633 1.37237 1.70772 1.44564 0.89520 0.91762 0.92798 0.88318 0.86428 0.92331 0.91814 0.91340 0.93241 0.92922 0.77852 0.93282 0.91298 0.91270 0.92658 0.88730 0.90173 0.90832 0.91303 0.90851 0.88517 0.88520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 9.08 37.16 0.34 -1.56 16 2 C 0.16 1.96 2.20 -67.93 -0.15 1.81 16 3 H 0.09 1.03 7.60 -51.93 -0.39 0.64 16 4 C -0.16 -2.23 4.01 -27.88 -0.11 -2.34 16 5 C 0.53 8.35 7.71 -10.99 -0.08 8.27 16 6 O -0.56 -9.26 13.56 5.55 0.08 -9.18 16 7 N -0.61 -9.92 3.33 -170.52 -0.57 -10.48 16 8 C 0.12 1.80 6.48 -3.06 -0.02 1.78 16 9 C -0.11 -1.81 3.16 -88.78 -0.28 -2.09 16 10 H 0.08 1.37 7.99 -51.93 -0.42 0.96 16 11 C -0.13 -1.90 9.16 37.15 0.34 -1.56 16 12 C 0.18 3.35 3.14 -65.78 -0.21 3.14 16 13 H 0.06 1.24 8.03 -51.93 -0.42 0.82 16 14 N -0.71 -16.75 5.28 -51.35 -0.27 -17.02 16 15 C -0.25 -6.57 9.98 -15.06 -0.15 -6.72 16 16 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 17 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 18 N -0.93 -27.14 13.06 55.49 0.72 -26.41 16 19 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 C 0.07 1.29 6.38 -2.53 -0.02 1.27 16 24 N -0.58 -6.93 2.24 -167.37 -0.37 -7.31 16 25 C 0.11 1.11 5.73 -4.48 -0.03 1.09 16 26 C -0.13 -1.09 6.02 -26.59 -0.16 -1.25 16 27 C -0.12 -0.90 6.05 -26.42 -0.16 -1.06 16 28 C -0.14 -1.32 6.03 -28.01 -0.17 -1.49 16 29 C 0.51 6.71 6.86 -11.87 -0.08 6.63 16 30 O -0.55 -8.95 12.46 5.55 0.07 -8.88 16 31 H 0.09 1.16 5.84 -51.93 -0.30 0.86 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.10 1.25 7.85 -51.93 -0.41 0.85 16 35 H 0.12 1.90 5.89 -51.93 -0.31 1.59 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.93 7.77 -51.93 -0.40 0.53 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 40 H 0.05 0.71 8.07 -51.93 -0.42 0.29 16 41 H 0.39 9.76 7.71 -40.82 -0.31 9.44 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.07 1.19 7.48 -51.93 -0.39 0.80 16 44 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.09 1.06 6.25 -51.93 -0.32 0.74 16 47 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 49 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 50 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 52 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 400.72 15.07 6.04 6.04 Total: -1.00 -30.84 400.72 -9.50 -40.33 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -9.13 Total: 10.53 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: -1.03 Total: 5.63 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: -0.49 Total: -61.22 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: 0.14 Total: -18.06 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.84 -9.50 -40.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082508696.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.740 kcal (2) G-P(sol) polarization free energy of solvation -30.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds