Wall clock time and date at job start Tue Mar 31 2020 20:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.88618 * 2 1 4 4 C 1.54913 * 111.00465 * 236.11562 * 2 1 3 5 5 N 1.47421 * 104.83026 * 204.91401 * 4 2 1 6 6 C 1.34778 * 125.64731 * 204.09056 * 5 4 2 7 7 O 1.21285 * 119.99688 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00099 * 180.02562 * 6 5 4 9 9 H 1.08996 * 110.85671 * 56.21255 * 8 6 5 10 10 C 1.54619 * 110.96925 * 292.37756 * 8 6 5 11 11 C 1.51281 * 104.19775 * 266.68028 * 10 8 6 12 12 O 1.21283 * 124.94320 * 163.71594 * 11 10 8 13 13 N 1.34413 * 110.11648 * 343.74848 * 11 10 8 14 14 C 1.46497 * 124.35463 * 179.59595 * 13 11 10 15 15 C 1.53001 * 109.47083 * 240.00039 * 14 13 11 16 16 C 1.53002 * 109.47027 * 359.97438 * 14 13 11 17 17 C 1.52996 * 109.47787 * 119.99667 * 14 13 11 18 18 C 1.46768 * 111.30156 * 359.58884 * 13 11 10 19 19 C 1.47021 * 108.70724 * 24.35952 * 5 4 2 20 20 C 1.54341 * 107.26260 * 358.58308 * 19 5 4 21 21 H 1.08994 * 110.51492 * 96.45096 * 20 19 5 22 22 N 1.46497 * 110.84764 * 219.67477 * 20 19 5 23 23 C 1.36945 * 119.99866 * 268.69115 * 22 20 19 24 24 H 1.07994 * 120.00163 * 0.02562 * 23 22 20 25 25 C 1.38812 * 119.99699 * 179.97438 * 23 22 20 26 26 N 1.31621 * 120.00282 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 119.99773 * 180.02562 * 25 23 22 28 28 H 1.48503 * 109.47236 * 0.02562 * 27 25 23 29 29 H 1.48497 * 109.47135 * 119.99880 * 27 25 23 30 30 H 1.48496 * 109.47026 * 240.00392 * 27 25 23 31 31 H 1.09001 * 109.47414 * 182.43237 * 1 2 3 32 32 H 1.09002 * 109.47340 * 302.42782 * 1 2 3 33 33 H 1.09001 * 109.47200 * 62.42851 * 1 2 3 34 34 H 1.08999 * 110.36557 * 86.07921 * 4 2 1 35 35 H 1.08997 * 110.36741 * 323.75842 * 4 2 1 36 36 H 1.09007 * 110.48907 * 25.35666 * 10 8 6 37 37 H 1.09001 * 110.48711 * 147.86861 * 10 8 6 38 38 H 1.08998 * 109.47182 * 59.99826 * 15 14 13 39 39 H 1.09009 * 109.47178 * 179.97438 * 15 14 13 40 40 H 1.08997 * 109.47208 * 299.99200 * 15 14 13 41 41 H 1.09008 * 109.47162 * 59.99924 * 16 14 13 42 42 H 1.08997 * 109.47743 * 180.02562 * 16 14 13 43 43 H 1.09005 * 109.47253 * 300.00654 * 16 14 13 44 44 H 1.08997 * 109.47072 * 59.99650 * 17 14 13 45 45 H 1.08994 * 109.47691 * 180.02562 * 17 14 13 46 46 H 1.09004 * 109.47303 * 300.00329 * 17 14 13 47 47 H 1.09000 * 110.25007 * 258.01877 * 18 13 11 48 48 H 1.09004 * 110.24485 * 136.01583 * 18 13 11 49 49 H 1.09001 * 109.88491 * 118.12306 * 19 5 4 50 50 H 1.08998 * 109.88443 * 239.29169 * 19 5 4 51 51 H 0.96996 * 120.00101 * 88.68751 * 22 20 19 52 52 H 0.97001 * 119.99841 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0852 -0.8063 -1.2006 5 7 3.4271 -1.2428 -0.7737 6 6 4.4476 -1.5610 -1.5945 7 8 4.3008 -1.4990 -2.7968 8 6 5.7711 -1.9940 -1.0184 9 1 5.6446 -2.8508 -0.3566 10 6 6.4641 -0.8235 -0.2833 11 6 7.3637 -0.2074 -1.3320 12 8 7.8678 0.8930 -1.2552 13 7 7.5224 -1.0567 -2.3617 14 6 8.3268 -0.7712 -3.5523 15 6 7.4363 -0.8286 -4.7952 16 6 8.9413 0.6246 -3.4300 17 6 9.4423 -1.8110 -3.6757 18 6 6.7865 -2.3070 -2.1399 19 6 3.4658 -1.2796 0.6955 20 6 2.0861 -0.8083 1.2020 21 1 1.4468 -1.6636 1.4204 22 7 2.2286 0.0488 2.3815 23 6 2.2000 -0.5015 3.6352 24 1 2.0727 -1.5672 3.7544 25 6 2.3355 0.3106 4.7528 26 7 2.4911 1.6095 4.6075 27 14 2.2972 -0.4400 6.4629 28 1 2.1131 -1.9096 6.3545 29 1 3.5770 -0.1520 7.1587 30 1 1.1714 0.1446 7.2349 31 1 -0.3634 -1.0267 0.0436 32 1 -0.3634 0.5511 0.8674 33 1 -0.3633 0.4757 -0.9110 34 1 2.1560 -0.1714 -2.0837 35 1 1.4518 -1.6699 -1.4030 36 1 5.7263 -0.0983 0.0601 37 1 7.0520 -1.1948 0.5561 38 1 6.6416 -0.0878 -4.7074 39 1 8.0348 -0.6158 -5.6811 40 1 6.9982 -1.8229 -4.8826 41 1 9.5757 0.6660 -2.5444 42 1 9.5395 0.8373 -4.3160 43 1 8.1464 1.3653 -3.3423 44 1 9.0043 -2.8052 -3.7630 45 1 10.0411 -1.5983 -4.5613 46 1 10.0768 -1.7701 -2.7902 47 1 7.4689 -3.0951 -1.8217 48 1 6.2642 -2.6037 -3.0495 49 1 3.6601 -2.2967 1.0359 50 1 4.2424 -0.6088 1.0629 51 1 2.3433 1.0060 2.2745 52 1 2.5863 2.1769 5.3885 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082541720.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:49 Heat of formation + Delta-G solvation = -53.954646 kcal Electronic energy + Delta-G solvation = -31141.874236 eV Core-core repulsion = 27141.602469 eV Total energy + Delta-G solvation = -4000.271767 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.18926 -39.61229 -37.70972 -36.73555 -35.56320 -34.14381 -32.62246 -30.86118 -30.46060 -28.03801 -27.62706 -27.51865 -27.22015 -26.38742 -24.13597 -23.04459 -21.69745 -21.21135 -20.02165 -19.07863 -18.67955 -17.33387 -17.20828 -16.62164 -16.07876 -15.97835 -15.25389 -15.01459 -14.73902 -14.20839 -14.12891 -13.95231 -13.87067 -13.61302 -13.43439 -13.29609 -13.10424 -12.95027 -12.69650 -12.47106 -12.34165 -12.22934 -12.17591 -11.99960 -11.80927 -11.74855 -11.62992 -11.40344 -11.26238 -11.19323 -11.12469 -11.03423 -10.78089 -10.64520 -10.28228 -10.04012 -9.84110 -9.68865 -9.40408 -9.05357 -8.73127 -8.42140 -7.14699 -5.89339 -3.20834 2.58937 2.66202 2.86122 3.08581 3.35988 3.41797 3.44395 4.19664 4.24655 4.41152 4.50905 4.67478 4.73369 4.77025 4.88138 4.94786 5.08542 5.15236 5.21980 5.27429 5.37380 5.38887 5.48643 5.51975 5.56273 5.57822 5.58359 5.63765 5.67352 5.69105 5.73487 5.78291 5.78906 5.88783 5.90893 5.94874 6.13959 6.17422 6.20088 6.24197 6.30699 6.43401 6.48453 6.56888 6.60886 6.80271 7.11328 7.58618 7.69405 8.20196 8.22667 8.27845 9.39780 9.93067 10.27686 11.32316 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014133 B = 0.003094 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.638166 B = 9048.508405 C =10138.188860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 H 0.083 0.917 4 C 0.114 3.886 5 N -0.609 5.609 6 C 0.534 3.466 7 O -0.546 6.546 8 C -0.120 4.120 9 H 0.122 0.878 10 C -0.149 4.149 11 C 0.520 3.480 12 O -0.526 6.526 13 N -0.605 5.605 14 C 0.174 3.826 15 C -0.154 4.154 16 C -0.140 4.140 17 C -0.155 4.155 18 C 0.118 3.882 19 C 0.066 3.934 20 C 0.178 3.822 21 H 0.069 0.931 22 N -0.710 5.710 23 C -0.250 4.250 24 H 0.073 0.927 25 C -0.007 4.007 26 N -0.927 5.927 27 Si 0.907 3.093 28 H -0.279 1.279 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.059 0.941 47 H 0.077 0.923 48 H 0.095 0.905 49 H 0.061 0.939 50 H 0.077 0.923 51 H 0.387 0.613 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.995 -9.335 -16.111 20.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.136 4.136 3 H 0.101 0.899 4 C -0.009 4.009 5 N -0.341 5.341 6 C 0.321 3.679 7 O -0.424 6.424 8 C -0.142 4.142 9 H 0.140 0.860 10 C -0.189 4.189 11 C 0.308 3.692 12 O -0.403 6.403 13 N -0.340 5.340 14 C 0.091 3.909 15 C -0.212 4.212 16 C -0.198 4.198 17 C -0.214 4.214 18 C -0.005 4.005 19 C -0.060 4.060 20 C 0.065 3.935 21 H 0.087 0.913 22 N -0.350 5.350 23 C -0.381 4.381 24 H 0.091 0.909 25 C -0.204 4.204 26 N -0.574 5.574 27 Si 0.737 3.263 28 H -0.205 1.205 29 H -0.218 1.218 30 H -0.218 1.218 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.130 0.870 37 H 0.134 0.866 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.078 0.922 47 H 0.095 0.905 48 H 0.113 0.887 49 H 0.080 0.920 50 H 0.095 0.905 51 H 0.222 0.778 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.270 -8.805 -16.628 20.552 hybrid contribution 0.015 -0.220 1.131 1.153 sum 8.285 -9.025 -15.496 19.754 Atomic orbital electron populations 1.21591 0.93820 1.01799 1.01778 1.22667 0.96406 0.99844 0.94638 0.89871 1.22267 0.82612 0.98131 0.97849 1.48482 1.11987 1.65467 1.08193 1.19831 0.84470 0.77454 0.86104 1.90670 1.83008 1.54277 1.14486 1.22235 0.92882 1.00585 0.98492 0.85997 1.22448 0.99893 0.98272 0.98281 1.20766 0.80850 0.84512 0.83051 1.90729 1.51138 1.19524 1.78890 1.48325 1.49368 1.17236 1.19092 1.20441 0.90149 0.96207 0.84091 1.22144 0.99883 1.02898 0.96310 1.22095 1.01526 0.94473 1.01682 1.22178 0.98048 0.98736 1.02401 1.21923 0.92684 0.86574 0.99365 1.23506 1.03749 1.01379 0.77342 1.21236 0.91495 0.93824 0.86914 0.91330 1.42372 1.86247 1.06259 1.00111 1.19268 1.43101 0.92585 0.83146 0.90918 1.24772 1.02172 0.95424 0.97990 1.69668 1.55720 1.02873 1.29111 0.86139 0.77278 0.78181 0.84655 1.20468 1.21760 1.21793 0.92809 0.91384 0.93236 0.91028 0.91582 0.87037 0.86601 0.91903 0.91697 0.92081 0.91289 0.92575 0.91265 0.92239 0.91378 0.92205 0.90511 0.88654 0.92036 0.90482 0.77827 0.93323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.29 37.16 0.35 -1.45 16 2 C -0.12 -1.74 3.27 -88.47 -0.29 -2.03 16 3 H 0.08 1.36 8.01 -51.93 -0.42 0.95 16 4 C 0.11 1.61 6.37 -2.53 -0.02 1.59 16 5 N -0.61 -8.86 3.30 -170.51 -0.56 -9.43 16 6 C 0.53 7.70 7.14 -10.99 -0.08 7.62 16 7 O -0.55 -9.23 15.79 5.55 0.09 -9.15 16 8 C -0.12 -1.34 2.91 -90.14 -0.26 -1.60 16 9 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 10 C -0.15 -1.86 5.87 -26.75 -0.16 -2.02 16 11 C 0.52 7.60 7.84 -10.86 -0.09 7.51 16 12 O -0.53 -9.38 13.99 5.56 0.08 -9.30 16 13 N -0.61 -7.30 2.76 -157.57 -0.43 -7.73 16 14 C 0.17 1.87 1.20 -131.82 -0.16 1.71 16 15 C -0.15 -1.57 8.49 37.16 0.32 -1.26 16 16 C -0.14 -1.67 7.00 37.16 0.26 -1.41 16 17 C -0.16 -1.27 8.54 37.16 0.32 -0.96 16 18 C 0.12 1.19 5.93 -3.12 -0.02 1.17 16 19 C 0.07 1.02 5.93 -3.06 -0.02 1.00 16 20 C 0.18 3.09 3.07 -66.09 -0.20 2.88 16 21 H 0.07 1.20 7.96 -51.93 -0.41 0.78 16 22 N -0.71 -15.93 5.15 -51.65 -0.27 -16.20 16 23 C -0.25 -6.31 9.96 -15.06 -0.15 -6.46 16 24 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 25 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 26 N -0.93 -26.49 13.06 55.49 0.72 -25.77 16 27 Si 0.91 21.13 29.55 -169.99 -5.02 16.10 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 30 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 31 H 0.05 0.67 8.11 -51.93 -0.42 0.25 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 1.04 8.04 -51.93 -0.42 0.62 16 35 H 0.07 0.86 8.04 -51.93 -0.42 0.44 16 36 H 0.11 1.62 6.02 -51.93 -0.31 1.31 16 37 H 0.12 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 40 H 0.06 0.60 7.21 -51.93 -0.37 0.23 16 41 H 0.07 0.91 7.06 -51.92 -0.37 0.55 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.99 7.08 -51.93 -0.37 0.62 16 44 H 0.06 0.43 7.90 -51.93 -0.41 0.02 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.10 1.04 6.00 -51.93 -0.31 0.73 16 49 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.08 1.29 6.05 -51.93 -0.31 0.98 16 51 H 0.39 9.48 7.76 -40.82 -0.32 9.16 16 52 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 404.17 15.07 6.09 6.09 Total: -1.00 -31.16 404.17 -8.66 -39.81 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -9.05 Total: 9.52 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -0.29 Total: 6.04 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -0.54 Total: -59.12 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: 0.17 Total: -18.45 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.16 -8.66 -39.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082541720.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.143 kcal (2) G-P(sol) polarization free energy of solvation -31.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds