Wall clock time and date at job start Tue Mar 31 2020 20:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21274 * 120.00113 * 2 1 4 4 N 1.34780 * 119.99552 * 180.02562 * 2 1 3 5 5 C 1.46920 * 120.63674 * 5.47277 * 4 2 1 6 6 C 1.53192 * 108.77830 * 233.63544 * 5 4 2 7 7 C 1.53041 * 109.31098 * 305.36287 * 6 5 4 8 8 C 1.53047 * 109.53789 * 61.36502 * 7 6 5 9 9 C 1.46935 * 120.62301 * 185.49936 * 4 2 1 10 10 H 1.08999 * 109.69961 * 246.22200 * 9 4 2 11 11 C 1.52994 * 109.58797 * 6.58037 * 9 4 2 12 12 C 1.50701 * 109.47101 * 282.76080 * 11 9 4 13 13 O 1.21281 * 119.99941 * 359.97438 * 12 11 9 14 14 N 1.34772 * 120.00020 * 180.02562 * 12 11 9 15 15 C 1.47424 * 125.64889 * 179.97438 * 14 12 11 16 16 C 1.54916 * 104.83076 * 204.15853 * 15 14 12 17 17 H 1.09003 * 111.00210 * 81.06542 * 16 15 14 18 18 C 1.53004 * 111.00478 * 204.91300 * 16 15 14 19 19 C 1.55155 * 101.58205 * 322.98862 * 16 15 14 20 20 H 1.08999 * 110.71809 * 277.14090 * 19 16 15 21 21 N 1.46499 * 110.71897 * 153.86505 * 19 16 15 22 22 C 1.36938 * 120.00117 * 160.02193 * 21 19 16 23 23 H 1.08001 * 119.99731 * 0.02562 * 22 21 19 24 24 C 1.38813 * 120.00170 * 179.97438 * 22 21 19 25 25 N 1.31619 * 119.99854 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 119.99847 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47048 * 60.00385 * 26 24 22 28 28 H 1.48503 * 109.47161 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.47338 * 300.00046 * 26 24 22 30 30 C 1.47022 * 125.64987 * 0.02562 * 14 12 11 31 31 H 1.09004 * 109.47287 * 185.53495 * 1 2 3 32 32 H 1.09006 * 109.46980 * 305.52902 * 1 2 3 33 33 H 1.08991 * 109.47527 * 65.53211 * 1 2 3 34 34 H 1.09000 * 109.58485 * 113.84474 * 5 4 2 35 35 H 1.09007 * 109.70125 * 353.49415 * 5 4 2 36 36 H 1.08996 * 109.49701 * 185.41526 * 6 5 4 37 37 H 1.08999 * 109.49497 * 65.31400 * 6 5 4 38 38 H 1.09005 * 109.45984 * 301.34552 * 7 6 5 39 39 H 1.08992 * 109.46078 * 181.38313 * 7 6 5 40 40 H 1.08996 * 109.49675 * 178.68468 * 8 7 6 41 41 H 1.08995 * 109.52124 * 58.60091 * 8 7 6 42 42 H 1.09002 * 109.47153 * 162.76335 * 11 9 4 43 43 H 1.09002 * 109.47320 * 42.76149 * 11 9 4 44 44 H 1.08997 * 110.36641 * 322.99530 * 15 14 12 45 45 H 1.08996 * 110.36817 * 85.32322 * 15 14 12 46 46 H 1.08992 * 109.47301 * 172.19344 * 18 16 15 47 47 H 1.09002 * 109.47094 * 292.20276 * 18 16 15 48 48 H 1.09007 * 109.46537 * 52.19493 * 18 16 15 49 49 H 0.97002 * 120.00267 * 340.02866 * 21 19 16 50 50 H 0.96995 * 119.99901 * 180.02562 * 25 24 22 51 51 H 1.08999 * 109.88072 * 59.48858 * 30 14 12 52 52 H 1.09005 * 110.01198 * 298.40125 * 30 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.4653 -2.4447 -0.1217 6 6 1.8764 -3.3525 1.0419 7 6 3.4008 -3.4858 1.0657 8 6 4.0317 -2.1082 1.2815 9 6 3.6450 -1.1863 0.1206 10 1 4.0854 -1.5589 -0.8042 11 6 4.1552 0.2291 0.3979 12 6 4.1437 1.0267 -0.8807 13 8 3.7652 0.5133 -1.9122 14 7 4.5550 2.3101 -0.8781 15 6 4.5961 3.2016 -2.0515 16 6 5.6656 4.2668 -1.7030 17 1 6.6702 3.8873 -1.8898 18 6 5.4194 5.5643 -2.4756 19 6 5.4208 4.4687 -0.1843 20 1 4.6018 5.1678 -0.0154 21 7 6.6423 4.9286 0.4809 22 6 6.5662 5.5509 1.6984 23 1 5.6057 5.7023 2.1683 24 6 7.7237 5.9861 2.3290 25 7 8.8944 5.8011 1.7565 26 14 7.6198 6.8357 3.9893 27 1 6.9967 5.9180 4.9767 28 1 8.9854 7.1995 4.4456 29 1 6.7948 8.0642 3.8660 30 6 5.0381 3.0527 0.2952 31 1 -0.3634 -1.0229 0.0991 32 1 -0.3633 0.5972 0.8364 33 1 -0.3634 0.4256 -0.9353 34 1 1.7259 -2.9213 -1.0667 35 1 0.3901 -2.2686 -0.0855 36 1 1.4271 -4.3370 0.9115 37 1 1.5345 -2.9174 1.9810 38 1 3.7441 -3.8978 0.1167 39 1 3.6945 -4.1509 1.8776 40 1 5.1164 -2.2071 1.3216 41 1 3.6700 -1.6847 2.2184 42 1 5.1727 0.1792 0.7858 43 1 3.5096 0.7107 1.1324 44 1 4.8910 2.6447 -2.9409 45 1 3.6256 3.6740 -2.2032 46 1 6.0963 6.3375 -2.1123 47 1 5.5980 5.3945 -3.5374 48 1 4.3882 5.8852 -2.3274 49 1 7.5051 4.7923 0.0590 50 1 9.7032 6.1049 2.1973 51 1 5.9119 2.5546 0.7152 52 1 4.2510 3.1161 1.0466 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082801798.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:16 Heat of formation + Delta-G solvation = -40.098457 kcal Electronic energy + Delta-G solvation = -31259.658789 eV Core-core repulsion = 27259.987871 eV Total energy + Delta-G solvation = -3999.670918 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.94902 -39.15606 -37.48609 -37.16494 -33.89897 -33.52267 -32.87842 -32.21686 -30.61414 -29.55946 -28.35333 -27.28383 -25.86940 -24.79433 -23.84982 -22.58991 -21.42937 -21.09293 -19.78304 -19.21921 -18.54689 -17.20261 -17.03388 -16.56726 -16.24079 -15.65489 -15.49337 -14.92313 -14.76521 -14.64477 -14.27672 -13.93954 -13.89691 -13.46571 -13.43382 -13.11962 -13.03965 -12.82747 -12.70216 -12.56410 -12.41940 -12.19710 -12.13397 -11.82555 -11.53924 -11.38072 -11.24845 -11.15534 -11.04224 -11.01321 -10.90821 -10.84037 -10.59003 -10.50237 -10.20370 -9.84826 -9.68548 -9.44603 -9.04210 -8.89373 -8.63921 -7.95102 -7.01501 -5.79156 -3.09066 2.54591 2.86947 3.43207 3.44662 3.48083 3.48803 3.63077 4.32256 4.40273 4.53693 4.57658 4.66025 4.74268 4.89017 5.00357 5.03659 5.05921 5.25167 5.26564 5.30607 5.32446 5.37435 5.39518 5.53203 5.57203 5.65403 5.66011 5.69153 5.73260 5.76202 5.78856 5.82715 5.94340 5.97747 5.98914 6.06813 6.16313 6.17401 6.36277 6.39453 6.52505 6.59508 6.64166 6.71913 6.91208 7.03347 7.34646 7.69067 8.16298 8.25080 8.38866 8.84875 9.50437 10.05916 10.41356 11.43007 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013467 B = 0.003072 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.670501 B = 9113.295877 C =10068.160137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.515 3.485 3 O -0.527 6.527 4 N -0.602 5.602 5 C 0.103 3.897 6 C -0.136 4.136 7 C -0.119 4.119 8 C -0.133 4.133 9 C 0.163 3.837 10 H 0.082 0.918 11 C -0.132 4.132 12 C 0.571 3.429 13 O -0.577 6.577 14 N -0.611 5.611 15 C 0.120 3.880 16 C -0.114 4.114 17 H 0.081 0.919 18 C -0.133 4.133 19 C 0.177 3.823 20 H 0.063 0.937 21 N -0.713 5.713 22 C -0.244 4.244 23 H 0.071 0.929 24 C -0.010 4.010 25 N -0.931 5.931 26 Si 0.907 3.093 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.285 1.285 30 C 0.081 3.919 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.113 0.887 44 H 0.066 0.934 45 H 0.059 0.941 46 H 0.066 0.934 47 H 0.048 0.952 48 H 0.052 0.948 49 H 0.386 0.614 50 H 0.256 0.744 51 H 0.067 0.933 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.841 -18.614 -3.669 24.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.305 3.695 3 O -0.405 6.405 4 N -0.336 5.336 5 C -0.020 4.020 6 C -0.174 4.174 7 C -0.157 4.157 8 C -0.171 4.171 9 C 0.059 3.941 10 H 0.100 0.900 11 C -0.172 4.172 12 C 0.362 3.638 13 O -0.459 6.459 14 N -0.344 5.344 15 C -0.003 4.003 16 C -0.134 4.134 17 H 0.099 0.901 18 C -0.190 4.190 19 C 0.065 3.935 20 H 0.081 0.919 21 N -0.353 5.353 22 C -0.375 4.375 23 H 0.089 0.911 24 C -0.206 4.206 25 N -0.579 5.579 26 Si 0.738 3.262 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.212 1.212 30 C -0.045 4.045 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.109 0.891 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.131 0.869 44 H 0.084 0.916 45 H 0.077 0.923 46 H 0.085 0.915 47 H 0.067 0.933 48 H 0.071 0.929 49 H 0.221 0.779 50 H 0.066 0.934 51 H 0.085 0.915 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.761 -18.286 -4.018 24.473 hybrid contribution 0.236 0.318 0.987 1.063 sum -15.526 -17.969 -3.031 23.940 Atomic orbital electron populations 1.22041 0.92452 1.04069 1.05195 1.20655 0.90327 0.83151 0.75399 1.90635 1.68645 1.31821 1.49369 1.47991 1.06919 1.05931 1.72758 1.21868 0.97333 0.84030 0.98775 1.21938 0.96774 0.99722 0.98965 1.21506 0.94969 0.96914 1.02297 1.22022 1.01297 0.95200 0.98589 1.21016 0.79480 0.95020 0.98540 0.90008 1.22039 1.02381 0.94221 0.98561 1.19459 0.74394 0.80417 0.89511 1.90572 1.50163 1.70411 1.34716 1.48251 1.64691 1.10703 1.10804 1.22105 0.98296 0.90806 0.89141 1.22611 0.98760 0.95046 0.96968 0.90050 1.21604 1.01757 0.96932 0.98737 1.21232 0.91291 0.91582 0.89353 0.91875 1.42349 1.02823 1.68834 1.21285 1.19216 0.92998 1.30078 0.95202 0.91094 1.24743 0.95296 1.01662 0.98919 1.69652 0.97033 1.52063 1.39166 0.86275 0.76479 0.79504 0.83954 1.21233 1.21716 1.21212 1.23123 0.98294 0.95449 0.87673 0.90233 0.88934 0.88915 0.91229 0.89127 0.90719 0.91392 0.91618 0.91504 0.90371 0.91277 0.90323 0.86899 0.91583 0.92319 0.91466 0.93315 0.92937 0.77944 0.93395 0.91495 0.92617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 10.08 36.01 0.36 -1.16 16 2 C 0.52 6.71 7.15 -10.98 -0.08 6.63 16 3 O -0.53 -9.05 10.64 -14.88 -0.16 -9.20 16 4 N -0.60 -6.75 2.94 -165.22 -0.49 -7.24 16 5 C 0.10 0.75 6.35 -3.71 -0.02 0.72 16 6 C -0.14 -0.81 6.08 -26.61 -0.16 -0.98 16 7 C -0.12 -0.84 5.88 -26.69 -0.16 -0.99 16 8 C -0.13 -1.22 5.31 -26.61 -0.14 -1.36 16 9 C 0.16 2.00 2.48 -67.60 -0.17 1.83 16 10 H 0.08 1.13 7.48 -51.93 -0.39 0.74 16 11 C -0.13 -2.00 3.93 -27.89 -0.11 -2.11 16 12 C 0.57 10.60 5.00 -10.99 -0.05 10.54 16 13 O -0.58 -11.94 15.20 -14.88 -0.23 -12.16 16 14 N -0.61 -11.45 3.33 -170.52 -0.57 -12.02 16 15 C 0.12 2.10 6.38 -2.53 -0.02 2.08 16 16 C -0.11 -2.00 3.25 -88.47 -0.29 -2.29 16 17 H 0.08 1.49 8.00 -51.93 -0.42 1.08 16 18 C -0.13 -2.07 9.31 37.16 0.35 -1.72 16 19 C 0.18 3.60 3.06 -66.10 -0.20 3.40 16 20 H 0.06 1.31 8.02 -51.93 -0.42 0.90 16 21 N -0.71 -17.51 5.18 -51.65 -0.27 -17.78 16 22 C -0.24 -6.62 9.98 -15.06 -0.15 -6.77 16 23 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 24 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 25 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 26 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 30 C 0.08 1.57 6.24 -3.07 -0.02 1.55 16 31 H 0.08 0.45 5.17 -51.93 -0.27 0.18 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.47 5.07 -51.92 -0.26 0.21 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 1.12 8.04 -51.93 -0.42 0.70 16 43 H 0.11 1.82 6.04 -51.93 -0.31 1.50 16 44 H 0.07 1.15 8.04 -51.93 -0.42 0.74 16 45 H 0.06 1.01 7.98 -51.93 -0.41 0.60 16 46 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 47 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.05 0.77 8.07 -51.93 -0.42 0.35 16 49 H 0.39 10.11 7.71 -40.82 -0.31 9.80 16 50 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 51 H 0.07 1.37 8.03 -51.93 -0.42 0.96 16 52 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 398.68 15.07 6.01 6.01 Total: -1.00 -33.80 398.68 -10.04 -43.84 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -9.08 Total: 9.40 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: -0.96 Total: 9.00 kcal Atomic # 7 Polarization: -63.36 SS G_CDS: -0.60 Total: -63.96 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.38 Total: -21.37 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.80 -10.04 -43.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082801798.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.741 kcal (2) G-P(sol) polarization free energy of solvation -33.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds