Wall clock time and date at job start Tue Mar 31 2020 20:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46673 * 2 1 4 4 C 1.52998 * 109.47276 * 239.99625 * 2 1 3 5 5 C 1.50698 * 109.47102 * 174.99758 * 4 2 1 6 6 O 1.21280 * 119.99745 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99753 * 179.97438 * 5 4 2 8 8 C 1.47290 * 125.79121 * 180.02562 * 7 5 4 9 9 C 1.54325 * 107.30599 * 178.92556 * 8 7 5 10 10 H 1.08997 * 110.72163 * 96.18354 * 9 8 7 11 11 C 1.53003 * 110.72022 * 219.45263 * 9 8 7 12 12 C 1.55154 * 102.94303 * 337.81911 * 9 8 7 13 13 H 1.09008 * 111.00345 * 277.42446 * 12 9 8 14 14 N 1.46494 * 111.03692 * 153.59078 * 12 9 8 15 15 C 1.36945 * 119.99906 * 161.33170 * 14 12 9 16 16 H 1.08002 * 120.00181 * 359.97438 * 15 14 12 17 17 C 1.38809 * 119.99839 * 179.97438 * 15 14 12 18 18 N 1.31624 * 120.00397 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00030 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46998 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47429 * 119.99957 * 19 17 15 22 22 H 1.48505 * 109.47457 * 240.00222 * 19 17 15 23 23 C 1.47425 * 125.65138 * 0.02907 * 7 5 4 24 24 N 1.46505 * 109.46949 * 119.99515 * 2 1 3 25 25 C 1.45744 * 117.94969 * 240.00070 * 24 2 1 26 26 C 1.52921 * 110.49198 * 160.92758 * 25 24 2 27 27 C 1.53349 * 108.67124 * 50.75026 * 26 25 24 28 28 C 1.53069 * 108.42615 * 292.46968 * 27 26 25 29 29 C 1.33361 * 117.93947 * 59.74046 * 24 2 1 30 30 O 1.21275 * 118.24900 * 2.22136 * 29 24 2 31 31 H 1.09000 * 109.47298 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47260 * 300.00219 * 1 2 3 33 33 H 1.08999 * 109.47104 * 59.99840 * 1 2 3 34 34 H 1.09001 * 109.46936 * 54.99784 * 4 2 1 35 35 H 1.09000 * 109.47095 * 295.00245 * 4 2 1 36 36 H 1.09004 * 109.85762 * 59.50172 * 8 7 5 37 37 H 1.08995 * 110.00297 * 298.43119 * 8 7 5 38 38 H 1.08995 * 109.46983 * 173.52221 * 11 9 8 39 39 H 1.09001 * 109.47276 * 293.52685 * 11 9 8 40 40 H 1.09004 * 109.46998 * 53.52573 * 11 9 8 41 41 H 0.96999 * 120.00536 * 341.32669 * 14 12 9 42 42 H 0.96993 * 120.00247 * 179.97438 * 18 17 15 43 43 H 1.09002 * 110.36696 * 85.25946 * 23 7 5 44 44 H 1.08995 * 110.36608 * 323.04783 * 23 7 5 45 45 H 1.09000 * 109.29995 * 281.23894 * 25 24 2 46 46 H 1.08996 * 109.30312 * 40.61323 * 25 24 2 47 47 H 1.08995 * 109.60666 * 170.50994 * 26 25 24 48 48 H 1.08997 * 109.59960 * 290.99985 * 26 25 24 49 49 H 1.09000 * 109.67133 * 52.20587 * 27 26 25 50 50 H 1.08996 * 109.67215 * 172.73775 * 27 26 25 51 51 H 1.08996 * 109.40214 * 169.02647 * 28 27 26 52 52 H 1.08991 * 109.40464 * 288.86105 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 8 4.1450 -0.0210 -0.4440 7 7 4.2149 -1.1806 -2.3341 8 6 5.6756 -1.1557 -2.5221 9 6 5.9867 -1.9515 -3.8072 10 1 6.0868 -1.2815 -4.6610 11 6 7.2503 -2.7956 -3.6286 12 6 4.7381 -2.8589 -3.9649 13 1 4.8221 -3.7506 -3.3435 14 7 4.5235 -3.2189 -5.3686 15 6 3.7355 -4.2926 -5.6873 16 1 3.2725 -4.8742 -4.9039 17 6 3.5318 -4.6334 -7.0174 18 7 4.0964 -3.9249 -7.9723 19 14 2.4575 -6.0984 -7.4523 20 1 1.9457 -6.7240 -6.2065 21 1 1.3144 -5.6444 -8.2845 22 1 3.2587 -7.0919 -8.2114 23 6 3.6107 -1.9286 -3.4516 24 7 2.0183 -0.6905 1.1963 25 6 2.8529 0.0604 2.1256 26 6 2.8767 -0.6211 3.4944 27 6 3.2230 -2.1022 3.2994 28 6 2.0607 -2.7787 2.5684 29 6 1.6668 -1.9653 1.3691 30 8 0.9973 -2.4978 0.5095 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.6054 -0.2619 -2.1369 35 1 1.7516 -1.7716 -1.2055 36 1 6.1667 -1.6230 -1.6686 37 1 6.0201 -0.1273 -2.6304 38 1 7.3870 -3.4341 -4.5013 39 1 8.1135 -2.1390 -3.5198 40 1 7.1504 -3.4151 -2.7373 41 1 4.9395 -2.6968 -6.0723 42 1 3.9543 -4.1633 -8.9017 43 1 3.2953 -1.2446 -4.2395 44 1 2.7637 -2.5175 -3.0999 45 1 3.8683 0.1165 1.7334 46 1 2.4551 1.0695 2.2326 47 1 3.6303 -0.1492 4.1248 48 1 1.8969 -0.5334 3.9636 49 1 4.1322 -2.1913 2.7047 50 1 3.3711 -2.5753 4.2701 51 1 2.3648 -3.7754 2.2490 52 1 1.2072 -2.8589 3.2416 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082508697.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:30 Heat of formation + Delta-G solvation = -81.287893 kcal Electronic energy + Delta-G solvation = -31162.136213 eV Core-core repulsion = 27160.679187 eV Total energy + Delta-G solvation = -4001.457026 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.97628 -40.85711 -38.95476 -37.38966 -36.24631 -35.83570 -34.00363 -32.60914 -32.19941 -30.44176 -29.44388 -29.11598 -26.95373 -25.87882 -25.34680 -24.25417 -23.09293 -22.08881 -21.34404 -20.39531 -19.21707 -19.12743 -18.10954 -17.95919 -17.36290 -17.05540 -16.75795 -16.34034 -16.14552 -15.60822 -15.36261 -15.25745 -15.12407 -14.75425 -14.61053 -14.53614 -14.35789 -14.14931 -14.01790 -14.00086 -13.30724 -13.14807 -13.10552 -13.00337 -12.92984 -12.87772 -12.80064 -12.64123 -12.29976 -12.22833 -12.13334 -12.02440 -11.83794 -11.79490 -11.75737 -11.68882 -11.41163 -11.02449 -10.79124 -10.36220 -9.68737 -9.59814 -9.06169 -7.96703 -5.26397 1.47553 1.48994 1.58141 1.60251 1.67583 1.97142 2.10519 2.55081 3.33350 3.36218 3.58705 3.74724 3.77818 3.84844 3.91688 3.91970 3.93983 3.97314 4.14516 4.20413 4.32241 4.32945 4.44243 4.47450 4.53217 4.54905 4.59580 4.65603 4.71036 4.76661 4.78126 4.84679 4.87463 4.91873 4.96742 4.99334 5.07079 5.08653 5.11024 5.11292 5.21356 5.29508 5.32053 5.40517 5.42782 5.53351 5.64691 6.24703 6.50490 6.61938 7.13119 7.23998 7.32662 8.02735 8.28180 9.26054 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013289 B = 0.003106 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.496921 B = 9011.490983 C = 9833.796686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.159 3.841 3 H 0.099 0.901 4 C -0.157 4.157 5 C 0.527 3.473 6 O -0.563 6.563 7 N -0.617 5.617 8 C 0.123 3.877 9 C -0.103 4.103 10 H 0.081 0.919 11 C -0.128 4.128 12 C 0.172 3.828 13 H 0.055 0.945 14 N -0.719 5.719 15 C -0.242 4.242 16 H 0.073 0.927 17 C -0.066 4.066 18 N -0.964 5.964 19 Si 0.967 3.033 20 H -0.269 1.269 21 H -0.293 1.293 22 H -0.293 1.293 23 C 0.088 3.912 24 N -0.584 5.584 25 C 0.110 3.890 26 C -0.128 4.128 27 C -0.118 4.118 28 C -0.132 4.132 29 C 0.501 3.499 30 O -0.593 6.593 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.076 0.924 40 H 0.058 0.942 41 H 0.378 0.622 42 H 0.252 0.748 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.084 0.916 47 H 0.102 0.898 48 H 0.080 0.920 49 H 0.054 0.946 50 H 0.099 0.901 51 H 0.091 0.909 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.056 9.975 24.381 26.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.055 3.945 3 H 0.118 0.882 4 C -0.197 4.197 5 C 0.318 3.682 6 O -0.444 6.444 7 N -0.350 5.350 8 C 0.000 4.000 9 C -0.122 4.122 10 H 0.100 0.900 11 C -0.186 4.186 12 C 0.061 3.939 13 H 0.073 0.927 14 N -0.358 5.358 15 C -0.374 4.374 16 H 0.091 0.909 17 C -0.259 4.259 18 N -0.614 5.614 19 Si 0.796 3.204 20 H -0.194 1.194 21 H -0.221 1.221 22 H -0.220 1.220 23 C -0.038 4.038 24 N -0.314 5.314 25 C -0.012 4.012 26 C -0.165 4.165 27 C -0.156 4.156 28 C -0.172 4.172 29 C 0.291 3.709 30 O -0.475 6.475 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.125 0.875 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.211 0.789 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.103 0.897 47 H 0.121 0.879 48 H 0.099 0.901 49 H 0.073 0.927 50 H 0.117 0.883 51 H 0.109 0.891 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.194 9.898 24.510 26.460 hybrid contribution -0.472 -0.716 -1.345 1.595 sum -1.666 9.182 23.165 24.974 Atomic orbital electron populations 1.22121 0.93424 1.03250 1.03049 1.20849 0.94758 0.96025 0.82853 0.88250 1.22191 0.90950 1.05473 1.01066 1.20620 0.90437 0.77466 0.79687 1.90557 1.71019 1.44265 1.38537 1.48629 1.08353 1.53918 1.24123 1.21988 0.80287 1.00411 0.97301 1.22390 0.95882 0.97048 0.96899 0.90048 1.21618 0.95898 0.99374 1.01678 1.21464 0.92072 0.94422 0.85917 0.92708 1.42358 1.58174 1.33863 1.01412 1.19582 1.21284 1.04919 0.91607 0.90866 1.25459 1.02551 1.02064 0.95790 1.69798 1.49591 1.42814 0.99169 0.85180 0.78063 0.79279 0.77872 1.19381 1.22050 1.22013 1.23095 0.98410 0.94533 0.87753 1.47349 1.49756 1.11168 1.23140 1.21629 0.95148 0.95449 0.89017 1.21895 1.03977 0.95258 0.95419 1.21628 0.96510 0.95942 1.01524 1.21688 1.01540 0.99108 0.94862 1.20755 0.79210 0.82058 0.88830 1.90615 1.41857 1.70345 1.44721 0.92235 0.91231 0.90449 0.87547 0.88146 0.91259 0.91047 0.93303 0.90522 0.92333 0.78907 0.93918 0.92037 0.92021 0.91785 0.89739 0.87923 0.90116 0.92739 0.88278 0.89068 0.86793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 9.08 71.98 0.65 -2.71 16 2 C 0.16 3.72 2.20 44.99 0.10 3.82 16 3 H 0.10 2.13 7.60 -2.39 -0.02 2.11 16 4 C -0.16 -4.40 4.01 29.85 0.12 -4.28 16 5 C 0.53 16.57 7.71 87.66 0.68 17.25 16 6 O -0.56 -18.43 13.55 -3.03 -0.04 -18.47 16 7 N -0.62 -19.83 3.34 -811.12 -2.71 -22.53 16 8 C 0.12 3.57 6.49 86.68 0.56 4.13 16 9 C -0.10 -3.19 3.17 -9.60 -0.03 -3.22 16 10 H 0.08 2.61 8.00 -2.39 -0.02 2.59 16 11 C -0.13 -3.53 9.16 71.98 0.66 -2.87 16 12 C 0.17 6.61 3.13 46.38 0.15 6.75 16 13 H 0.05 2.21 8.04 -2.38 -0.02 2.19 16 14 N -0.72 -34.56 5.28 -316.38 -1.67 -36.23 16 15 C -0.24 -13.03 9.98 84.03 0.84 -12.20 16 16 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 17 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 18 N -0.96 -57.24 13.06 21.65 0.28 -56.95 16 19 Si 0.97 45.59 29.55 68.60 2.03 47.61 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 21 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 22 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 23 C 0.09 3.16 6.38 86.86 0.55 3.71 16 24 N -0.58 -13.23 2.24 -802.66 -1.79 -15.03 16 25 C 0.11 1.91 5.76 86.50 0.50 2.40 16 26 C -0.13 -1.46 6.02 30.69 0.18 -1.27 16 27 C -0.12 -1.59 6.04 30.73 0.19 -1.40 16 28 C -0.13 -2.38 6.03 29.70 0.18 -2.20 16 29 C 0.50 12.84 6.88 87.71 0.60 13.45 16 30 O -0.59 -19.62 12.45 -3.01 -0.04 -19.66 16 31 H 0.06 1.58 5.98 -2.39 -0.01 1.56 16 32 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.11 2.72 8.14 -2.39 -0.02 2.71 16 35 H 0.10 3.36 5.45 -2.39 -0.01 3.35 16 36 H 0.07 1.95 7.77 -2.38 -0.02 1.93 16 37 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.06 1.53 8.06 -2.39 -0.02 1.51 16 41 H 0.38 19.42 7.71 -92.71 -0.72 18.70 16 42 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 43 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.06 2.30 7.47 -2.39 -0.02 2.28 16 45 H 0.06 1.42 6.32 -2.39 -0.02 1.41 16 46 H 0.08 1.19 8.03 -2.39 -0.02 1.17 16 47 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.08 0.77 8.12 -2.39 -0.02 0.75 16 49 H 0.05 0.93 8.13 -2.39 -0.02 0.91 16 50 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 51 H 0.09 1.75 8.14 -2.39 -0.02 1.74 16 52 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -67.69 400.69 2.64 -65.05 By element: Atomic # 1 Polarization: 37.86 SS G_CDS: 0.19 Total: 38.05 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: 6.39 Total: 18.15 kcal Atomic # 7 Polarization: -124.85 SS G_CDS: -5.89 Total: -130.74 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -0.08 Total: -38.13 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -67.69 2.64 -65.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082508697.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.237 kcal (2) G-P(sol) polarization free energy of solvation -67.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds