Wall clock time and date at job start Tue Mar 31 2020 20:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46673 * 2 1 4 4 C 1.52998 * 109.47276 * 239.99625 * 2 1 3 5 5 C 1.50698 * 109.47102 * 174.99758 * 4 2 1 6 6 O 1.21280 * 119.99745 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99753 * 179.97438 * 5 4 2 8 8 C 1.47290 * 125.79121 * 180.02562 * 7 5 4 9 9 C 1.54325 * 107.30599 * 178.92556 * 8 7 5 10 10 H 1.08997 * 110.72163 * 96.18354 * 9 8 7 11 11 C 1.53003 * 110.72022 * 219.45263 * 9 8 7 12 12 C 1.55154 * 102.94303 * 337.81911 * 9 8 7 13 13 H 1.09008 * 111.00345 * 277.42446 * 12 9 8 14 14 N 1.46494 * 111.03692 * 153.59078 * 12 9 8 15 15 C 1.36945 * 119.99906 * 161.33170 * 14 12 9 16 16 H 1.08002 * 120.00181 * 359.97438 * 15 14 12 17 17 C 1.38809 * 119.99839 * 179.97438 * 15 14 12 18 18 N 1.31624 * 120.00397 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00030 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46998 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47429 * 119.99957 * 19 17 15 22 22 H 1.48505 * 109.47457 * 240.00222 * 19 17 15 23 23 C 1.47425 * 125.65138 * 0.02907 * 7 5 4 24 24 N 1.46505 * 109.46949 * 119.99515 * 2 1 3 25 25 C 1.45744 * 117.94969 * 240.00070 * 24 2 1 26 26 C 1.52921 * 110.49198 * 160.92758 * 25 24 2 27 27 C 1.53349 * 108.67124 * 50.75026 * 26 25 24 28 28 C 1.53069 * 108.42615 * 292.46968 * 27 26 25 29 29 C 1.33361 * 117.93947 * 59.74046 * 24 2 1 30 30 O 1.21275 * 118.24900 * 2.22136 * 29 24 2 31 31 H 1.09000 * 109.47298 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47260 * 300.00219 * 1 2 3 33 33 H 1.08999 * 109.47104 * 59.99840 * 1 2 3 34 34 H 1.09001 * 109.46936 * 54.99784 * 4 2 1 35 35 H 1.09000 * 109.47095 * 295.00245 * 4 2 1 36 36 H 1.09004 * 109.85762 * 59.50172 * 8 7 5 37 37 H 1.08995 * 110.00297 * 298.43119 * 8 7 5 38 38 H 1.08995 * 109.46983 * 173.52221 * 11 9 8 39 39 H 1.09001 * 109.47276 * 293.52685 * 11 9 8 40 40 H 1.09004 * 109.46998 * 53.52573 * 11 9 8 41 41 H 0.96999 * 120.00536 * 341.32669 * 14 12 9 42 42 H 0.96993 * 120.00247 * 179.97438 * 18 17 15 43 43 H 1.09002 * 110.36696 * 85.25946 * 23 7 5 44 44 H 1.08995 * 110.36608 * 323.04783 * 23 7 5 45 45 H 1.09000 * 109.29995 * 281.23894 * 25 24 2 46 46 H 1.08996 * 109.30312 * 40.61323 * 25 24 2 47 47 H 1.08995 * 109.60666 * 170.50994 * 26 25 24 48 48 H 1.08997 * 109.59960 * 290.99985 * 26 25 24 49 49 H 1.09000 * 109.67133 * 52.20587 * 27 26 25 50 50 H 1.08996 * 109.67215 * 172.73775 * 27 26 25 51 51 H 1.08996 * 109.40214 * 169.02647 * 28 27 26 52 52 H 1.08991 * 109.40464 * 288.86105 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 8 4.1450 -0.0210 -0.4440 7 7 4.2149 -1.1806 -2.3341 8 6 5.6756 -1.1557 -2.5221 9 6 5.9867 -1.9515 -3.8072 10 1 6.0868 -1.2815 -4.6610 11 6 7.2503 -2.7956 -3.6286 12 6 4.7381 -2.8589 -3.9649 13 1 4.8221 -3.7506 -3.3435 14 7 4.5235 -3.2189 -5.3686 15 6 3.7355 -4.2926 -5.6873 16 1 3.2725 -4.8742 -4.9039 17 6 3.5318 -4.6334 -7.0174 18 7 4.0964 -3.9249 -7.9723 19 14 2.4575 -6.0984 -7.4523 20 1 1.9457 -6.7240 -6.2065 21 1 1.3144 -5.6444 -8.2845 22 1 3.2587 -7.0919 -8.2114 23 6 3.6107 -1.9286 -3.4516 24 7 2.0183 -0.6905 1.1963 25 6 2.8529 0.0604 2.1256 26 6 2.8767 -0.6211 3.4944 27 6 3.2230 -2.1022 3.2994 28 6 2.0607 -2.7787 2.5684 29 6 1.6668 -1.9653 1.3691 30 8 0.9973 -2.4978 0.5095 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.6054 -0.2619 -2.1369 35 1 1.7516 -1.7716 -1.2055 36 1 6.1667 -1.6230 -1.6686 37 1 6.0201 -0.1273 -2.6304 38 1 7.3870 -3.4341 -4.5013 39 1 8.1135 -2.1390 -3.5198 40 1 7.1504 -3.4151 -2.7373 41 1 4.9395 -2.6968 -6.0723 42 1 3.9543 -4.1633 -8.9017 43 1 3.2953 -1.2446 -4.2395 44 1 2.7637 -2.5175 -3.0999 45 1 3.8683 0.1165 1.7334 46 1 2.4551 1.0695 2.2326 47 1 3.6303 -0.1492 4.1248 48 1 1.8969 -0.5334 3.9636 49 1 4.1322 -2.1913 2.7047 50 1 3.3711 -2.5753 4.2701 51 1 2.3648 -3.7754 2.2490 52 1 1.2072 -2.8589 3.2416 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082508697.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:30 Heat of formation + Delta-G solvation = -63.133244 kcal Electronic energy + Delta-G solvation = -31161.348968 eV Core-core repulsion = 27160.679187 eV Total energy + Delta-G solvation = -4000.669781 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.97405 -39.56449 -37.57568 -36.49418 -35.29546 -34.03826 -32.56877 -31.36072 -30.70549 -29.64951 -28.34664 -27.46233 -25.76402 -24.59643 -23.97502 -23.33899 -21.66329 -21.13815 -19.89136 -19.14676 -18.30334 -17.18892 -17.06513 -16.70623 -16.12115 -15.91675 -15.67100 -15.00725 -14.73242 -14.45491 -14.35751 -14.12750 -13.82490 -13.62255 -13.32784 -13.22114 -13.10532 -12.93577 -12.85602 -12.66178 -12.24316 -12.05715 -12.02166 -11.81093 -11.70537 -11.64941 -11.32665 -11.18819 -11.12607 -11.10448 -11.02214 -10.89543 -10.70739 -10.60744 -10.21273 -9.90922 -9.78266 -9.54112 -9.36946 -9.01266 -8.65919 -8.28731 -7.08211 -5.85009 -3.15665 2.64008 2.90207 2.98380 3.28592 3.40241 3.47315 3.48805 4.40996 4.51197 4.54157 4.55428 4.60551 4.70809 4.88400 5.01399 5.13677 5.16230 5.20228 5.21943 5.24510 5.37436 5.40369 5.51081 5.54549 5.57269 5.60953 5.64921 5.66826 5.71196 5.76027 5.77416 5.79838 5.82107 5.93529 6.01282 6.02566 6.06012 6.20044 6.22701 6.26142 6.40433 6.46943 6.55920 6.57560 6.63573 6.88527 7.52537 7.65525 7.86326 8.19518 8.32326 8.44694 9.44872 9.98066 10.33229 11.36988 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013289 B = 0.003106 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.496921 B = 9011.490983 C = 9833.796686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.162 3.838 3 H 0.090 0.910 4 C -0.161 4.161 5 C 0.530 3.470 6 O -0.558 6.558 7 N -0.614 5.614 8 C 0.119 3.881 9 C -0.114 4.114 10 H 0.084 0.916 11 C -0.134 4.134 12 C 0.178 3.822 13 H 0.064 0.936 14 N -0.711 5.711 15 C -0.246 4.246 16 H 0.073 0.927 17 C -0.008 4.008 18 N -0.930 5.930 19 Si 0.907 3.093 20 H -0.279 1.279 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.072 3.928 24 N -0.584 5.584 25 C 0.113 3.887 26 C -0.135 4.135 27 C -0.123 4.123 28 C -0.134 4.134 29 C 0.513 3.487 30 O -0.552 6.552 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.387 0.613 42 H 0.256 0.744 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.068 0.932 47 H 0.081 0.919 48 H 0.067 0.933 49 H 0.072 0.928 50 H 0.073 0.927 51 H 0.098 0.902 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.150 9.144 21.935 23.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.058 3.942 3 H 0.108 0.892 4 C -0.201 4.201 5 C 0.320 3.680 6 O -0.438 6.438 7 N -0.347 5.347 8 C -0.004 4.004 9 C -0.133 4.133 10 H 0.102 0.898 11 C -0.191 4.191 12 C 0.066 3.934 13 H 0.082 0.918 14 N -0.351 5.351 15 C -0.377 4.377 16 H 0.091 0.909 17 C -0.205 4.205 18 N -0.577 5.577 19 Si 0.738 3.262 20 H -0.204 1.204 21 H -0.218 1.218 22 H -0.218 1.218 23 C -0.054 4.054 24 N -0.316 5.316 25 C -0.009 4.009 26 C -0.173 4.173 27 C -0.161 4.161 28 C -0.174 4.174 29 C 0.302 3.698 30 O -0.432 6.432 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.140 0.860 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.221 0.779 42 H 0.066 0.934 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.104 0.896 46 H 0.086 0.914 47 H 0.100 0.900 48 H 0.086 0.914 49 H 0.090 0.910 50 H 0.092 0.908 51 H 0.116 0.884 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.306 9.043 21.990 23.813 hybrid contribution -0.481 -0.509 -0.661 0.963 sum -1.787 8.534 21.329 23.042 Atomic orbital electron populations 1.22218 0.94395 1.04482 1.01691 1.20780 0.93998 0.95973 0.83442 0.89209 1.22203 0.92188 1.06382 0.99339 1.20298 0.89744 0.77879 0.80124 1.90555 1.70673 1.44027 1.38549 1.48604 1.07869 1.53886 1.24340 1.21963 0.80906 0.99874 0.97684 1.22476 0.96704 0.97649 0.96516 0.89794 1.21662 0.95759 0.99359 1.02355 1.21347 0.89823 0.93913 0.88356 0.91835 1.42297 1.58495 1.34466 0.99806 1.19293 1.22060 1.04730 0.91606 0.90917 1.24754 1.00686 0.99381 0.95658 1.69668 1.47755 1.41108 0.99206 0.86127 0.79845 0.82147 0.78128 1.20394 1.21762 1.21805 1.23501 0.99338 0.95017 0.87512 1.47214 1.50091 1.11244 1.23055 1.21493 0.96753 0.94454 0.88231 1.21895 1.02551 0.96089 0.96774 1.21640 0.98281 0.95267 1.00922 1.21650 1.00037 0.99953 0.95766 1.20090 0.79766 0.81666 0.88273 1.90629 1.39986 1.69479 1.43111 0.89824 0.92763 0.91640 0.88461 0.86031 0.91955 0.92191 0.91339 0.93227 0.92953 0.77874 0.93421 0.91271 0.91189 0.89585 0.91355 0.90012 0.91391 0.90968 0.90830 0.88377 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.86 9.08 37.16 0.34 -1.52 16 2 C 0.16 1.96 2.20 -67.93 -0.15 1.81 16 3 H 0.09 1.03 7.60 -51.93 -0.39 0.64 16 4 C -0.16 -2.27 4.01 -27.89 -0.11 -2.38 16 5 C 0.53 8.48 7.71 -10.99 -0.08 8.40 16 6 O -0.56 -9.43 13.55 5.56 0.08 -9.36 16 7 N -0.61 -10.04 3.34 -170.31 -0.57 -10.61 16 8 C 0.12 1.81 6.49 -2.92 -0.02 1.79 16 9 C -0.11 -1.81 3.17 -88.78 -0.28 -2.09 16 10 H 0.08 1.37 8.00 -51.93 -0.42 0.96 16 11 C -0.13 -1.93 9.16 37.16 0.34 -1.59 16 12 C 0.18 3.40 3.13 -65.79 -0.21 3.19 16 13 H 0.06 1.27 8.04 -51.92 -0.42 0.86 16 14 N -0.71 -16.82 5.28 -51.35 -0.27 -17.09 16 15 C -0.25 -6.55 9.98 -15.06 -0.15 -6.70 16 16 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 17 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 18 N -0.93 -27.14 13.06 55.49 0.72 -26.42 16 19 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 C 0.07 1.28 6.38 -2.53 -0.02 1.27 16 24 N -0.58 -6.92 2.24 -167.38 -0.37 -7.29 16 25 C 0.11 1.09 5.76 -4.49 -0.03 1.07 16 26 C -0.14 -0.97 6.02 -26.59 -0.16 -1.13 16 27 C -0.12 -0.96 6.04 -26.51 -0.16 -1.12 16 28 C -0.13 -1.29 6.03 -28.11 -0.17 -1.46 16 29 C 0.51 6.67 6.88 -11.87 -0.08 6.59 16 30 O -0.55 -8.94 12.45 5.56 0.07 -8.87 16 31 H 0.08 1.10 5.98 -51.93 -0.31 0.79 16 32 H 0.05 0.53 8.14 -51.92 -0.42 0.10 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.12 1.97 5.45 -51.93 -0.28 1.69 16 36 H 0.06 0.94 7.77 -51.93 -0.40 0.53 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.72 8.06 -51.93 -0.42 0.30 16 41 H 0.39 9.73 7.71 -40.82 -0.31 9.41 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.07 1.27 7.47 -51.93 -0.39 0.89 16 45 H 0.09 1.01 6.32 -51.93 -0.33 0.69 16 46 H 0.07 0.57 8.03 -51.93 -0.42 0.15 16 47 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 49 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 50 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 52 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 400.69 15.07 6.04 6.04 Total: -1.00 -31.10 400.69 -9.49 -40.60 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -9.13 Total: 10.28 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -1.03 Total: 5.80 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: -0.49 Total: -61.40 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: 0.14 Total: -18.23 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.10 -9.49 -40.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082508697.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.538 kcal (2) G-P(sol) polarization free energy of solvation -31.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds